Rmu_sc0003410.1_g000001

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003410.1
OG0000169
Physical Location & Seq
Forward (+)
168 .. 764
597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003410.1_g000001.1.cds

Sequence Viewer

Length: 489 bp
atggcttccatcgacgttgtgactgctagctttactgcctctttggcacttgctgacgggggaaacgcccctgatttggggaagcttggaggaggttcggctcgtaggattcaagcacgagcagataaccgcttcctgttttcatttggttctgtccgggatcgaaacaaggttcttaagggtggggtgtggtgttatgatagggctccggtctgtctggaagaatatgatggtgttctctccattgtggacatccctatgaagcacatcagaatttgggttagggtttctggtgtccctcctctctatgaggaacaggaaaacctcatacttattgggaatcttctcgggggctatttggattacgacaagaaggagttccgtaaaggtagcatccgcatcttgttctctcatgatgtttctaaacccgttctattggagcgtcgagttttcttggctccaggtgttgagccgatattgcaattctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

162

Amino Acids

17.95

Weight (kDa)

8.58

Isoelectric Point (pI)

41.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 130, 397
AclWI GGATC 1 cut(s) 168
AcsI RAATTY 1 cut(s) 273
AfiI CCNNNNNNNGG 2 cut(s) 76, 77
AflII CTTAAG 1 cut(s) 176
AgsI TTSAA 1 cut(s) 113
AjnI CCWGG 1 cut(s) 460
AluBI AGCT 2 cut(s) 30, 85
AluI AGCT 2 cut(s) 30, 85
AlwI GGATC 1 cut(s) 168
Ama87I CYCGRG 1 cut(s) 347
ApoI RAATTY 1 cut(s) 273
Asp700I GAANNNNTTC 1 cut(s) 377
AsuC2I CCSGG 1 cut(s) 158
AsuNHI GCTAGC 1 cut(s) 26
AvaI CYCGRG 1 cut(s) 347
BanII GRGCYC 1 cut(s) 208
BauI CACGAG 1 cut(s) 117
BccI CCATC 2 cut(s) 17, 224
BciT130I CCWGG 1 cut(s) 462
BcnI CCSGG 1 cut(s) 158
BfaI CTAG 2 cut(s) 27, 487
BfrI CTTAAG 1 cut(s) 176
BglI GCCNNNNNGGC 1 cut(s) 44
Bme1390I CCNGG 2 cut(s) 158, 462
BmeT110I CYCGRG 1 cut(s) 347
BmiI GGNNCC 2 cut(s) 207, 459
BmrFI CCNGG 2 cut(s) 158, 462
BmsI GCATC 2 cut(s) 402, 408
BmtI GCTAGC 1 cut(s) 30
BpmI CTGGAG 1 cut(s) 444
BpuMI CCSGG 1 cut(s) 158
BsaWI WCCGGW 1 cut(s) 208
Bsc4I CCNNNNNNNGG 2 cut(s) 76, 77
BseBI CCWGG 1 cut(s) 462
BseGI GGATG 2 cut(s) 252, 393
BseLI CCNNNNNNNGG 2 cut(s) 76, 77
BseRI GAGGAG 2 cut(s) 105, 291
BsiHKCI CYCGRG 1 cut(s) 347
BsiSI CCGG 2 cut(s) 157, 209
BslFI GGGAC 1 cut(s) 281
BslI CCNNNNNNNGG 2 cut(s) 76, 77
BsmFI GGGAC 1 cut(s) 281
BsoBI CYCGRG 1 cut(s) 347
Bsp1286I GDGCHC 1 cut(s) 208
Bsp143I GATC 1 cut(s) 160
BspACI CCGC 2 cut(s) 130, 397
BspHI TCATGA 1 cut(s) 412
BspLI GGNNCC 2 cut(s) 207, 459
BspOI GCTAGC 1 cut(s) 30
BspPI GGATC 1 cut(s) 168
BspTI CTTAAG 1 cut(s) 176
BssMI GATC 1 cut(s) 160
BssSI CACGAG 1 cut(s) 117
Bst2BI CACGAG 1 cut(s) 117
Bst2UI CCWGG 1 cut(s) 462
BstAFI CTTAAG 1 cut(s) 176
BstC8I GCNNGC 1 cut(s) 28
BstF5I GGATG 2 cut(s) 252, 393
BstKTI GATC 1 cut(s) 163
BstMBI GATC 1 cut(s) 160
BstMWI GCNNNNNNNGC 2 cut(s) 44, 478
BstNI CCWGG 1 cut(s) 462
BstSCI CCNGG 2 cut(s) 156, 460
BtsCI GGATG 2 cut(s) 252, 393
Cac8I GCNNGC 1 cut(s) 28
CciI TCATGA 1 cut(s) 412
CseI GACGC 1 cut(s) 431
CviAII CATG 1 cut(s) 413
CviJI RGCY 8 cut(s) 5, 30, 85, 101, 206, 354, 458, 472
CviKI_1 RGCY 8 cut(s) 5, 30, 85, 101, 206, 354, 458, 472
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
Eco24I GRGCYC 1 cut(s) 208
Eco88I CYCGRG 1 cut(s) 347
EcoRII CCWGG 1 cut(s) 460
EcoT38I GRGCYC 1 cut(s) 208
FaeI CATG 1 cut(s) 416
FaiI YATR 6 cut(s) 198, 228, 260, 309, 329, 414
FaqI GGGAC 1 cut(s) 281
FatI CATG 1 cut(s) 412
FokI GGATG 2 cut(s) 239, 380
FriOI GRGCYC 1 cut(s) 208
FspBI CTAG 2 cut(s) 27, 487
GsuI CTGGAG 1 cut(s) 444
HapII CCGG 2 cut(s) 157, 209
HgaI GACGC 1 cut(s) 431
Hin1II CATG 1 cut(s) 416
HindIII AAGCTT 1 cut(s) 83
HinfI GANTC 2 cut(s) 109, 340
HpaII CCGG 2 cut(s) 157, 209
Hpy166II GTNNAC 1 cut(s) 250
Hpy188I TCNGA 1 cut(s) 272
Hpy188III TCNNGA 2 cut(s) 218, 413
Hpy8I GTNNAC 1 cut(s) 250
Hpy99I CGWCG 2 cut(s) 17, 447
HpyAV CCTTC 1 cut(s) 367
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 1 cut(s) 481
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 478
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 1 cut(s) 416
Kzo9I GATC 1 cut(s) 160
LmnI GCTCC 3 cut(s) 211, 439, 463
LpnPI CCDG 9 cut(s) 84, 149, 170, 203, 222, 276, 302, 447, 474
LweI GCATC 2 cut(s) 402, 408
MaeI CTAG 2 cut(s) 27, 487
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 1 cut(s) 19
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MboII GAAGA 2 cut(s) 233, 335
MhlI GDGCHC 1 cut(s) 208
MluCI AATT 2 cut(s) 273, 482
MnlI CCTC 7 cut(s) 49, 83, 86, 304, 309, 312, 335
MroXI GAANNNNTTC 1 cut(s) 377
MseI TTAA 1 cut(s) 177
MslI CAYNNNNRTG 1 cut(s) 257
MspCI CTTAAG 1 cut(s) 176
MspI CCGG 2 cut(s) 157, 209
MspR9I CCNGG 2 cut(s) 158, 462
MvaI CCWGG 1 cut(s) 462
MwoI GCNNNNNNNGC 2 cut(s) 44, 478
NciI CCSGG 1 cut(s) 158
NdeII GATC 1 cut(s) 160
NheI GCTAGC 1 cut(s) 26
NlaIII CATG 1 cut(s) 416
NlaIV GGNNCC 2 cut(s) 207, 459
NmuCI GTSAC 1 cut(s) 19
PagI TCATGA 1 cut(s) 412
PdmI GAANNNNTTC 1 cut(s) 377
PfeI GAWTC 2 cut(s) 109, 340
PfoI TCCNGGA 1 cut(s) 156
Psp6I CCWGG 1 cut(s) 460
PspGI CCWGG 1 cut(s) 460
PspN4I GGNNCC 2 cut(s) 207, 459
RseI CAYNNNNRTG 1 cut(s) 257
SaqAI TTAA 1 cut(s) 177
Sau3AI GATC 1 cut(s) 160
ScrFI CCNGG 2 cut(s) 158, 462
SduI GDGCHC 1 cut(s) 208
SetI ASST 8 cut(s) 18, 32, 87, 97, 174, 327, 391, 466
SfaNI GCATC 2 cut(s) 402, 408
SmiMI CAYNNNNRTG 1 cut(s) 257
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 2 cut(s) 273, 482
SsiI CCGC 2 cut(s) 130, 397
SspMI CTAG 2 cut(s) 27, 487
StyD4I CCNGG 2 cut(s) 156, 460
TaiI ACGT 1 cut(s) 18
TaqI TCGA 3 cut(s) 12, 163, 445
TasI AATT 2 cut(s) 273, 482
TfiI GAWTC 2 cut(s) 109, 340
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TseFI GTSAC 1 cut(s) 19
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 2 cut(s) 132, 275
TspGWI ACGGA 1 cut(s) 371
Vha464I CTTAAG 1 cut(s) 176
XapI RAATTY 1 cut(s) 273
XmnI GAANNNNTTC 1 cut(s) 377
XspI CTAG 2 cut(s) 27, 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.