Rroxscaffold_3G00263600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000169
Physical Location & Seq
Forward (+)
57499020 .. 57499936
917 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00263600.1

Sequence Viewer

Length: 381 bp
ATGAGTCGTCTTCCAAAACTCAATCCACTTGCGCATGTGCACTTGAGCAAGCCGAGAGAGATTTTCTCTCTCACCCTAGCTCTCTACGGCGCCCTCGCCTCCTCTTCTCCTAGCTTTCTTCTCTACGTCTCTCACCATCAACCCTCACTCACCCACATAGCCTCCATTGATGCCATCACCGCTAGCTGCTGCCGCTCCCTTGCACTTGCAGAGGGAGGTAGTGCTCCCGATCCGGGGAGAATTGGTGGCGGCCTTGTTCGTCGGTCTTCCAAATCTTTTCTAATTAGGAAGCCTCGATCTACCGACCGGTCAACCCTACGGCCTTCAAGGCTCATCTCCTTTGTACTTGGATGGATGTCACTCGATGATGTTGAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

13.65

Weight (kDa)

10.02

Isoelectric Point (pI)

68.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 33
AccB1I GGYRCC 1 cut(s) 89
AccBSI CCGCTC 1 cut(s) 195
AciI CCGC 3 cut(s) 180, 193, 249
AclWI GGATC 1 cut(s) 224
AcyI GRCGYC 1 cut(s) 90
AfaI GTAC 1 cut(s) 345
AfiI CCNNNNNNNGG 2 cut(s) 233, 234
AgeI ACCGGT 1 cut(s) 306
AgsI TTSAA 2 cut(s) 327, 374
AluBI AGCT 3 cut(s) 80, 114, 186
AluI AGCT 3 cut(s) 80, 114, 186
Alw21I GWGCWC 2 cut(s) 42, 226
Alw26I GTCTC 1 cut(s) 133
Alw44I GTGCAC 1 cut(s) 38
AlwI GGATC 1 cut(s) 224
AoxI GGCC 2 cut(s) 250, 320
ApaLI GTGCAC 1 cut(s) 38
ApeKI GCWGC 2 cut(s) 186, 189
AsiGI ACCGGT 1 cut(s) 306
AspLEI GCGC 2 cut(s) 34, 92
AsuC2I CCSGG 1 cut(s) 234
AsuHPI GGTGA 4 cut(s) 64, 125, 142, 169
AsuNHI GCTAGC 1 cut(s) 182
BaeGI GKGCMC 1 cut(s) 42
BanI GGYRCC 1 cut(s) 89
BbsI GAAGAC 2 cut(s) 2, 258
Bbv12I GWGCWC 2 cut(s) 42, 226
BbvI GCAGC 2 cut(s) 173, 176
BccI CCATC 3 cut(s) 144, 182, 345
BceAI ACGGC 2 cut(s) 103, 335
BcnI CCSGG 1 cut(s) 234
BcoDI GTCTC 1 cut(s) 133
BfaI CTAG 3 cut(s) 77, 111, 183
BfoI RGCGCY 1 cut(s) 93
BglI GCCNNNNNGGC 1 cut(s) 328
BisI GCNGC 4 cut(s) 187, 190, 193, 250
BlsI GCNGC 4 cut(s) 188, 191, 194, 251
Bme1390I CCNGG 1 cut(s) 234
BmiI GGNNCC 1 cut(s) 91
BmrFI CCNGG 1 cut(s) 234
BmsI GCATC 1 cut(s) 160
BmtI GCTAGC 1 cut(s) 186
BpiI GAAGAC 2 cut(s) 2, 258
BplI GAGNNNNNCTC 2 cut(s) 50, 82
BpuEI CTTGAG 1 cut(s) 64
BpuMI CCSGG 1 cut(s) 234
BsaHI GRCGYC 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 233
BsaWI WCCGGW 1 cut(s) 306
BsaXI ACNNNNNCTCC 4 cut(s) 146, 176, 229, 259
Bsc4I CCNNNNNNNGG 2 cut(s) 233, 234
Bse118I RCCGGY 1 cut(s) 306
BseDI CCNNGG 1 cut(s) 233
BseGI GGATG 2 cut(s) 356, 360
BseLI CCNNNNNNNGG 2 cut(s) 233, 234
BseRI GAGGAG 1 cut(s) 91
BseSI GKGCMC 1 cut(s) 42
BseXI GCAGC 2 cut(s) 173, 176
Bsh1285I CGRYCG 1 cut(s) 307
BshFI GGCC 2 cut(s) 252, 322
BshNI GGYRCC 1 cut(s) 89
BshTI ACCGGT 1 cut(s) 306
BsiEI CGRYCG 1 cut(s) 307
BsiHKAI GWGCWC 2 cut(s) 42, 226
BsiSI CCGG 2 cut(s) 233, 307
BslI CCNNNNNNNGG 2 cut(s) 233, 234
BsmAI GTCTC 1 cut(s) 133
BsmBI CGTCTC 1 cut(s) 133
BsnI GGCC 2 cut(s) 252, 322
Bsp1286I GDGCHC 2 cut(s) 42, 226
Bsp143I GATC 2 cut(s) 229, 296
BspACI CCGC 3 cut(s) 180, 193, 249
BspANI GGCC 2 cut(s) 252, 322
BspLI GGNNCC 1 cut(s) 91
BspOI GCTAGC 1 cut(s) 186
BspPI GGATC 1 cut(s) 224
BspT107I GGYRCC 1 cut(s) 89
BsrBI CCGCTC 1 cut(s) 195
BsrFI RCCGGY 1 cut(s) 306
BssAI RCCGGY 1 cut(s) 306
BssECI CCNNGG 1 cut(s) 233
BssMI GATC 2 cut(s) 229, 296
BssNI GRCGYC 1 cut(s) 90
Bst6I CTCTTC 1 cut(s) 109
BstACI GRCGYC 1 cut(s) 90
BstC8I GCNNGC 2 cut(s) 50, 184
BstF5I GGATG 2 cut(s) 356, 360
BstH2I RGCGCY 1 cut(s) 93
BstHHI GCGC 2 cut(s) 34, 92
BstKTI GATC 2 cut(s) 232, 299
BstMAI GTCTC 1 cut(s) 133
BstMBI GATC 2 cut(s) 229, 296
BstMCI CGRYCG 1 cut(s) 307
BstMWI GCNNNNNNNGC 3 cut(s) 179, 192, 328
BstNSI RCATGY 1 cut(s) 38
BstSCI CCNGG 1 cut(s) 232
BstSLI GKGCMC 1 cut(s) 42
BstV1I GCAGC 2 cut(s) 173, 176
BstV2I GAAGAC 2 cut(s) 2, 258
BsuRI GGCC 2 cut(s) 252, 322
BtsCI GGATG 2 cut(s) 356, 360
Cac8I GCNNGC 2 cut(s) 50, 184
CfoI GCGC 2 cut(s) 34, 92
Cfr10I RCCGGY 1 cut(s) 306
Csp6I GTAC 1 cut(s) 344
CspAI ACCGGT 1 cut(s) 306
CviAII CATG 1 cut(s) 35
CviJI RGCY 9 cut(s) 52, 80, 114, 161, 186, 252, 292, 322, 331
CviKI_1 RGCY 9 cut(s) 52, 80, 114, 161, 186, 252, 292, 322, 331
CviQI GTAC 1 cut(s) 344
DinI GGCGCC 1 cut(s) 91
DpnI GATC 2 cut(s) 231, 298
DpnII GATC 2 cut(s) 229, 296
Eam1104I CTCTTC 1 cut(s) 109
EarI CTCTTC 1 cut(s) 109
EgeI GGCGCC 1 cut(s) 91
EheI GGCGCC 1 cut(s) 91
Esp3I CGTCTC 1 cut(s) 133
FaeI CATG 1 cut(s) 38
FaiI YATR 2 cut(s) 36, 158
FatI CATG 1 cut(s) 34
Fnu4HI GCNGC 4 cut(s) 187, 190, 193, 250
FokI GGATG 2 cut(s) 363, 367
Fsp4HI GCNGC 4 cut(s) 187, 190, 193, 250
FspBI CTAG 3 cut(s) 77, 111, 183
FspI TGCGCA 1 cut(s) 33
GlaI GCGC 2 cut(s) 33, 91
GluI GCNGC 4 cut(s) 187, 190, 193, 250
HaeII RGCGCY 1 cut(s) 93
HaeIII GGCC 2 cut(s) 252, 322
HapII CCGG 2 cut(s) 233, 307
HhaI GCGC 2 cut(s) 34, 92
Hin1I GRCGYC 1 cut(s) 90
Hin1II CATG 1 cut(s) 38
Hin6I GCGC 2 cut(s) 32, 90
HinP1I GCGC 2 cut(s) 32, 90
HincII GTYRAC 1 cut(s) 312
HindII GTYRAC 1 cut(s) 312
HinfI GANTC 1 cut(s) 4
HpaII CCGG 2 cut(s) 233, 307
HphI GGTGA 4 cut(s) 64, 125, 142, 169
Hpy166II GTNNAC 2 cut(s) 40, 312
Hpy188III TCNNGA 1 cut(s) 227
Hpy8I GTNNAC 2 cut(s) 40, 312
Hpy99I CGWCG 1 cut(s) 264
HpyAV CCTTC 1 cut(s) 333
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 3 cut(s) 40, 203, 209
HpyF10VI GCNNNNNNNGC 3 cut(s) 179, 192, 328
HpySE526I ACGT 1 cut(s) 126
Hsp92I GRCGYC 1 cut(s) 90
Hsp92II CATG 1 cut(s) 38
HspAI GCGC 2 cut(s) 32, 90
KasI GGCGCC 1 cut(s) 89
Kzo9I GATC 2 cut(s) 229, 296
LmnI GCTCC 2 cut(s) 200, 229
LpnPI CCDG 2 cut(s) 246, 320
Lsp1109I GCAGC 2 cut(s) 173, 176
LweI GCATC 1 cut(s) 160
MaeI CTAG 3 cut(s) 77, 111, 183
MaeII ACGT 1 cut(s) 126
MaeIII GTNAC 1 cut(s) 357
MalI GATC 2 cut(s) 231, 298
MbiI CCGCTC 1 cut(s) 195
MboI GATC 2 cut(s) 229, 296
MboII GAAGA 3 cut(s) 96, 110, 258
MhlI GDGCHC 2 cut(s) 42, 226
MluCI AATT 2 cut(s) 240, 282
Mly113I GGCGCC 1 cut(s) 90
MlyI GAGTC 1 cut(s) 13
MnlI CCTC 8 cut(s) 104, 109, 112, 154, 172, 205, 209, 303
MspI CCGG 2 cut(s) 233, 307
MspR9I CCNGG 1 cut(s) 234
MwoI GCNNNNNNNGC 3 cut(s) 179, 192, 328
NarI GGCGCC 1 cut(s) 90
NciI CCSGG 1 cut(s) 234
NdeII GATC 2 cut(s) 229, 296
NheI GCTAGC 1 cut(s) 182
NlaIII CATG 1 cut(s) 38
NlaIV GGNNCC 1 cut(s) 91
NmeAIII GCCGAG 1 cut(s) 78
NmuCI GTSAC 1 cut(s) 357
NsbI TGCGCA 1 cut(s) 33
NspI RCATGY 1 cut(s) 38
PinAI ACCGGT 1 cut(s) 306
PkrI GCNGC 4 cut(s) 188, 191, 194, 251
PleI GAGTC 1 cut(s) 12
PluTI GGCGCC 1 cut(s) 93
PpsI GAGTC 1 cut(s) 12
PspN4I GGNNCC 1 cut(s) 91
RsaI GTAC 1 cut(s) 345
RsaNI GTAC 1 cut(s) 344
SatI GCNGC 4 cut(s) 187, 190, 193, 250
Sau3AI GATC 2 cut(s) 229, 296
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 1 cut(s) 234
SduI GDGCHC 2 cut(s) 42, 226
SetI ASST 5 cut(s) 82, 116, 129, 188, 220
SfaNI GCATC 1 cut(s) 160
SfoI GGCGCC 1 cut(s) 91
SmlI CTYRAG 1 cut(s) 43
SmoI CTYRAG 1 cut(s) 43
Sse9I AATT 2 cut(s) 240, 282
SsiI CCGC 3 cut(s) 180, 193, 249
SspDI GGCGCC 1 cut(s) 89
SspMI CTAG 3 cut(s) 77, 111, 183
StyD4I CCNGG 1 cut(s) 232
TaiI ACGT 1 cut(s) 129
TaqI TCGA 2 cut(s) 295, 363
TaqII GACCGA 1 cut(s) 252
TasI AATT 2 cut(s) 240, 282
TatI WGTACW 1 cut(s) 343
TauI GCSGC 2 cut(s) 195, 252
TseFI GTSAC 1 cut(s) 357
TseI GCWGC 2 cut(s) 186, 189
Tsp45I GTSAC 1 cut(s) 357
VneI GTGCAC 1 cut(s) 38
XceI RCATGY 1 cut(s) 38
XspI CTAG 3 cut(s) 77, 111, 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.