RNA pseudourine synthase 3
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| 60KD_IMP | PF02096 | 157 - 349 | 2.8e-29 | 60Kd inner membrane protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1245 |
| AccI | GTMKAC | 1 cut(s) | 10 |
| AclWI | GGATC | 6 cut(s) | 166, 240, 253, 611, 826, 872 |
| AcsI | RAATTY | 1 cut(s) | 1083 |
| AcyI | GRCGYC | 1 cut(s) | 1048 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 367, 419 |
| AgsI | TTSAA | 9 cut(s) | 120, 466, 589, 697, 713, 779, 1133, 1160, 1224 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 17 |
| AjiI | CACGTC | 2 cut(s) | 14, 73 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 974, 1006 |
| AluBI | AGCT | 7 cut(s) | 186, 485, 556, 732, 791, 947, 975 |
| AluI | AGCT | 7 cut(s) | 186, 485, 556, 732, 791, 947, 975 |
| Alw21I | GWGCWC | 1 cut(s) | 793 |
| Alw26I | GTCTC | 4 cut(s) | 25, 40, 1178, 1231 |
| AlwI | GGATC | 6 cut(s) | 166, 240, 253, 611, 826, 872 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 620 |
| AoxI | GGCC | 3 cut(s) | 238, 421, 569 |
| ApeKI | GCWGC | 2 cut(s) | 392, 395 |
| ApoI | RAATTY | 1 cut(s) | 1083 |
| AspS9I | GGNCC | 3 cut(s) | 238, 365, 716 |
| AsuHPI | GGTGA | 4 cut(s) | 102, 293, 997, 1069 |
| AvaII | GGWCC | 2 cut(s) | 365, 716 |
| AxyI | CCTNAGG | 1 cut(s) | 621 |
| BamHI | GGATCC | 1 cut(s) | 245 |
| BanII | GRGCYC | 1 cut(s) | 793 |
| BbsI | GAAGAC | 1 cut(s) | 1212 |
| Bbv12I | GWGCWC | 1 cut(s) | 793 |
| BbvI | GCAGC | 2 cut(s) | 379, 407 |
| BccI | CCATC | 4 cut(s) | 63, 278, 292, 646 |
| BceAI | ACGGC | 1 cut(s) | 45 |
| BciVI | GTATCC | 1 cut(s) | 88 |
| BclI | TGATCA | 1 cut(s) | 532 |
| BcoDI | GTCTC | 4 cut(s) | 25, 40, 1178, 1231 |
| BfaI | CTAG | 3 cut(s) | 936, 944, 1250 |
| BfmI | CTRYAG | 1 cut(s) | 393 |
| BfuI | GTATCC | 1 cut(s) | 88 |
| BisI | GCNGC | 2 cut(s) | 393, 396 |
| BlsI | GCNGC | 2 cut(s) | 394, 397 |
| Bme18I | GGWCC | 2 cut(s) | 365, 716 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 17 |
| BmgBI | CACGTC | 2 cut(s) | 14, 73 |
| BmgT120I | GGNCC | 3 cut(s) | 238, 365, 716 |
| BmiI | GGNNCC | 1 cut(s) | 247 |
| BmsI | GCATC | 3 cut(s) | 485, 588, 1115 |
| BpiI | GAAGAC | 1 cut(s) | 1212 |
| BpmI | CTGGAG | 1 cut(s) | 801 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1089 |
| BpuEI | CTTGAG | 1 cut(s) | 1214 |
| Bsa29I | ATCGAT | 1 cut(s) | 438 |
| BsaHI | GRCGYC | 1 cut(s) | 1048 |
| BsaJI | CCNNGG | 4 cut(s) | 27, 241, 361, 981 |
| BsaWI | WCCGGW | 1 cut(s) | 458 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 367, 419 |
| Bse118I | RCCGGY | 1 cut(s) | 367 |
| Bse1I | ACTGG | 1 cut(s) | 962 |
| Bse21I | CCTNAGG | 1 cut(s) | 621 |
| Bse3DI | GCAATG | 2 cut(s) | 858, 951 |
| BseCI | ATCGAT | 1 cut(s) | 438 |
| BseDI | CCNNGG | 4 cut(s) | 27, 241, 361, 981 |
| BseGI | GGATG | 3 cut(s) | 55, 307, 654 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 367, 419 |
| BseMI | GCAATG | 2 cut(s) | 858, 951 |
| BseMII | CTCAG | 4 cut(s) | 553, 612, 750, 1080 |
| BseNI | ACTGG | 1 cut(s) | 962 |
| BseXI | GCAGC | 2 cut(s) | 379, 407 |
| BshFI | GGCC | 3 cut(s) | 240, 423, 571 |
| BshVI | ATCGAT | 1 cut(s) | 438 |
| BsiHKAI | GWGCWC | 1 cut(s) | 793 |
| BsiSI | CCGG | 2 cut(s) | 368, 459 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 367, 419 |
| BsmAI | GTCTC | 4 cut(s) | 25, 40, 1178, 1231 |
| BsmBI | CGTCTC | 1 cut(s) | 40 |
| BsnI | GGCC | 3 cut(s) | 240, 423, 571 |
| Bsp1286I | GDGCHC | 1 cut(s) | 793 |
| Bsp143I | GATC | 8 cut(s) | 158, 245, 435, 532, 616, 805, 831, 864 |
| BspANI | GGCC | 3 cut(s) | 240, 423, 571 |
| BspCNI | CTCAG | 4 cut(s) | 552, 613, 751, 1081 |
| BspDI | ATCGAT | 1 cut(s) | 438 |
| BspHI | TCATGA | 1 cut(s) | 79 |
| BspLI | GGNNCC | 1 cut(s) | 247 |
| BspMAI | CTGCAG | 1 cut(s) | 397 |
| BspPI | GGATC | 6 cut(s) | 166, 240, 253, 611, 826, 872 |
| BsrDI | GCAATG | 2 cut(s) | 858, 951 |
| BsrFI | RCCGGY | 1 cut(s) | 367 |
| BsrI | ACTGG | 1 cut(s) | 962 |
| BssAI | RCCGGY | 1 cut(s) | 367 |
| BssECI | CCNNGG | 4 cut(s) | 27, 241, 361, 981 |
| BssMI | GATC | 8 cut(s) | 158, 245, 435, 532, 616, 805, 831, 864 |
| BssNI | GRCGYC | 1 cut(s) | 1048 |
| BssT1I | CCWWGG | 3 cut(s) | 241, 361, 981 |
| Bst4CI | ACNGT | 4 cut(s) | 175, 343, 871, 990 |
| Bst6I | CTCTTC | 2 cut(s) | 528, 1055 |
| BstACI | GRCGYC | 1 cut(s) | 1048 |
| BstC8I | GCNNGC | 2 cut(s) | 421, 827 |
| BstDEI | CTNAG | 4 cut(s) | 539, 621, 759, 1089 |
| BstDSI | CCRYGG | 1 cut(s) | 27 |
| BstF5I | GGATG | 3 cut(s) | 55, 307, 654 |
| BstKTI | GATC | 8 cut(s) | 161, 248, 438, 535, 619, 808, 834, 867 |
| BstMAI | GTCTC | 4 cut(s) | 25, 40, 1178, 1231 |
| BstMBI | GATC | 8 cut(s) | 158, 245, 435, 532, 616, 805, 831, 864 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 38, 392, 482, 953 |
| BstNSI | RCATGY | 3 cut(s) | 829, 886, 1262 |
| BstSFI | CTRYAG | 1 cut(s) | 393 |
| BstV1I | GCAGC | 2 cut(s) | 379, 407 |
| BstV2I | GAAGAC | 1 cut(s) | 1212 |
| BstX2I | RGATCY | 3 cut(s) | 158, 245, 616 |
| BstYI | RGATCY | 3 cut(s) | 158, 245, 616 |
| Bsu15I | ATCGAT | 1 cut(s) | 438 |
| Bsu36I | CCTNAGG | 1 cut(s) | 621 |
| BsuI | GTATCC | 1 cut(s) | 88 |
| BsuRI | GGCC | 3 cut(s) | 240, 423, 571 |
| BsuTUI | ATCGAT | 1 cut(s) | 438 |
| BtgI | CCRYGG | 1 cut(s) | 27 |
| BtrI | CACGTC | 2 cut(s) | 14, 73 |
| BtsCI | GGATG | 3 cut(s) | 55, 307, 654 |
| BtsIMutI | CAGTG | 1 cut(s) | 986 |
| Cac8I | GCNNGC | 2 cut(s) | 421, 827 |
| CaiI | CAGNNNCTG | 1 cut(s) | 620 |
| CciI | TCATGA | 1 cut(s) | 79 |
| Cfr10I | RCCGGY | 1 cut(s) | 367 |
| Cfr13I | GGNCC | 3 cut(s) | 238, 365, 716 |
| ClaI | ATCGAT | 1 cut(s) | 438 |
| CseI | GACGC | 1 cut(s) | 1037 |
| CviAII | CATG | 7 cut(s) | 43, 80, 665, 754, 826, 883, 1259 |
| DdeI | CTNAG | 4 cut(s) | 539, 621, 759, 1089 |
| DpnI | GATC | 8 cut(s) | 160, 247, 437, 534, 618, 807, 833, 866 |
| DpnII | GATC | 8 cut(s) | 158, 245, 435, 532, 616, 805, 831, 864 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1245 |
| DriI | GACNNNNNGTC | 1 cut(s) | 17 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1245 |
| Eam1104I | CTCTTC | 2 cut(s) | 528, 1055 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 17 |
| EarI | CTCTTC | 2 cut(s) | 528, 1055 |
| Ecl136II | GAGCTC | 1 cut(s) | 791 |
| Eco130I | CCWWGG | 3 cut(s) | 241, 361, 981 |
| Eco147I | AGGCCT | 1 cut(s) | 571 |
| Eco24I | GRGCYC | 1 cut(s) | 793 |
| Eco47I | GGWCC | 2 cut(s) | 365, 716 |
| Eco53kI | GAGCTC | 1 cut(s) | 791 |
| Eco81I | CCTNAGG | 1 cut(s) | 621 |
| EcoICRI | GAGCTC | 1 cut(s) | 791 |
| EcoO109I | RGGNCCY | 1 cut(s) | 716 |
| EcoT14I | CCWWGG | 3 cut(s) | 241, 361, 981 |
| EcoT38I | GRGCYC | 1 cut(s) | 793 |
| ErhI | CCWWGG | 3 cut(s) | 241, 361, 981 |
| Esp3I | CGTCTC | 1 cut(s) | 40 |
| FaeI | CATG | 7 cut(s) | 46, 83, 668, 757, 829, 886, 1262 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 145, 177 |
| FatI | CATG | 7 cut(s) | 42, 79, 664, 753, 825, 882, 1258 |
| FauNDI | CATATG | 2 cut(s) | 264, 1030 |
| FbaI | TGATCA | 1 cut(s) | 532 |
| FblI | GTMKAC | 1 cut(s) | 10 |
| Fnu4HI | GCNGC | 2 cut(s) | 393, 396 |
| FokI | GGATG | 3 cut(s) | 42, 314, 661 |
| FriOI | GRGCYC | 1 cut(s) | 793 |
| Fsp4HI | GCNGC | 2 cut(s) | 393, 396 |
| FspBI | CTAG | 3 cut(s) | 936, 944, 1250 |
| GluI | GCNGC | 2 cut(s) | 393, 396 |
| GsuI | CTGGAG | 1 cut(s) | 801 |
| HaeIII | GGCC | 3 cut(s) | 240, 423, 571 |
| HapII | CCGG | 2 cut(s) | 368, 459 |
| HgaI | GACGC | 1 cut(s) | 1037 |
| Hin1I | GRCGYC | 1 cut(s) | 1048 |
| Hin1II | CATG | 7 cut(s) | 46, 83, 668, 757, 829, 886, 1262 |
| HincII | GTYRAC | 1 cut(s) | 270 |
| HindII | GTYRAC | 1 cut(s) | 270 |
| HinfI | GANTC | 7 cut(s) | 67, 401, 502, 675, 939, 1160, 1239 |
| HpaII | CCGG | 2 cut(s) | 368, 459 |
| HphI | GGTGA | 4 cut(s) | 102, 293, 997, 1069 |
| Hpy166II | GTNNAC | 4 cut(s) | 11, 270, 801, 1067 |
| Hpy188I | TCNGA | 5 cut(s) | 292, 642, 846, 1165, 1201 |
| Hpy8I | GTNNAC | 4 cut(s) | 11, 270, 801, 1067 |
| Hpy99I | CGWCG | 1 cut(s) | 1219 |
| HpyAV | CCTTC | 8 cut(s) | 69, 86, 629, 845, 884, 893, 1179, 1186 |
| HpyCH4III | ACNGT | 4 cut(s) | 175, 343, 871, 990 |
| HpyCH4IV | ACGT | 3 cut(s) | 13, 49, 72 |
| HpyCH4V | TGCA | 7 cut(s) | 320, 395, 601, 879, 886, 956, 1106 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 38, 392, 482, 953 |
| HpyF3I | CTNAG | 4 cut(s) | 539, 621, 759, 1089 |
| HpySE526I | ACGT | 3 cut(s) | 13, 49, 72 |
| Hsp92I | GRCGYC | 1 cut(s) | 1048 |
| Hsp92II | CATG | 7 cut(s) | 46, 83, 668, 757, 829, 886, 1262 |
| Ksp22I | TGATCA | 1 cut(s) | 532 |
| Kzo9I | GATC | 8 cut(s) | 158, 245, 435, 532, 616, 805, 831, 864 |
| LmnI | GCTCC | 1 cut(s) | 788 |
| Lsp1109I | GCAGC | 2 cut(s) | 379, 407 |
| LweI | GCATC | 3 cut(s) | 485, 588, 1115 |
| MaeI | CTAG | 3 cut(s) | 936, 944, 1250 |
| MaeII | ACGT | 3 cut(s) | 13, 49, 72 |
| MaeIII | GTNAC | 3 cut(s) | 68, 352, 676 |
| MalI | GATC | 8 cut(s) | 160, 247, 437, 534, 618, 807, 833, 866 |
| MboI | GATC | 8 cut(s) | 158, 245, 435, 532, 616, 805, 831, 864 |
| MboII | GAAGA | 5 cut(s) | 515, 1009, 1067, 1072, 1212 |
| MfeI | CAATTG | 2 cut(s) | 276, 692 |
| MflI | RGATCY | 3 cut(s) | 158, 245, 616 |
| MhlI | GDGCHC | 1 cut(s) | 793 |
| MlyI | GAGTC | 3 cut(s) | 76, 684, 1233 |
| MmeI | TCCRAC | 2 cut(s) | 157, 1035 |
| MseI | TTAA | 4 cut(s) | 488, 629, 1071, 1140 |
| MspI | CCGG | 2 cut(s) | 368, 459 |
| MunI | CAATTG | 2 cut(s) | 276, 692 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 38, 392, 482, 953 |
| NdeI | CATATG | 2 cut(s) | 264, 1030 |
| NdeII | GATC | 8 cut(s) | 158, 245, 435, 532, 616, 805, 831, 864 |
| NlaIII | CATG | 7 cut(s) | 46, 83, 668, 757, 829, 886, 1262 |
| NlaIV | GGNNCC | 1 cut(s) | 247 |
| NmuCI | GTSAC | 2 cut(s) | 68, 676 |
| NspI | RCATGY | 3 cut(s) | 829, 886, 1262 |
| PaeI | GCATGC | 1 cut(s) | 829 |
| PagI | TCATGA | 1 cut(s) | 79 |
| PceI | AGGCCT | 1 cut(s) | 571 |
| PfeI | GAWTC | 4 cut(s) | 401, 502, 939, 1160 |
| PkrI | GCNGC | 2 cut(s) | 394, 397 |
| PleI | GAGTC | 3 cut(s) | 75, 683, 1233 |
| PpsI | GAGTC | 3 cut(s) | 75, 683, 1233 |
| PpuMI | RGGWCCY | 1 cut(s) | 716 |
| Psp124BI | GAGCTC | 1 cut(s) | 793 |
| Psp5II | RGGWCCY | 1 cut(s) | 716 |
| PspN4I | GGNNCC | 1 cut(s) | 247 |
| PspPI | GGNCC | 3 cut(s) | 238, 365, 716 |
| PspPPI | RGGWCCY | 1 cut(s) | 716 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1158, 1190 |
| PstI | CTGCAG | 1 cut(s) | 397 |
| PstNI | CAGNNNCTG | 1 cut(s) | 620 |
| PsuI | RGATCY | 3 cut(s) | 158, 245, 616 |
| SacI | GAGCTC | 1 cut(s) | 793 |
| SaqAI | TTAA | 4 cut(s) | 488, 629, 1071, 1140 |
| SatI | GCNGC | 2 cut(s) | 393, 396 |
| Sau3AI | GATC | 8 cut(s) | 158, 245, 435, 532, 616, 805, 831, 864 |
| Sau96I | GGNCC | 3 cut(s) | 238, 365, 716 |
| SchI | GAGTC | 3 cut(s) | 76, 684, 1233 |
| SduI | GDGCHC | 1 cut(s) | 793 |
| SfaNI | GCATC | 3 cut(s) | 485, 588, 1115 |
| SfcI | CTRYAG | 1 cut(s) | 393 |
| SinI | GGWCC | 2 cut(s) | 365, 716 |
| SmlI | CTYRAG | 1 cut(s) | 1229 |
| SmoI | CTYRAG | 1 cut(s) | 1229 |
| SphI | GCATGC | 1 cut(s) | 829 |
| SseBI | AGGCCT | 1 cut(s) | 571 |
| SspMI | CTAG | 3 cut(s) | 936, 944, 1250 |
| SstI | GAGCTC | 1 cut(s) | 793 |
| StuI | AGGCCT | 1 cut(s) | 571 |
| StyI | CCWWGG | 3 cut(s) | 241, 361, 981 |
| TaaI | ACNGT | 4 cut(s) | 175, 343, 871, 990 |
| TaiI | ACGT | 3 cut(s) | 16, 52, 75 |
| TaqI | TCGA | 4 cut(s) | 170, 438, 505, 1190 |
| TfiI | GAWTC | 4 cut(s) | 401, 502, 939, 1160 |
| Tru1I | TTAA | 4 cut(s) | 488, 629, 1071, 1140 |
| Tru9I | TTAA | 4 cut(s) | 488, 629, 1071, 1140 |
| TscAI | CASTG | 1 cut(s) | 993 |
| TseFI | GTSAC | 2 cut(s) | 68, 676 |
| TseI | GCWGC | 2 cut(s) | 392, 395 |
| Tsp45I | GTSAC | 2 cut(s) | 68, 676 |
| TspDTI | ATGAA | 9 cut(s) | 51, 68, 242, 437, 681, 697, 715, 938, 1161 |
| TspGWI | ACGGA | 3 cut(s) | 661, 687, 759 |
| TspRI | CASTG | 1 cut(s) | 993 |
| VpaK11BI | GGWCC | 2 cut(s) | 365, 716 |
| XapI | RAATTY | 1 cut(s) | 1083 |
| XbaI | TCTAGA | 2 cut(s) | 935, 1249 |
| XceI | RCATGY | 3 cut(s) | 829, 886, 1262 |
| XmiI | GTMKAC | 1 cut(s) | 10 |
| XspI | CTAG | 3 cut(s) | 936, 944, 1250 |