Rmu_co8401665.1_g000001

Ribosomal protein L14p/L23e

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8401665.1
OG0000169
Physical Location & Seq
Reverse (-)
2 .. 369
368 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8401665.1_g000001.1.cds

Sequence Viewer

Length: 368 bp
atggcctccatagatgctgtcacagcaagctttgctgcttctcttgctctcgttgctggtggtagcgccctagatctgggaaagattagcggtggtcctgtgcgcaggtccttccaatcttttctgcttagcaaacctttgacctgcaagccggtagatcccaaagctcactgtcatcgcaattggatggtggacaaggaatttagggttcaggaaaaggctagtaacatattcttgttctcttttgaatcagtgcgtgatcgcaataaggtacttcgaggtgaggtttggaatttcgatcgagccccaatttgttttgaagagtatgactgcatcaagcctcttcatgaagcccagtttaagcatat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribosomal_L14

Protein Analysis

122

Amino Acids

13.73

Weight (kDa)

8.76

Isoelectric Point (pI)

37.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 104
Acc36I ACCTGC 2 cut(s) 96, 152
AciI CCGC 1 cut(s) 90
AclWI GGATC 1 cut(s) 152
AcsI RAATTY 2 cut(s) 200, 292
AfaI GTAC 1 cut(s) 273
AfiI CCNNNNNNNGG 1 cut(s) 76
AgsI TTSAA 2 cut(s) 248, 320
AluBI AGCT 2 cut(s) 30, 167
AluI AGCT 2 cut(s) 30, 167
AlwI GGATC 1 cut(s) 152
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 35
ApoI RAATTY 2 cut(s) 200, 292
AspLEI GCGC 2 cut(s) 68, 105
AspS9I GGNCC 2 cut(s) 95, 108
AsuHPI GGTGA 1 cut(s) 293
AvaII GGWCC 2 cut(s) 95, 108
BanII GRGCYC 1 cut(s) 307
BbvI GCAGC 1 cut(s) 22
BccI CCATC 1 cut(s) 181
BfaI CTAG 2 cut(s) 71, 222
BfoI RGCGCY 1 cut(s) 69
BfuAI ACCTGC 2 cut(s) 96, 152
BglII AGATCT 1 cut(s) 73
BisI GCNGC 1 cut(s) 36
BlpI GCTNAGC 1 cut(s) 128
BlsI GCNGC 1 cut(s) 37
Bme18I GGWCC 2 cut(s) 95, 108
BmgT120I GGNCC 2 cut(s) 95, 108
BmrI ACTGGG 1 cut(s) 349
BmsI GCATC 2 cut(s) 4, 342
BmuI ACTGGG 1 cut(s) 349
Bpu1102I GCTNAGC 1 cut(s) 128
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse118I RCCGGY 1 cut(s) 151
Bse1I ACTGG 1 cut(s) 355
BseGI GGATG 1 cut(s) 192
BseLI CCNNNNNNNGG 1 cut(s) 76
BseNI ACTGG 1 cut(s) 355
BseXI GCAGC 1 cut(s) 22
Bsh1285I CGRYCG 1 cut(s) 301
BshFI GGCC 1 cut(s) 5
BsiEI CGRYCG 1 cut(s) 301
BsiSI CCGG 1 cut(s) 152
BslI CCNNNNNNNGG 1 cut(s) 76
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 307
Bsp143I GATC 4 cut(s) 73, 157, 259, 298
Bsp1720I GCTNAGC 1 cut(s) 128
BspACI CCGC 1 cut(s) 90
BspANI GGCC 1 cut(s) 5
BspHI TCATGA 1 cut(s) 346
BspMI ACCTGC 2 cut(s) 96, 152
BspPI GGATC 1 cut(s) 152
BsrFI RCCGGY 1 cut(s) 151
BsrI ACTGG 1 cut(s) 355
BssAI RCCGGY 1 cut(s) 151
BssMI GATC 4 cut(s) 73, 157, 259, 298
Bst4CI ACNGT 1 cut(s) 173
Bst6I CTCTTC 2 cut(s) 315, 348
BstAPI GCANNNNNTGC 1 cut(s) 32
BstC8I GCNNGC 2 cut(s) 28, 149
BstDEI CTNAG 1 cut(s) 128
BstF5I GGATG 1 cut(s) 192
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 2 cut(s) 68, 105
BstKTI GATC 4 cut(s) 76, 160, 262, 301
BstMBI GATC 4 cut(s) 73, 157, 259, 298
BstMCI CGRYCG 1 cut(s) 301
BstMWI GCNNNNNNNGC 4 cut(s) 23, 32, 44, 53
BstV1I GCAGC 1 cut(s) 22
BstX2I RGATCY 2 cut(s) 73, 157
BstYI RGATCY 2 cut(s) 73, 157
BsuRI GGCC 1 cut(s) 5
BtgZI GCGATG 1 cut(s) 161
BtsCI GGATG 1 cut(s) 192
BtsIMutI CAGTG 2 cut(s) 169, 258
BveI ACCTGC 2 cut(s) 96, 152
Cac8I GCNNGC 2 cut(s) 28, 149
CciI TCATGA 1 cut(s) 346
CfoI GCGC 2 cut(s) 68, 105
Cfr10I RCCGGY 1 cut(s) 151
Cfr13I GGNCC 2 cut(s) 95, 108
Csp6I GTAC 1 cut(s) 272
CviAII CATG 1 cut(s) 347
CviJI RGCY 8 cut(s) 5, 30, 151, 167, 221, 305, 340, 353
CviKI_1 RGCY 8 cut(s) 5, 30, 151, 167, 221, 305, 340, 353
CviQI GTAC 1 cut(s) 272
DdeI CTNAG 1 cut(s) 128
DpnI GATC 4 cut(s) 75, 159, 261, 300
DpnII GATC 4 cut(s) 73, 157, 259, 298
Eam1104I CTCTTC 2 cut(s) 315, 348
EarI CTCTTC 2 cut(s) 315, 348
Eco24I GRGCYC 1 cut(s) 307
Eco47I GGWCC 2 cut(s) 95, 108
EcoO109I RGGNCCY 1 cut(s) 108
EcoT38I GRGCYC 1 cut(s) 307
FaeI CATG 1 cut(s) 350
FaiI YATR 5 cut(s) 11, 230, 327, 348, 366
FatI CATG 1 cut(s) 346
Fnu4HI GCNGC 1 cut(s) 36
FokI GGATG 1 cut(s) 199
FriOI GRGCYC 1 cut(s) 307
Fsp4HI GCNGC 1 cut(s) 36
FspBI CTAG 2 cut(s) 71, 222
FspI TGCGCA 1 cut(s) 104
GlaI GCGC 2 cut(s) 67, 104
GluI GCNGC 1 cut(s) 36
HaeII RGCGCY 1 cut(s) 69
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 152
HhaI GCGC 2 cut(s) 68, 105
Hin1II CATG 1 cut(s) 350
Hin6I GCGC 2 cut(s) 66, 103
HinP1I GCGC 2 cut(s) 66, 103
HindIII AAGCTT 1 cut(s) 28
HinfI GANTC 1 cut(s) 248
HpaII CCGG 1 cut(s) 152
HphI GGTGA 1 cut(s) 293
Hpy166II GTNNAC 1 cut(s) 193
Hpy188III TCNNGA 2 cut(s) 212, 347
Hpy8I GTNNAC 1 cut(s) 193
HpyAV CCTTC 1 cut(s) 121
HpyCH4III ACNGT 1 cut(s) 173
HpyCH4V TGCA 2 cut(s) 147, 333
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 32, 44, 53
HpyF3I CTNAG 1 cut(s) 128
Hsp92II CATG 1 cut(s) 350
HspAI GCGC 2 cut(s) 66, 103
Kzo9I GATC 4 cut(s) 73, 157, 259, 298
LpnPI CCDG 7 cut(s) 42, 62, 91, 111, 157, 165, 197
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 2 cut(s) 4, 342
MaeI CTAG 2 cut(s) 71, 222
MaeIII GTNAC 2 cut(s) 19, 224
MalI GATC 4 cut(s) 75, 159, 261, 300
MboI GATC 4 cut(s) 73, 157, 259, 298
MboII GAAGA 2 cut(s) 332, 335
MfeI CAATTG 1 cut(s) 181
MflI RGATCY 2 cut(s) 73, 157
MhlI GDGCHC 1 cut(s) 307
MluCI AATT 4 cut(s) 181, 200, 292, 309
MnlI CCTC 4 cut(s) 16, 272, 277, 351
MseI TTAA 1 cut(s) 360
MspI CCGG 1 cut(s) 152
MunI CAATTG 1 cut(s) 181
MwoI GCNNNNNNNGC 4 cut(s) 23, 32, 44, 53
NdeII GATC 4 cut(s) 73, 157, 259, 298
NlaIII CATG 1 cut(s) 350
NmuCI GTSAC 1 cut(s) 19
NsbI TGCGCA 1 cut(s) 104
PagI TCATGA 1 cut(s) 346
PfeI GAWTC 1 cut(s) 248
PkrI GCNGC 1 cut(s) 37
Ple19I CGATCG 1 cut(s) 301
PpuMI RGGWCCY 1 cut(s) 108
Psp5II RGGWCCY 1 cut(s) 108
PspPI GGNCC 2 cut(s) 95, 108
PspPPI RGGWCCY 1 cut(s) 108
PsuI RGATCY 2 cut(s) 73, 157
PvuI CGATCG 1 cut(s) 301
RsaI GTAC 1 cut(s) 273
RsaNI GTAC 1 cut(s) 272
SaqAI TTAA 1 cut(s) 360
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 4 cut(s) 73, 157, 259, 298
Sau96I GGNCC 2 cut(s) 95, 108
SduI GDGCHC 1 cut(s) 307
SetI ASST 8 cut(s) 32, 110, 139, 146, 169, 273, 283, 288
SfaNI GCATC 2 cut(s) 4, 342
SinI GGWCC 2 cut(s) 95, 108
Sse9I AATT 4 cut(s) 181, 200, 292, 309
SsiI CCGC 1 cut(s) 90
SspMI CTAG 2 cut(s) 71, 222
TaaI ACNGT 1 cut(s) 173
TaqI TCGA 3 cut(s) 277, 297, 301
TasI AATT 4 cut(s) 181, 200, 292, 309
TfiI GAWTC 1 cut(s) 248
Tru1I TTAA 1 cut(s) 360
Tru9I TTAA 1 cut(s) 360
TscAI CASTG 2 cut(s) 176, 258
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 1 cut(s) 35
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 2 cut(s) 335, 363
TspRI CASTG 2 cut(s) 176, 258
VpaK11BI GGWCC 2 cut(s) 95, 108
XapI RAATTY 2 cut(s) 200, 292
XspI CTAG 2 cut(s) 71, 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.