Rmu_sc0003511.1_g000042

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003511.1
OG0000169
Physical Location & Seq
Reverse (-)
192453 .. 193691
1239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003511.1_g000042.1.cds

Sequence Viewer

Length: 1239 bp
atggcatccattgacgcggtaacggcgagttttgctgcctcgcttgccttggccgaagggggacgtgcccctgacttggggaagcttggcggaggtcccgtgcggaagtcctcccaatcttttctcctcggaaagcctttgactcggaaacccatcgacccaaaggcattcatgtctcactttcaccgaacctggttggtggataaggattttagggttcaagagcgtcctggggacctgttcttgttctctttcgctgctgcacgtgatcgaaacaaggttcttcgagggggcgtatggtgttttgaccgagccccggtctgttttgaagtgtacgatggagtcaagcctctgcatgaacttccatttaaacatctgcggatctggactagggtttctggcatacctcctctgtatgaagaacccgagaatctcatcttgattggcaaccttttgggcggctttttggaatatgacaagaaggaattcaagaagggggtgattagagttttattcactcatgacatatctaaaccaatcctgatggaaagacaagtcttcctagatactggggtcgaaccagtactgcagtttcaattcgagcatctgcgggggagatgcactcaatgtggtttgctcacacatgctggcctttcttgtgaggaacccacagcagtaaaccctacacctagggttttacactttcctggcgtttcaacctcaaggaactcctttgctttctctgctaagcatcagggagaccttctctccccttccccgactgtcccaaggaagaagcggcctggttttcatcgagtggagcgcccaacctccttttctcccagtgagtcggctccaaaaatagtcaagactggtgaggttcccgaactggctattcctagcgacactgttactactccaggtacacagaagcaccagcctgttttgctatccaaaaaacgggagcgtggtggtgctggccatcctagtcccaagaagtttaaaacaatcttgggtggcaagattccaacactgcacgctgaggctcttggtctcattgaggaggatgacgacctcactttggtctcgttgaaaaagaaatctggtaggcctcttggaagcaagaataaggctcatcgtgcaaacaagaagctggatggtattcccctgaagattacctatcctactagtactgaaactggtcctagccctagggacaagggcaaaggaaagagttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

412

Amino Acids

45.33

Weight (kDa)

9.83

Isoelectric Point (pI)

36.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 17
AciI CCGC 7 cut(s) 17, 90, 103, 379, 459, 610, 799
AclWI GGATC 1 cut(s) 389
AcoI YGGCCR 2 cut(s) 51, 979
AcsI RAATTY 1 cut(s) 485
AcuI CTGAAG 1 cut(s) 1190
AcvI CACGTG 1 cut(s) 266
AfaI GTAC 4 cut(s) 335, 585, 925, 1192
AfiI CCNNNNNNNGG 5 cut(s) 76, 77, 316, 960, 1081
AgsI TTSAA 6 cut(s) 221, 329, 490, 596, 717, 1093
AhlI ACTAGT 1 cut(s) 1187
AjiI CACGTC 1 cut(s) 65
AjnI CCWGG 5 cut(s) 191, 229, 706, 802, 919
AjuI GAANNNNNNNTTGG 2 cut(s) 820, 852
AluBI AGCT 2 cut(s) 85, 1153
AluI AGCT 2 cut(s) 85, 1153
Alw26I GTCTC 4 cut(s) 180, 753, 1058, 1090
AlwI GGATC 1 cut(s) 389
Ama87I CYCGRG 1 cut(s) 425
AoxI GGCC 5 cut(s) 51, 649, 800, 979, 1109
ApeKI GCWGC 3 cut(s) 35, 257, 260
ApoI RAATTY 1 cut(s) 485
Asp700I GAANNNNTTC 1 cut(s) 485
AspA2I CCTAGG 2 cut(s) 689, 1211
AspLEI GCGC 1 cut(s) 825
AspS9I GGNCC 3 cut(s) 95, 235, 1202
AsuC2I CCSGG 1 cut(s) 317
AsuHPI GGTGA 3 cut(s) 176, 511, 887
AvaI CYCGRG 1 cut(s) 425
AvaII GGWCC 3 cut(s) 95, 235, 1202
AvrII CCTAGG 2 cut(s) 689, 1211
BaeGI GKGCMC 1 cut(s) 70
BaeI ACNNNNGTAYC 2 cut(s) 558, 591
BalI TGGCCA 1 cut(s) 981
BanII GRGCYC 1 cut(s) 316
BbrPI CACGTG 1 cut(s) 266
BbsI GAAGAC 1 cut(s) 550
BbvCI CCTCAGC 1 cut(s) 1041
BbvI GCAGC 3 cut(s) 22, 244, 247
BccI CCATC 5 cut(s) 161, 332, 538, 990, 1151
BceAI ACGGC 1 cut(s) 39
BciT130I CCWGG 5 cut(s) 193, 231, 708, 804, 921
BcnI CCSGG 1 cut(s) 317
BcoDI GTCTC 4 cut(s) 180, 753, 1058, 1090
BcuI ACTAGT 1 cut(s) 1187
BfaI CTAG 8 cut(s) 390, 563, 690, 900, 987, 1188, 1206, 1212
BfmI CTRYAG 1 cut(s) 587
BfoI RGCGCY 1 cut(s) 826
BisI GCNGC 5 cut(s) 36, 258, 261, 460, 800
BlnI CCTAGG 2 cut(s) 689, 1211
BlpI GCTNAGC 1 cut(s) 747
BlsI GCNGC 5 cut(s) 37, 259, 262, 461, 801
BmcAI AGTACT 2 cut(s) 585, 1192
Bme1390I CCNGG 6 cut(s) 193, 231, 317, 708, 804, 921
Bme18I GGWCC 3 cut(s) 95, 235, 1202
BmeT110I CYCGRG 1 cut(s) 425
BmgBI CACGTC 1 cut(s) 65
BmgT120I GGNCC 3 cut(s) 95, 235, 1202
BmiI GGNNCC 5 cut(s) 97, 236, 666, 855, 882
BmrFI CCNGG 6 cut(s) 193, 231, 317, 708, 804, 921
BmrI ACTGGG 2 cut(s) 579, 837
BmsI GCATC 4 cut(s) 14, 608, 613, 760
BmuI ACTGGG 2 cut(s) 579, 837
BpiI GAAGAC 1 cut(s) 550
BplI GAGNNNNNCTC 4 cut(s) 607, 639, 750, 782
BpmI CTGGAG 1 cut(s) 903
Bpu10I CCTNAGC 1 cut(s) 1041
Bpu1102I GCTNAGC 1 cut(s) 747
BpuEI CTTGAG 1 cut(s) 706
BpuMI CCSGG 1 cut(s) 317
BsaAI YACGTR 1 cut(s) 266
BsaI GGTCTC 3 cut(s) 753, 1058, 1090
BsaJI CCNNGG 7 cut(s) 48, 127, 230, 315, 689, 788, 1211
BsaXI ACNNNNNCTCC 4 cut(s) 84, 114, 752, 782
Bsc4I CCNNNNNNNGG 5 cut(s) 76, 77, 316, 960, 1081
Bse1I ACTGG 6 cut(s) 574, 581, 843, 877, 894, 1204
BseBI CCWGG 5 cut(s) 193, 231, 708, 804, 921
BseDI CCNNGG 7 cut(s) 48, 127, 230, 315, 689, 788, 1211
BseGI GGATG 4 cut(s) 5, 982, 1072, 1162
BseLI CCNNNNNNNGG 5 cut(s) 76, 77, 316, 960, 1081
BseMII CTCAG 1 cut(s) 1032
BseNI ACTGG 6 cut(s) 574, 581, 843, 877, 894, 1204
BseRI GAGGAG 3 cut(s) 116, 399, 1076
BseSI GKGCMC 1 cut(s) 70
BseXI GCAGC 3 cut(s) 22, 244, 247
BsgI GTGCAG 2 cut(s) 246, 1019
Bsh1236I CGCG 1 cut(s) 17
BshFI GGCC 5 cut(s) 53, 651, 802, 981, 1111
BsiHKCI CYCGRG 1 cut(s) 425
BsiSI CCGG 1 cut(s) 317
BslFI GGGAC 6 cut(s) 75, 81, 248, 770, 975, 1229
BslI CCNNNNNNNGG 5 cut(s) 76, 77, 316, 960, 1081
BsmAI GTCTC 4 cut(s) 180, 753, 1058, 1090
BsmFI GGGAC 6 cut(s) 75, 81, 248, 770, 975, 1229
BsmI GAATGC 1 cut(s) 167
BsnI GGCC 5 cut(s) 53, 651, 802, 981, 1111
Bso31I GGTCTC 3 cut(s) 753, 1058, 1090
BsoBI CYCGRG 1 cut(s) 425
Bsp1286I GDGCHC 2 cut(s) 70, 316
Bsp143I GATC 2 cut(s) 268, 381
Bsp1720I GCTNAGC 1 cut(s) 747
BspACI CCGC 7 cut(s) 17, 90, 103, 379, 459, 610, 799
BspANI GGCC 5 cut(s) 53, 651, 802, 981, 1111
BspCNI CTCAG 1 cut(s) 1033
BspFNI CGCG 1 cut(s) 17
BspHI TCATGA 1 cut(s) 520
BspLI GGNNCC 5 cut(s) 97, 236, 666, 855, 882
BspMAI CTGCAG 1 cut(s) 591
BspPI GGATC 1 cut(s) 389
BspTNI GGTCTC 3 cut(s) 753, 1058, 1090
BsrI ACTGG 6 cut(s) 574, 581, 843, 877, 894, 1204
BssECI CCNNGG 7 cut(s) 48, 127, 230, 315, 689, 788, 1211
BssMI GATC 2 cut(s) 268, 381
BssT1I CCWWGG 4 cut(s) 48, 689, 788, 1211
Bst2UI CCWGG 5 cut(s) 193, 231, 708, 804, 921
Bst4CI ACNGT 2 cut(s) 784, 910
BstBAI YACGTR 1 cut(s) 266
BstC8I GCNNGC 4 cut(s) 45, 649, 979, 1038
BstDEI CTNAG 2 cut(s) 747, 1041
BstF5I GGATG 4 cut(s) 5, 982, 1072, 1162
BstFNI CGCG 1 cut(s) 17
BstH2I RGCGCY 1 cut(s) 826
BstHHI GCGC 1 cut(s) 825
BstKTI GATC 2 cut(s) 271, 384
BstMAI GTCTC 4 cut(s) 180, 753, 1058, 1090
BstMBI GATC 2 cut(s) 268, 381
BstMWI GCNNNNNNNGC 6 cut(s) 23, 32, 44, 743, 946, 1139
BstNI CCWGG 5 cut(s) 193, 231, 708, 804, 921
BstNSI RCATGY 1 cut(s) 647
BstSCI CCNGG 6 cut(s) 191, 229, 315, 706, 802, 919
BstSFI CTRYAG 1 cut(s) 587
BstSLI GKGCMC 1 cut(s) 70
BstUI CGCG 1 cut(s) 17
BstV1I GCAGC 3 cut(s) 22, 244, 247
BstV2I GAAGAC 1 cut(s) 550
BstX2I RGATCY 1 cut(s) 381
BstYI RGATCY 1 cut(s) 381
BsuRI GGCC 5 cut(s) 53, 651, 802, 981, 1111
BtrI CACGTC 1 cut(s) 65
BtsCI GGATG 4 cut(s) 5, 982, 1072, 1162
BtsI GCAGTG 1 cut(s) 1031
BtsIMutI CAGTG 3 cut(s) 850, 906, 1031
Cac8I GCNNGC 4 cut(s) 45, 649, 979, 1038
CciI TCATGA 1 cut(s) 520
CfoI GCGC 1 cut(s) 825
Cfr13I GGNCC 3 cut(s) 95, 235, 1202
CseI GACGC 2 cut(s) 23, 215
CsiI ACCWGGT 1 cut(s) 191
Csp6I GTAC 4 cut(s) 334, 584, 924, 1191
CviAII CATG 4 cut(s) 172, 356, 521, 644
CviQI GTAC 4 cut(s) 334, 584, 924, 1191
DdeI CTNAG 2 cut(s) 747, 1041
DpnI GATC 2 cut(s) 270, 383
DpnII GATC 2 cut(s) 268, 381
DraI TTTAAA 2 cut(s) 370, 1003
EaeI YGGCCR 2 cut(s) 51, 979
EciI GGCGGA 1 cut(s) 105
Eco130I CCWWGG 4 cut(s) 48, 689, 788, 1211
Eco147I AGGCCT 1 cut(s) 1111
Eco24I GRGCYC 1 cut(s) 316
Eco31I GGTCTC 3 cut(s) 753, 1058, 1090
Eco47I GGWCC 3 cut(s) 95, 235, 1202
Eco57I CTGAAG 1 cut(s) 1190
Eco72I CACGTG 1 cut(s) 266
Eco88I CYCGRG 1 cut(s) 425
EcoO109I RGGNCCY 2 cut(s) 95, 235
EcoRI GAATTC 1 cut(s) 485
EcoRII CCWGG 5 cut(s) 191, 229, 706, 802, 919
EcoT14I CCWWGG 4 cut(s) 48, 689, 788, 1211
EcoT38I GRGCYC 1 cut(s) 316
ErhI CCWWGG 4 cut(s) 48, 689, 788, 1211
FaeI CATG 4 cut(s) 175, 359, 524, 647
FaiI YATR 9 cut(s) 173, 298, 357, 404, 417, 474, 522, 527, 645
FaqI GGGAC 6 cut(s) 75, 81, 248, 770, 975, 1229
FatI CATG 4 cut(s) 171, 355, 520, 643
FauI CCCGC 1 cut(s) 603
Fnu4HI GCNGC 5 cut(s) 36, 258, 261, 460, 800
FokI GGATG 3 cut(s) 969, 1079, 1169
FriOI GRGCYC 1 cut(s) 316
Fsp4HI GCNGC 5 cut(s) 36, 258, 261, 460, 800
FspBI CTAG 8 cut(s) 390, 563, 690, 900, 987, 1188, 1206, 1212
GlaI GCGC 1 cut(s) 824
GluI GCNGC 5 cut(s) 36, 258, 261, 460, 800
GsuI CTGGAG 1 cut(s) 903
HaeII RGCGCY 1 cut(s) 826
HaeIII GGCC 5 cut(s) 53, 651, 802, 981, 1111
HapII CCGG 1 cut(s) 317
HgaI GACGC 2 cut(s) 23, 215
HhaI GCGC 1 cut(s) 825
Hin1II CATG 4 cut(s) 175, 359, 524, 647
Hin6I GCGC 1 cut(s) 823
HinP1I GCGC 1 cut(s) 823
HindIII AAGCTT 1 cut(s) 83
HinfI GANTC 5 cut(s) 142, 342, 430, 848, 1024
HpaII CCGG 1 cut(s) 317
HphI GGTGA 3 cut(s) 176, 511, 887
Hpy166II GTNNAC 3 cut(s) 334, 679, 926
Hpy188I TCNGA 2 cut(s) 131, 147
Hpy188III TCNNGA 8 cut(s) 221, 385, 439, 490, 521, 541, 868, 884
Hpy8I GTNNAC 3 cut(s) 334, 679, 926
HpyAV CCTTC 5 cut(s) 50, 475, 487, 773, 783
HpyCH4III ACNGT 2 cut(s) 784, 910
HpyCH4IV ACGT 2 cut(s) 64, 265
HpyCH4V TGCA 6 cut(s) 263, 355, 589, 621, 1036, 1142
HpyF10VI GCNNNNNNNGC 6 cut(s) 23, 32, 44, 743, 946, 1139
HpyF3I CTNAG 2 cut(s) 747, 1041
HpySE526I ACGT 2 cut(s) 64, 265
Hsp92II CATG 4 cut(s) 175, 359, 524, 647
HspAI GCGC 1 cut(s) 823
Kzo9I GATC 2 cut(s) 268, 381
LmnI GCTCC 3 cut(s) 820, 859, 964
Lsp1109I GCAGC 3 cut(s) 22, 244, 247
LweI GCATC 4 cut(s) 14, 608, 613, 760
MabI ACCWGGT 1 cut(s) 191
MaeI CTAG 8 cut(s) 390, 563, 690, 900, 987, 1188, 1206, 1212
MaeII ACGT 2 cut(s) 64, 265
MaeIII GTNAC 2 cut(s) 19, 910
MalI GATC 2 cut(s) 270, 383
MboI GATC 2 cut(s) 268, 381
MboII GAAGA 5 cut(s) 275, 431, 550, 805, 1183
MflI RGATCY 1 cut(s) 381
MhlI GDGCHC 2 cut(s) 70, 316
MlsI TGGCCA 1 cut(s) 981
MluCI AATT 2 cut(s) 485, 596
MluNI TGGCCA 1 cut(s) 981
MlyI GAGTC 3 cut(s) 136, 351, 857
MmeI TCCRAC 1 cut(s) 1052
Mox20I TGGCCA 1 cut(s) 981
MroXI GAANNNNTTC 1 cut(s) 485
MscI TGGCCA 1 cut(s) 981
MseI TTAA 3 cut(s) 369, 1002, 1237
Msp20I TGGCCA 1 cut(s) 981
MspI CCGG 1 cut(s) 317
MspR9I CCNGG 6 cut(s) 193, 231, 317, 708, 804, 921
Mva1269I GAATGC 1 cut(s) 167
MvaI CCWGG 5 cut(s) 193, 231, 708, 804, 921
MvnI CGCG 1 cut(s) 17
MwoI GCNNNNNNNGC 6 cut(s) 23, 32, 44, 743, 946, 1139
NciI CCSGG 1 cut(s) 317
NdeII GATC 2 cut(s) 268, 381
NlaIII CATG 4 cut(s) 175, 359, 524, 647
NlaIV GGNNCC 5 cut(s) 97, 236, 666, 855, 882
NspI RCATGY 1 cut(s) 647
PagI TCATGA 1 cut(s) 520
PceI AGGCCT 1 cut(s) 1111
PctI GAATGC 1 cut(s) 167
PdmI GAANNNNTTC 1 cut(s) 485
PfeI GAWTC 2 cut(s) 430, 1024
PkrI GCNGC 5 cut(s) 37, 259, 262, 461, 801
PleI GAGTC 3 cut(s) 136, 350, 856
PmaCI CACGTG 1 cut(s) 266
PmlI CACGTG 1 cut(s) 266
PpsI GAGTC 3 cut(s) 136, 350, 856
Ppu21I YACGTR 1 cut(s) 266
PpuMI RGGWCCY 2 cut(s) 95, 235
Psp5II RGGWCCY 2 cut(s) 95, 235
Psp6I CCWGG 5 cut(s) 191, 229, 706, 802, 919
PspCI CACGTG 1 cut(s) 266
PspGI CCWGG 5 cut(s) 191, 229, 706, 802, 919
PspN4I GGNNCC 5 cut(s) 97, 236, 666, 855, 882
PspPI GGNCC 3 cut(s) 95, 235, 1202
PspPPI RGGWCCY 2 cut(s) 95, 235
PstI CTGCAG 1 cut(s) 591
PsuI RGATCY 1 cut(s) 381
RsaI GTAC 4 cut(s) 335, 585, 925, 1192
RsaNI GTAC 4 cut(s) 334, 584, 924, 1191
SaqAI TTAA 3 cut(s) 369, 1002, 1237
SatI GCNGC 5 cut(s) 36, 258, 261, 460, 800
Sau3AI GATC 2 cut(s) 268, 381
Sau96I GGNCC 3 cut(s) 95, 235, 1202
ScaI AGTACT 2 cut(s) 585, 1192
SchI GAGTC 3 cut(s) 136, 351, 857
ScrFI CCNGG 6 cut(s) 193, 231, 317, 708, 804, 921
SduI GDGCHC 2 cut(s) 70, 316
SexAI ACCWGGT 1 cut(s) 191
SfaNI GCATC 4 cut(s) 14, 608, 613, 760
SfcI CTRYAG 1 cut(s) 587
SinI GGWCC 3 cut(s) 95, 235, 1202
SmlI CTYRAG 1 cut(s) 721
SmoI CTYRAG 1 cut(s) 721
SpeI ACTAGT 1 cut(s) 1187
Sse9I AATT 2 cut(s) 485, 596
SseBI AGGCCT 1 cut(s) 1111
SsiI CCGC 7 cut(s) 17, 90, 103, 379, 459, 610, 799
SspMI CTAG 8 cut(s) 390, 563, 690, 900, 987, 1188, 1206, 1212
StuI AGGCCT 1 cut(s) 1111
StyD4I CCNGG 6 cut(s) 191, 229, 315, 706, 802, 919
StyI CCWWGG 4 cut(s) 48, 689, 788, 1211
TaaI ACNGT 2 cut(s) 784, 910
TaiI ACGT 2 cut(s) 67, 268
TaqI TCGA 6 cut(s) 156, 271, 286, 576, 600, 814
TaqII GACCGA 1 cut(s) 324
TasI AATT 2 cut(s) 485, 596
TatI WGTACW 2 cut(s) 583, 1190
TauI GCSGC 2 cut(s) 462, 802
TfiI GAWTC 2 cut(s) 430, 1024
Tru1I TTAA 3 cut(s) 369, 1002, 1237
Tru9I TTAA 3 cut(s) 369, 1002, 1237
TscAI CASTG 3 cut(s) 850, 913, 1038
TseI GCWGC 3 cut(s) 35, 257, 260
TspDTI ATGAA 4 cut(s) 160, 372, 432, 800
TspRI CASTG 3 cut(s) 850, 913, 1038
VpaK11BI GGWCC 3 cut(s) 95, 235, 1202
XapI RAATTY 1 cut(s) 485
XceI RCATGY 1 cut(s) 647
XmaJI CCTAGG 2 cut(s) 689, 1211
XmnI GAANNNNTTC 1 cut(s) 485
XspI CTAG 8 cut(s) 390, 563, 690, 900, 987, 1188, 1206, 1212
ZrmI AGTACT 2 cut(s) 585, 1192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.