Rmu_sc0020600.1_g000003

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020600.1
OG0000169
Physical Location & Seq
Forward (+)
2196 .. 2677
482 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020600.1_g000003.1.cds

Sequence Viewer

Length: 387 bp
atggcttcaatcgacaccgtcactgccagttttgcagcctctctggctcttgctgaagggggtaacgccccggatctggggaatattggaggagacgtggatggtggagaaggatttcaggattcaagagaagactggcaacctattcctgttctccttgattcggtccgggatcagaacaaggtgctttggggtggtgtgtggtgctttgacaaagccctaatatgtctggaggagtatgatggtgttcttcccatcgttgaagtccctctgaagcatgttaggatgtgggttagggttgctgacatccctcctctctacgaggaacctgacaatttcatcctcattggaaacctgctgggtggttatctggacaacgataagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283

Protein Analysis

128

Amino Acids

13.94

Weight (kDa)

4.05

Isoelectric Point (pI)

36.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 363
AclWI GGATC 2 cut(s) 81, 180
AcuI CTGAAG 2 cut(s) 75, 293
AfiI CCNNNNNNNGG 3 cut(s) 76, 77, 163
AgsI TTSAA 3 cut(s) 9, 126, 263
AjiI CACGTC 1 cut(s) 97
Alw26I GTCTC 1 cut(s) 87
AlwI GGATC 2 cut(s) 81, 180
ApeKI GCWGC 1 cut(s) 35
Asp700I GAANNNNTTC 1 cut(s) 114
AspS9I GGNCC 1 cut(s) 166
AsuC2I CCSGG 2 cut(s) 71, 170
AvaII GGWCC 1 cut(s) 166
BbsI GAAGAC 1 cut(s) 138
BbvI GCAGC 1 cut(s) 47
BccI CCATC 3 cut(s) 95, 236, 263
BcnI CCSGG 2 cut(s) 71, 170
BcoDI GTCTC 1 cut(s) 87
BfuAI ACCTGC 1 cut(s) 363
BglI GCCNNNNNGGC 1 cut(s) 44
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
Bme1390I CCNGG 2 cut(s) 71, 170
Bme18I GGWCC 1 cut(s) 166
BmgBI CACGTC 1 cut(s) 97
BmgT120I GGNCC 1 cut(s) 166
BmiI GGNNCC 1 cut(s) 327
BmrFI CCNGG 2 cut(s) 71, 170
BpiI GAAGAC 1 cut(s) 138
BpmI CTGGAG 1 cut(s) 251
BpuMI CCSGG 2 cut(s) 71, 170
BsaJI CCNNGG 1 cut(s) 69
BsaXI ACNNNNNCTCC 2 cut(s) 81, 111
Bsc4I CCNNNNNNNGG 3 cut(s) 76, 77, 163
Bse1I ACTGG 2 cut(s) 27, 140
BseDI CCNNGG 1 cut(s) 69
BseGI GGATG 4 cut(s) 106, 291, 306, 339
BseLI CCNNNNNNNGG 3 cut(s) 76, 77, 163
BseNI ACTGG 2 cut(s) 27, 140
BseRI GAGGAG 3 cut(s) 105, 248, 303
BseXI GCAGC 1 cut(s) 47
BseYI CCCAGC 1 cut(s) 358
BsiSI CCGG 2 cut(s) 71, 169
BslFI GGGAC 1 cut(s) 251
BslI CCNNNNNNNGG 3 cut(s) 76, 77, 163
BsmAI GTCTC 1 cut(s) 87
BsmBI CGTCTC 1 cut(s) 87
BsmFI GGGAC 1 cut(s) 251
Bsp143I GATC 2 cut(s) 73, 172
BspLI GGNNCC 1 cut(s) 327
BspMI ACCTGC 1 cut(s) 363
BspPI GGATC 2 cut(s) 81, 180
BsrI ACTGG 2 cut(s) 27, 140
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 2 cut(s) 73, 172
Bst4CI ACNGT 1 cut(s) 19
BstF5I GGATG 4 cut(s) 106, 291, 306, 339
BstKTI GATC 2 cut(s) 76, 175
BstMAI GTCTC 1 cut(s) 87
BstMBI GATC 2 cut(s) 73, 172
BstMWI GCNNNNNNNGC 2 cut(s) 32, 44
BstNSI RCATGY 1 cut(s) 281
BstSCI CCNGG 2 cut(s) 69, 168
BstV1I GCAGC 1 cut(s) 47
BstV2I GAAGAC 1 cut(s) 138
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BtrI CACGTC 1 cut(s) 97
BtsCI GGATG 4 cut(s) 106, 291, 306, 339
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 1 cut(s) 21
BveI ACCTGC 1 cut(s) 363
Cfr13I GGNCC 1 cut(s) 166
CpoI CGGWCCG 1 cut(s) 166
CspI CGGWCCG 1 cut(s) 166
CviAII CATG 1 cut(s) 278
CviJI RGCY 4 cut(s) 5, 38, 47, 218
CviKI_1 RGCY 4 cut(s) 5, 38, 47, 218
DpnI GATC 2 cut(s) 75, 174
DpnII GATC 2 cut(s) 73, 172
Eco47I GGWCC 1 cut(s) 166
Eco57I CTGAAG 2 cut(s) 75, 293
Esp3I CGTCTC 1 cut(s) 87
FaeI CATG 1 cut(s) 281
FaiI YATR 3 cut(s) 226, 240, 279
FaqI GGGAC 1 cut(s) 251
FatI CATG 1 cut(s) 277
Fnu4HI GCNGC 1 cut(s) 36
FokI GGATG 4 cut(s) 113, 293, 298, 326
Fsp4HI GCNGC 1 cut(s) 36
GluI GCNGC 1 cut(s) 36
GsaI CCCAGC 1 cut(s) 362
GsuI CTGGAG 1 cut(s) 251
HapII CCGG 2 cut(s) 71, 169
Hin1II CATG 1 cut(s) 281
HinfI GANTC 2 cut(s) 122, 161
HpaII CCGG 2 cut(s) 71, 169
Hpy188I TCNGA 2 cut(s) 177, 273
Hpy188III TCNNGA 4 cut(s) 119, 126, 230, 371
HpyAV CCTTC 2 cut(s) 50, 104
HpyCH4III ACNGT 1 cut(s) 19
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 1 cut(s) 35
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 44
HpySE526I ACGT 1 cut(s) 96
Hsp92II CATG 1 cut(s) 281
Kzo9I GATC 2 cut(s) 73, 172
Lsp1109I GCAGC 1 cut(s) 47
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 2 cut(s) 19, 62
MalI GATC 2 cut(s) 75, 174
MboI GATC 2 cut(s) 73, 172
MboII GAAGA 2 cut(s) 143, 242
MflI RGATCY 1 cut(s) 73
MluCI AATT 1 cut(s) 334
MnlI CCTC 8 cut(s) 49, 83, 226, 279, 316, 321, 324, 353
MroXI GAANNNNTTC 1 cut(s) 114
MspI CCGG 2 cut(s) 71, 169
MspR9I CCNGG 2 cut(s) 71, 170
MwoI GCNNNNNNNGC 2 cut(s) 32, 44
NciI CCSGG 2 cut(s) 71, 170
NdeII GATC 2 cut(s) 73, 172
NlaIII CATG 1 cut(s) 281
NlaIV GGNNCC 1 cut(s) 327
NmuCI GTSAC 1 cut(s) 19
NspI RCATGY 1 cut(s) 281
PdmI GAANNNNTTC 1 cut(s) 114
PfeI GAWTC 2 cut(s) 122, 161
PflFI GACNNNGTC 1 cut(s) 17
PfoI TCCNGGA 1 cut(s) 168
PkrI GCNGC 1 cut(s) 37
PspFI CCCAGC 1 cut(s) 358
PspN4I GGNNCC 1 cut(s) 327
PspPI GGNCC 1 cut(s) 166
PsuI RGATCY 1 cut(s) 73
PsyI GACNNNGTC 1 cut(s) 17
Rsr2I CGGWCCG 1 cut(s) 166
RsrII CGGWCCG 1 cut(s) 166
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 2 cut(s) 73, 172
Sau96I GGNCC 1 cut(s) 166
ScrFI CCNGG 2 cut(s) 71, 170
SetI ASST 5 cut(s) 99, 145, 186, 331, 357
SinI GGWCC 1 cut(s) 166
Sse9I AATT 1 cut(s) 334
SspI AATATT 1 cut(s) 85
StyD4I CCNGG 2 cut(s) 69, 168
TaaI ACNGT 1 cut(s) 19
TaiI ACGT 1 cut(s) 99
TaqI TCGA 1 cut(s) 12
TaqII GACCGA 1 cut(s) 154
TasI AATT 1 cut(s) 334
TfiI GAWTC 2 cut(s) 122, 161
TscAI CASTG 1 cut(s) 28
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 1 cut(s) 35
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 1 cut(s) 328
TspRI CASTG 1 cut(s) 28
Tth111I GACNNNGTC 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 166
XceI RCATGY 1 cut(s) 281
XmnI GAANNNNTTC 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.