Rmu_sc0003323.1_g000026

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003323.1
OG0000169
Physical Location & Seq
Reverse (-)
163425 .. 164192
768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003323.1_g000026.1.cds

Sequence Viewer

Length: 672 bp
atggctttaattgacgccgtcactgccagctttgctgcctctttggagctggctgaacggggaaagattggaagaggtctaatggtggagaaggactttcgcctccaaaaaaaggcagacaacaggttcctgttctcctttgatctggtcagggatcagaacaaggtgcttagaggtggtgtgtggtgctatgattccgctctggtttgtctggaggagtatgatagagtcacccccatcactgacgtccctctgaagcatgtaaggatatgggttagggtttcaggcatccctcctctctacgaggaacctggcaatttcatcctcattggtaacctcctaagaggctatctggactacgatcacagagagtttcacaaaggggttgtgcatatcttcttctctcatgacatctccaaaccggttcttcttgagcgtagggttttcctggctccaggtgttgagcccattctgttgttccagtttgagcaccttaagagtagatgccctcagtgtggtatgattacgcattctagggcgaagtgtgaggattccgttgttctttttgatcctagggttttgaaatttgggggcggaccacctctggtggccttcttgctttctctgctcagaattcccgtgatctacatgtgccttcttcttccctgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

223

Amino Acids

25.4

Weight (kDa)

8.46

Isoelectric Point (pI)

38.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 249
AccBSI CCGCTC 1 cut(s) 200
AciI CCGC 2 cut(s) 198, 594
AclWI GGATC 2 cut(s) 162, 563
AcsI RAATTY 2 cut(s) 584, 633
AcuI CTGAAG 1 cut(s) 275
AcyI GRCGYC 2 cut(s) 15, 246
AfiI CCNNNNNNNGG 2 cut(s) 112, 515
AflII CTTAAG 1 cut(s) 494
AflIII ACRYGT 1 cut(s) 648
AgeI ACCGGT 1 cut(s) 421
AgsI TTSAA 1 cut(s) 583
AjnI CCWGG 3 cut(s) 310, 447, 454
AluBI AGCT 2 cut(s) 30, 49
AluI AGCT 2 cut(s) 30, 49
Alw21I GWGCWC 1 cut(s) 492
AlwI GGATC 2 cut(s) 162, 563
AoxI GGCC 1 cut(s) 609
ApeKI GCWGC 1 cut(s) 35
ApoI RAATTY 2 cut(s) 584, 633
AsiGI ACCGGT 1 cut(s) 421
AspA2I CCTAGG 1 cut(s) 572
AspS9I GGNCC 1 cut(s) 596
AsuHPI GGTGA 1 cut(s) 223
AvaII GGWCC 1 cut(s) 596
AvrII CCTAGG 1 cut(s) 572
BanII GRGCYC 1 cut(s) 468
Bbv12I GWGCWC 1 cut(s) 492
BbvI GCAGC 1 cut(s) 22
BccI CCATC 1 cut(s) 245
BceAI ACGGC 1 cut(s) 2
BciT130I CCWGG 3 cut(s) 312, 449, 456
BfaI CTAG 2 cut(s) 534, 573
BfrI CTTAAG 1 cut(s) 494
BisI GCNGC 1 cut(s) 36
BlnI CCTAGG 1 cut(s) 572
BlsI GCNGC 1 cut(s) 37
Bme1390I CCNGG 3 cut(s) 312, 449, 456
Bme18I GGWCC 1 cut(s) 596
BmgT120I GGNCC 1 cut(s) 596
BmiI GGNNCC 3 cut(s) 128, 309, 453
BmrFI CCNGG 3 cut(s) 312, 449, 456
BmsI GCATC 2 cut(s) 297, 494
BpmI CTGGAG 2 cut(s) 233, 438
BpuEI CTTGAG 1 cut(s) 452
BsaHI GRCGYC 2 cut(s) 15, 246
BsaJI CCNNGG 1 cut(s) 572
BsaWI WCCGGW 1 cut(s) 421
Bsc4I CCNNNNNNNGG 2 cut(s) 112, 515
Bse118I RCCGGY 1 cut(s) 421
Bse1I ACTGG 1 cut(s) 481
BseBI CCWGG 3 cut(s) 312, 449, 456
BseDI CCNNGG 1 cut(s) 572
BseGI GGATG 2 cut(s) 288, 321
BseLI CCNNNNNNNGG 2 cut(s) 112, 515
BseMII CTCAG 2 cut(s) 524, 643
BseNI ACTGG 1 cut(s) 481
BseRI GAGGAG 2 cut(s) 230, 285
BseXI GCAGC 1 cut(s) 22
BshFI GGCC 1 cut(s) 611
BshTI ACCGGT 1 cut(s) 421
BsiHKAI GWGCWC 1 cut(s) 492
BsiSI CCGG 1 cut(s) 422
BslFI GGGAC 1 cut(s) 233
BslI CCNNNNNNNGG 2 cut(s) 112, 515
BsmFI GGGAC 1 cut(s) 233
BsmI GAATGC 1 cut(s) 529
BsnI GGCC 1 cut(s) 611
Bsp1286I GDGCHC 2 cut(s) 468, 492
Bsp143I GATC 5 cut(s) 142, 154, 361, 568, 642
BspACI CCGC 2 cut(s) 198, 594
BspANI GGCC 1 cut(s) 611
BspCNI CTCAG 2 cut(s) 523, 642
BspHI TCATGA 1 cut(s) 406
BspLI GGNNCC 3 cut(s) 128, 309, 453
BspPI GGATC 2 cut(s) 162, 563
BspTI CTTAAG 1 cut(s) 494
BsrBI CCGCTC 1 cut(s) 200
BsrFI RCCGGY 1 cut(s) 421
BsrI ACTGG 1 cut(s) 481
BssAI RCCGGY 1 cut(s) 421
BssECI CCNNGG 1 cut(s) 572
BssMI GATC 5 cut(s) 142, 154, 361, 568, 642
BssNI GRCGYC 2 cut(s) 15, 246
BssT1I CCWWGG 1 cut(s) 572
Bst2UI CCWGG 3 cut(s) 312, 449, 456
Bst6I CTCTTC 1 cut(s) 67
BstACI GRCGYC 2 cut(s) 15, 246
BstAFI CTTAAG 1 cut(s) 494
BstC8I GCNNGC 2 cut(s) 28, 51
BstDEI CTNAG 4 cut(s) 170, 341, 510, 629
BstEII GGTNACC 1 cut(s) 332
BstF5I GGATG 2 cut(s) 288, 321
BstKTI GATC 5 cut(s) 145, 157, 364, 571, 645
BstMBI GATC 5 cut(s) 142, 154, 361, 568, 642
BstMWI GCNNNNNNNGC 3 cut(s) 23, 32, 625
BstNI CCWGG 3 cut(s) 312, 449, 456
BstNSI RCATGY 2 cut(s) 263, 652
BstPI GGTNACC 1 cut(s) 332
BstSCI CCNGG 3 cut(s) 310, 447, 454
BstV1I GCAGC 1 cut(s) 22
BsuRI GGCC 1 cut(s) 611
BtsCI GGATG 2 cut(s) 288, 321
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 3 cut(s) 21, 240, 518
Cac8I GCNNGC 2 cut(s) 28, 51
CciI TCATGA 1 cut(s) 406
Cfr10I RCCGGY 1 cut(s) 421
Cfr13I GGNCC 1 cut(s) 596
CseI GACGC 1 cut(s) 23
CspAI ACCGGT 1 cut(s) 421
CviAII CATG 3 cut(s) 260, 407, 649
CviJI RGCY 8 cut(s) 5, 30, 49, 53, 348, 452, 466, 611
CviKI_1 RGCY 8 cut(s) 5, 30, 49, 53, 348, 452, 466, 611
DdeI CTNAG 4 cut(s) 170, 341, 510, 629
DpnI GATC 5 cut(s) 144, 156, 363, 570, 644
DpnII GATC 5 cut(s) 142, 154, 361, 568, 642
Eam1104I CTCTTC 1 cut(s) 67
EarI CTCTTC 1 cut(s) 67
EciI GGCGGA 1 cut(s) 609
Eco130I CCWWGG 1 cut(s) 572
Eco24I GRGCYC 1 cut(s) 468
Eco47I GGWCC 1 cut(s) 596
Eco57I CTGAAG 1 cut(s) 275
Eco91I GGTNACC 1 cut(s) 332
EcoO65I GGTNACC 1 cut(s) 332
EcoRI GAATTC 1 cut(s) 633
EcoRII CCWGG 3 cut(s) 310, 447, 454
EcoT14I CCWWGG 1 cut(s) 572
EcoT38I GRGCYC 1 cut(s) 468
ErhI CCWWGG 1 cut(s) 572
FaeI CATG 3 cut(s) 263, 410, 652
FaiI YATR 8 cut(s) 192, 222, 261, 271, 393, 408, 521, 650
FaqI GGGAC 1 cut(s) 233
FatI CATG 3 cut(s) 259, 406, 648
Fnu4HI GCNGC 1 cut(s) 36
FokI GGATG 2 cut(s) 275, 308
FriOI GRGCYC 1 cut(s) 468
Fsp4HI GCNGC 1 cut(s) 36
FspBI CTAG 2 cut(s) 534, 573
GluI GCNGC 1 cut(s) 36
GsuI CTGGAG 2 cut(s) 233, 438
HaeIII GGCC 1 cut(s) 611
HapII CCGG 1 cut(s) 422
HgaI GACGC 1 cut(s) 23
Hin1I GRCGYC 2 cut(s) 15, 246
Hin1II CATG 3 cut(s) 263, 410, 652
HinfI GANTC 3 cut(s) 194, 228, 551
HpaII CCGG 1 cut(s) 422
HphI GGTGA 1 cut(s) 223
Hpy188I TCNGA 3 cut(s) 159, 255, 632
Hpy188III TCNNGA 4 cut(s) 212, 353, 407, 431
HpyAV CCTTC 3 cut(s) 85, 622, 665
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 1 cut(s) 391
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 32, 625
HpyF3I CTNAG 4 cut(s) 170, 341, 510, 629
HpySE526I ACGT 1 cut(s) 246
Hsp92I GRCGYC 2 cut(s) 15, 246
Hsp92II CATG 3 cut(s) 263, 410, 652
Kzo9I GATC 5 cut(s) 142, 154, 361, 568, 642
LmnI GCTCC 2 cut(s) 46, 457
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 2 cut(s) 297, 494
MaeI CTAG 2 cut(s) 534, 573
MaeII ACGT 1 cut(s) 246
MaeIII GTNAC 3 cut(s) 19, 229, 332
MalI GATC 5 cut(s) 144, 156, 363, 570, 644
MbiI CCGCTC 1 cut(s) 200
MboI GATC 5 cut(s) 142, 154, 361, 568, 642
MboII GAAGA 6 cut(s) 84, 388, 391, 419, 650, 653
MhlI GDGCHC 2 cut(s) 468, 492
MluCI AATT 4 cut(s) 9, 316, 584, 633
MlyI GAGTC 1 cut(s) 237
MseI TTAA 2 cut(s) 8, 495
MspCI CTTAAG 1 cut(s) 494
MspI CCGG 1 cut(s) 422
MspR9I CCNGG 3 cut(s) 312, 449, 456
Mva1269I GAATGC 1 cut(s) 529
MvaI CCWGG 3 cut(s) 312, 449, 456
MwoI GCNNNNNNNGC 3 cut(s) 23, 32, 625
NdeII GATC 5 cut(s) 142, 154, 361, 568, 642
NlaIII CATG 3 cut(s) 263, 410, 652
NlaIV GGNNCC 3 cut(s) 128, 309, 453
NmuCI GTSAC 2 cut(s) 19, 229
NspI RCATGY 2 cut(s) 263, 652
PagI TCATGA 1 cut(s) 406
PciI ACATGT 1 cut(s) 648
PctI GAATGC 1 cut(s) 529
PfeI GAWTC 2 cut(s) 194, 551
PflFI GACNNNGTC 1 cut(s) 17
PinAI ACCGGT 1 cut(s) 421
PkrI GCNGC 1 cut(s) 37
PleI GAGTC 1 cut(s) 236
PpsI GAGTC 1 cut(s) 236
PscI ACATGT 1 cut(s) 648
Psp6I CCWGG 3 cut(s) 310, 447, 454
PspEI GGTNACC 1 cut(s) 332
PspGI CCWGG 3 cut(s) 310, 447, 454
PspN4I GGNNCC 3 cut(s) 128, 309, 453
PspPI GGNCC 1 cut(s) 596
PsyI GACNNNGTC 1 cut(s) 17
SaqAI TTAA 2 cut(s) 8, 495
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 5 cut(s) 142, 154, 361, 568, 642
Sau96I GGNCC 1 cut(s) 596
SchI GAGTC 1 cut(s) 237
ScrFI CCNGG 3 cut(s) 312, 449, 456
SduI GDGCHC 2 cut(s) 468, 492
SfaNI GCATC 2 cut(s) 297, 494
SinI GGWCC 1 cut(s) 596
SmlI CTYRAG 2 cut(s) 431, 494
SmoI CTYRAG 2 cut(s) 431, 494
Sse9I AATT 4 cut(s) 9, 316, 584, 633
SsiI CCGC 2 cut(s) 198, 594
SspMI CTAG 2 cut(s) 534, 573
StyD4I CCNGG 3 cut(s) 310, 447, 454
StyI CCWWGG 1 cut(s) 572
TaiI ACGT 1 cut(s) 249
TasI AATT 4 cut(s) 9, 316, 584, 633
TfiI GAWTC 2 cut(s) 194, 551
Tru1I TTAA 2 cut(s) 8, 495
Tru9I TTAA 2 cut(s) 8, 495
TscAI CASTG 3 cut(s) 28, 247, 518
TseFI GTSAC 2 cut(s) 19, 229
TseI GCWGC 1 cut(s) 35
Tsp45I GTSAC 2 cut(s) 19, 229
TspDTI ATGAA 1 cut(s) 310
TspGWI ACGGA 1 cut(s) 544
TspRI CASTG 3 cut(s) 28, 247, 518
Tth111I GACNNNGTC 1 cut(s) 17
Vha464I CTTAAG 1 cut(s) 494
VpaK11BI GGWCC 1 cut(s) 596
XapI RAATTY 2 cut(s) 584, 633
XceI RCATGY 2 cut(s) 263, 652
XmaJI CCTAGG 1 cut(s) 572
XspI CTAG 2 cut(s) 534, 573
ZraI GACGTC 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.