RchiOBHm_Chr6g0288921

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000169
Physical Location & Seq
Forward (+)
52049621 .. 52050157
537 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25920

Sequence Viewer

Length: 537 bp
ATGCCTTCTTCTTCACTGCTGAAAAAGAAGAAGCCAGTTATTCGTCGGCTAGAGCTAGAGCGATCATCTTCTGAAATGGCTTCACAGGATACCGTGCACATCACGGCGGAGATGGAAGGTATGGCTCAAGAGGTTTCGGAGTCGAACAAGGTTAGTGGGTTGTCCTCGATGGAACCTTCTGACCCAAGTTCTCAAGATCTAGATATTACTCCTGCCATGCAGACTGGTCAGAAGCAAACCTTGACTTACAAGAAAAGAGGTCGAGAAGAGGTAATTGTTCCTTCCCCTAAGAAATTCAAAACTATTTTGGGTGGTAAGCTTCTCACTCTCCATGCGGAAGTTCTTGGTTTGGCTGAAGTTGAGGATGATGTCGCCCTGGTGACATTGAAGAAGAGGTCGGGAAGACCGTTGGGAAGCAAGAACAAGGGTCCCAGGTCTCAAAAGAAGGTTGGTTTGACCCCTTTGCGTCTTATCTATCCTTCTACTACTACTGCTCAGGAGGTTGGCCCTAAAGCTAAGGGCAAGGGGAAACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

178

Amino Acids

19.32

Weight (kDa)

9.85

Isoelectric Point (pI)

60.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000169)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13681 FvH4_3g25832 FvH4_3g26062 FvH4_4g08041 FvH4_4g13361 FvH4_4g16721 FvH4_4g21881 FvH4_6g07632 FvH4_6g17062 FvH4_6g26370 FvH4_7g07641
rosa_chinensis RchiOBHm_Chr1g0320861 RchiOBHm_Chr2g0109251 RchiOBHm_Chr3g0472781 RchiOBHm_Chr6g0288921 RchiOBHm_Chr7g0191711 RchiOBHm_Chr7g0238801
rosa_laevigata RLG00000007550 RLG00000036731
rosa_multiflora Rmu_co8018808.1_g000001 Rmu_co8401665.1_g000001 Rmu_co8461051.1_g000001 Rmu_sc0000144.1_g000042 Rmu_sc0000144.1_g000051 Rmu_sc0000160.1_g000018 Rmu_sc0000245.1_g000011 Rmu_sc0000299.1_g000021 Rmu_sc0000348.1_g000003 Rmu_sc0000367.1_g000120 Rmu_sc0000424.1_g000037 Rmu_sc0000427.1_g000006 Rmu_sc0000427.1_g000023 Rmu_sc0000427.1_g000037 Rmu_sc0000604.1_g000005 Rmu_sc0000605.1_g000060 Rmu_sc0000621.1_g000030 Rmu_sc0000693.1_g000017 Rmu_sc0000708.1_g000012 Rmu_sc0000918.1_g000031 Rmu_sc0000953.1_g000027 Rmu_sc0001030.1_g000008 Rmu_sc0001030.1_g000011 Rmu_sc0001051.1_g000026 Rmu_sc0001055.1_g000001 Rmu_sc0001081.1_g000001 Rmu_sc0001175.1_g000002 Rmu_sc0001176.1_g000026 Rmu_sc0001181.1_g000010 Rmu_sc0001225.1_g000003 Rmu_sc0001371.1_g000008 Rmu_sc0001433.1_g000012 Rmu_sc0001507.1_g000009 Rmu_sc0001643.1_g000014 Rmu_sc0001879.1_g000002 Rmu_sc0001890.1_g000006 Rmu_sc0002129.1_g000039 Rmu_sc0002356.1_g000008 Rmu_sc0002358.1_g000003 Rmu_sc0002553.1_g000024 Rmu_sc0002826.1_g000007 Rmu_sc0002872.1_g000007 Rmu_sc0003323.1_g000026 Rmu_sc0003410.1_g000001 Rmu_sc0003511.1_g000042 Rmu_sc0003541.1_g000036 Rmu_sc0003605.1_g000048 Rmu_sc0003689.1_g000014 Rmu_sc0003692.1_g000010 Rmu_sc0003720.1_g000001 Rmu_sc0003813.1_g000003 Rmu_sc0003872.1_g000005 Rmu_sc0004010.1_g000012 Rmu_sc0004165.1_g000092 Rmu_sc0004230.1_g000013 Rmu_sc0004318.1_g000020 Rmu_sc0004353.1_g000004 Rmu_sc0004617.1_g000005 Rmu_sc0004617.1_g000006 Rmu_sc0004658.1_g000005 Rmu_sc0005356.1_g000008 Rmu_sc0005994.1_g000014 Rmu_sc0006388.1_g000004 Rmu_sc0006674.1_g000020 Rmu_sc0006898.1_g000008 Rmu_sc0007286.1_g000005 Rmu_sc0007476.1_g000002 Rmu_sc0007671.1_g000005 Rmu_sc0007991.1_g000008 Rmu_sc0008131.1_g000008 Rmu_sc0008163.1_g000011 Rmu_sc0008322.1_g000004 Rmu_sc0008334.1_g000017 Rmu_sc0008835.1_g000009 Rmu_sc0008835.1_g000011 Rmu_sc0009954.1_g000006 Rmu_sc0010050.1_g000001 Rmu_sc0010317.1_g000011 Rmu_sc0010426.1_g000002 Rmu_sc0011111.1_g000005 Rmu_sc0014614.1_g000003 Rmu_sc0014688.1_g000002 Rmu_sc0015167.1_g000003 Rmu_sc0015936.1_g000003 Rmu_sc0017323.1_g000003 Rmu_sc0018541.1_g000001 Rmu_sc0019370.1_g000003 Rmu_sc0020444.1_g000001 Rmu_sc0020600.1_g000003 Rmu_sc0021238.1_g000001 Rmu_sc0022909.1_g000001 Rmu_sc0030397.1_g000001 Rmu_sc0030484.1_g000002 Rmu_sc0035139.1_g000001 Rmu_sc0035719.1_g000001 Rmu_ssc0000287.1_g000010 Rmu_ssc0000451.1_g000005
rosa_roxburghii Rroxscaffold_1G00046590 Rroxscaffold_1G00050100 Rroxscaffold_2G00079390 Rroxscaffold_2G00088790 Rroxscaffold_2G00097170 Rroxscaffold_2G00126350 Rroxscaffold_3G00221550 Rroxscaffold_3G00222700 Rroxscaffold_3G00236390 Rroxscaffold_3G00254000 Rroxscaffold_3G00260090 Rroxscaffold_3G00263600 Rroxscaffold_5G00336900
rosa_rugosa Rorug01G0048200 Rorug01G0172000 Rorug01G0294000 Rorug01G0308200 Rorug01G0355300 Rorug02G0000900 Rorug02G0129600 Rorug02G0136800 Rorug02G0179700 Rorug02G0251500 Rorug02G0305800 Rorug02G0305900 Rorug02G0373800 Rorug02G0396100 Rorug02G0411300 Rorug02G0411400 Rorug02G0411500 Rorug02G0460200 Rorug03G0187400 Rorug03G0299000 Rorug04G0041700 Rorug04G0130800 Rorug04G0168300 Rorug04G0198700 Rorug05G0095100 Rorug05G0194100 Rorug05G0205300 Rorug05G0235300 Rorug06G0088100.1 Rorug06G0120100 Rorug06G0164300 Rorug07G0163600 Rorug07G0163700 Rorug07G0236200 Rorug07G0307200 RorugPtG0006100
rosa_samantha Rh1DG036900 Rh3BG176200 Rh4CG455100 Rh6AG142400 Rh6AG263000 Rh6CG138900 Rh6DG126200 Rh7CG393300 Rh7CG447500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 107, 335
AcsI RAATTY 1 cut(s) 293
AcuI CTGAAG 1 cut(s) 375
AgsI TTSAA 2 cut(s) 298, 388
AjnI CCWGG 2 cut(s) 375, 431
AluBI AGCT 3 cut(s) 55, 319, 515
AluI AGCT 3 cut(s) 55, 319, 515
Alw21I GWGCWC 1 cut(s) 99
Alw26I GTCTC 1 cut(s) 441
Alw44I GTGCAC 1 cut(s) 95
AoxI GGCC 1 cut(s) 505
ApaLI GTGCAC 1 cut(s) 95
ApoI RAATTY 1 cut(s) 293
AspS9I GGNCC 2 cut(s) 428, 506
AsuHPI GGTGA 1 cut(s) 391
AvaII GGWCC 1 cut(s) 428
BaeGI GKGCMC 1 cut(s) 99
BbsI GAAGAC 1 cut(s) 409
Bbv12I GWGCWC 1 cut(s) 99
BccI CCATC 2 cut(s) 106, 163
BceAI ACGGC 1 cut(s) 120
BciT130I CCWGG 2 cut(s) 377, 433
BciVI GTATCC 1 cut(s) 82
BcoDI GTCTC 1 cut(s) 441
BfaI CTAG 4 cut(s) 50, 56, 200, 535
BfuI GTATCC 1 cut(s) 82
BglII AGATCT 1 cut(s) 196
Bme1390I CCNGG 2 cut(s) 377, 433
Bme18I GGWCC 1 cut(s) 428
BmgT120I GGNCC 2 cut(s) 428, 506
BmiI GGNNCC 3 cut(s) 174, 429, 430
BmrFI CCNGG 2 cut(s) 377, 433
BpiI GAAGAC 1 cut(s) 409
Bpu10I CCTNAGC 2 cut(s) 495, 516
BpuEI CTTGAG 2 cut(s) 111, 177
BsaI GGTCTC 1 cut(s) 441
BsaJI CCNNGG 2 cut(s) 375, 431
Bse1I ACTGG 2 cut(s) 35, 229
BseBI CCWGG 2 cut(s) 377, 433
BseDI CCNNGG 2 cut(s) 375, 431
BseGI GGATG 1 cut(s) 370
BseMII CTCAG 1 cut(s) 509
BseNI ACTGG 2 cut(s) 35, 229
BseSI GKGCMC 1 cut(s) 99
BshFI GGCC 1 cut(s) 507
BsiHKAI GWGCWC 1 cut(s) 99
BslFI GGGAC 1 cut(s) 414
BsmAI GTCTC 1 cut(s) 441
BsmFI GGGAC 1 cut(s) 414
BsnI GGCC 1 cut(s) 507
Bso31I GGTCTC 1 cut(s) 441
Bsp1286I GDGCHC 1 cut(s) 99
Bsp143I GATC 2 cut(s) 62, 196
BspACI CCGC 2 cut(s) 107, 335
BspANI GGCC 1 cut(s) 507
BspCNI CTCAG 1 cut(s) 508
BspLI GGNNCC 3 cut(s) 174, 429, 430
BspTNI GGTCTC 1 cut(s) 441
BsrI ACTGG 2 cut(s) 35, 229
BssECI CCNNGG 2 cut(s) 375, 431
BssMI GATC 2 cut(s) 62, 196
Bst2UI CCWGG 2 cut(s) 377, 433
Bst4CI ACNGT 2 cut(s) 94, 408
Bst6I CTCTTC 2 cut(s) 261, 386
BstDEI CTNAG 3 cut(s) 288, 495, 516
BstF5I GGATG 1 cut(s) 370
BstKTI GATC 2 cut(s) 65, 199
BstMAI GTCTC 1 cut(s) 441
BstMBI GATC 2 cut(s) 62, 196
BstNI CCWGG 2 cut(s) 377, 433
BstSCI CCNGG 2 cut(s) 375, 431
BstSLI GKGCMC 1 cut(s) 99
BstV2I GAAGAC 1 cut(s) 409
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BsuI GTATCC 1 cut(s) 82
BsuRI GGCC 1 cut(s) 507
BtsCI GGATG 1 cut(s) 370
BtsI GCAGTG 1 cut(s) 14
BtsIMutI CAGTG 1 cut(s) 14
Cfr13I GGNCC 2 cut(s) 428, 506
CseI GACGC 1 cut(s) 455
CspCI CAANNNNNGTGG 2 cut(s) 136, 171
CviAII CATG 2 cut(s) 217, 332
CviJI RGCY 9 cut(s) 34, 49, 55, 80, 125, 319, 353, 507, 515
CviKI_1 RGCY 9 cut(s) 34, 49, 55, 80, 125, 319, 353, 507, 515
DdeI CTNAG 3 cut(s) 288, 495, 516
DpnI GATC 2 cut(s) 64, 198
DpnII GATC 2 cut(s) 62, 196
Eam1104I CTCTTC 2 cut(s) 261, 386
EarI CTCTTC 2 cut(s) 261, 386
EciI GGCGGA 1 cut(s) 122
Eco31I GGTCTC 1 cut(s) 441
Eco47I GGWCC 1 cut(s) 428
Eco57I CTGAAG 1 cut(s) 375
EcoO109I RGGNCCY 1 cut(s) 428
EcoRII CCWGG 2 cut(s) 375, 431
FaeI CATG 2 cut(s) 220, 335
FaiI YATR 3 cut(s) 122, 218, 333
FalI AAGNNNNNCTT 2 cut(s) 224, 256
FaqI GGGAC 1 cut(s) 414
FatI CATG 2 cut(s) 216, 331
FokI GGATG 1 cut(s) 377
FspBI CTAG 4 cut(s) 50, 56, 200, 535
HaeIII GGCC 1 cut(s) 507
HgaI GACGC 1 cut(s) 455
Hin1II CATG 2 cut(s) 220, 335
HindIII AAGCTT 1 cut(s) 317
HinfI GANTC 1 cut(s) 140
HphI GGTGA 1 cut(s) 391
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 4 cut(s) 73, 139, 181, 231
Hpy188III TCNNGA 6 cut(s) 128, 194, 200, 263, 399, 497
Hpy8I GTNNAC 1 cut(s) 97
Hpy99I CGWCG 1 cut(s) 48
HpyAV CCTTC 6 cut(s) 15, 110, 186, 291, 439, 489
HpyCH4III ACNGT 2 cut(s) 94, 408
HpyCH4V TGCA 2 cut(s) 97, 220
HpyF3I CTNAG 3 cut(s) 288, 495, 516
Hsp92II CATG 2 cut(s) 220, 335
KflI GGGWCCC 1 cut(s) 428
Kzo9I GATC 2 cut(s) 62, 196
LpnPI CCDG 9 cut(s) 48, 71, 210, 225, 362, 389, 418, 445, 482
MaeI CTAG 4 cut(s) 50, 56, 200, 535
MaeIII GTNAC 1 cut(s) 379
MalI GATC 2 cut(s) 64, 198
MboI GATC 2 cut(s) 62, 196
MboII GAAGA 7 cut(s) 3, 40, 60, 278, 400, 403, 414
MflI RGATCY 1 cut(s) 196
MhlI GDGCHC 1 cut(s) 99
MluCI AATT 2 cut(s) 273, 293
MlyI GAGTC 1 cut(s) 149
MnlI CCTC 7 cut(s) 124, 175, 251, 262, 355, 387, 493
MspR9I CCNGG 2 cut(s) 377, 433
MvaI CCWGG 2 cut(s) 377, 433
NdeII GATC 2 cut(s) 62, 196
NlaIII CATG 2 cut(s) 220, 335
NlaIV GGNNCC 3 cut(s) 174, 429, 430
NmuCI GTSAC 1 cut(s) 379
PcsI WCGNNNNNNNCGW 1 cut(s) 404
PleI GAGTC 1 cut(s) 148
PpsI GAGTC 1 cut(s) 148
PpuMI RGGWCCY 1 cut(s) 428
Psp5II RGGWCCY 1 cut(s) 428
Psp6I CCWGG 2 cut(s) 375, 431
PspGI CCWGG 2 cut(s) 375, 431
PspN4I GGNNCC 3 cut(s) 174, 429, 430
PspPI GGNCC 2 cut(s) 428, 506
PspPPI RGGWCCY 1 cut(s) 428
PsuI RGATCY 1 cut(s) 196
Sau3AI GATC 2 cut(s) 62, 196
Sau96I GGNCC 2 cut(s) 428, 506
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 2 cut(s) 377, 433
SduI GDGCHC 1 cut(s) 99
SinI GGWCC 1 cut(s) 428
SmlI CTYRAG 2 cut(s) 126, 192
SmoI CTYRAG 2 cut(s) 126, 192
Sse9I AATT 2 cut(s) 273, 293
SsiI CCGC 2 cut(s) 107, 335
SspMI CTAG 4 cut(s) 50, 56, 200, 535
StyD4I CCNGG 2 cut(s) 375, 431
TaaI ACNGT 2 cut(s) 94, 408
TaqI TCGA 3 cut(s) 143, 167, 262
TasI AATT 2 cut(s) 273, 293
TscAI CASTG 1 cut(s) 21
TseFI GTSAC 1 cut(s) 379
Tsp45I GTSAC 1 cut(s) 379
TspRI CASTG 1 cut(s) 21
VneI GTGCAC 1 cut(s) 95
VpaK11BI GGWCC 1 cut(s) 428
XapI RAATTY 1 cut(s) 293
XbaI TCTAGA 1 cut(s) 199
XspI CTAG 4 cut(s) 50, 56, 200, 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.