pre-mRNA-processing-splicing factor
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| HLH | PF00010 | 251 - 298 | 1.6e-12 | Helix-loop-helix DNA-binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1103 |
| AatII | GACGTC | 1 cut(s) | 1113 |
| Acc36I | ACCTGC | 1 cut(s) | 360 |
| AccB1I | GGYRCC | 1 cut(s) | 227 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 297 |
| AccI | GTMKAC | 1 cut(s) | 1107 |
| AccIII | TCCGGA | 1 cut(s) | 1113 |
| AciI | CCGC | 6 cut(s) | 183, 494, 545, 551, 557, 560 |
| AclWI | GGATC | 2 cut(s) | 35, 1124 |
| AcsI | RAATTY | 1 cut(s) | 1243 |
| AcuI | CTGAAG | 1 cut(s) | 191 |
| AcyI | GRCGYC | 1 cut(s) | 1110 |
| AfaI | GTAC | 3 cut(s) | 5, 49, 599 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 262, 297, 621 |
| AgsI | TTSAA | 3 cut(s) | 1082, 1211, 1264 |
| AhlI | ACTAGT | 1 cut(s) | 14 |
| Alw21I | GWGCWC | 4 cut(s) | 162, 393, 891, 1073 |
| Alw26I | GTCTC | 4 cut(s) | 470, 984, 1065, 1319 |
| AlwI | GGATC | 2 cut(s) | 35, 1124 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 586 |
| Ama87I | CYCGRG | 2 cut(s) | 445, 473 |
| Aor13HI | TCCGGA | 1 cut(s) | 1113 |
| AoxI | GGCC | 2 cut(s) | 337, 495 |
| ApoI | RAATTY | 1 cut(s) | 1243 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 822 |
| AspLEI | GCGC | 1 cut(s) | 774 |
| AspS9I | GGNCC | 5 cut(s) | 235, 338, 612, 750, 1147 |
| AsuC2I | CCSGG | 3 cut(s) | 432, 446, 447 |
| AsuHPI | GGTGA | 2 cut(s) | 1037, 1126 |
| AvaI | CYCGRG | 2 cut(s) | 445, 473 |
| AvaII | GGWCC | 4 cut(s) | 235, 612, 750, 1147 |
| BanI | GGYRCC | 1 cut(s) | 227 |
| BanII | GRGCYC | 3 cut(s) | 162, 891, 1073 |
| BbsI | GAAGAC | 1 cut(s) | 1278 |
| Bbv12I | GWGCWC | 4 cut(s) | 162, 393, 891, 1073 |
| BccI | CCATC | 4 cut(s) | 211, 426, 656, 1145 |
| BclI | TGATCA | 1 cut(s) | 1033 |
| BcnI | CCSGG | 3 cut(s) | 432, 446, 447 |
| BcoDI | GTCTC | 4 cut(s) | 470, 984, 1065, 1319 |
| BcuI | ACTAGT | 1 cut(s) | 14 |
| BfaI | CTAG | 1 cut(s) | 15 |
| BfmI | CTRYAG | 3 cut(s) | 21, 578, 855 |
| BfoI | RGCGCY | 1 cut(s) | 775 |
| BfuAI | ACCTGC | 1 cut(s) | 360 |
| BlpI | GCTNAGC | 1 cut(s) | 356 |
| BmcAI | AGTACT | 1 cut(s) | 49 |
| Bme1390I | CCNGG | 3 cut(s) | 432, 446, 447 |
| Bme18I | GGWCC | 4 cut(s) | 235, 612, 750, 1147 |
| BmeT110I | CYCGRG | 2 cut(s) | 445, 473 |
| BmgT120I | GGNCC | 5 cut(s) | 235, 338, 612, 750, 1147 |
| BmiI | GGNNCC | 4 cut(s) | 229, 613, 751, 825 |
| BmrFI | CCNGG | 3 cut(s) | 432, 446, 447 |
| BmrI | ACTGGG | 2 cut(s) | 39, 307 |
| BmsI | GCATC | 2 cut(s) | 856, 860 |
| BmuI | ACTGGG | 2 cut(s) | 39, 307 |
| BpiI | GAAGAC | 1 cut(s) | 1278 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 774, 806 |
| BpmI | CTGGAG | 2 cut(s) | 716, 1008 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 356 |
| BpuEI | CTTGAG | 2 cut(s) | 154, 875 |
| BpuMI | CCSGG | 3 cut(s) | 432, 446, 447 |
| BsaAI | YACGTR | 1 cut(s) | 7 |
| BsaHI | GRCGYC | 1 cut(s) | 1110 |
| BsaI | GGTCTC | 1 cut(s) | 1065 |
| BsaJI | CCNNGG | 7 cut(s) | 147, 186, 231, 430, 445, 446, 1101 |
| BsaWI | WCCGGW | 1 cut(s) | 1113 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 359, 389 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 262, 297, 621 |
| Bse1I | ACTGG | 3 cut(s) | 45, 302, 1149 |
| Bse3DI | GCAATG | 2 cut(s) | 646, 1305 |
| BseAI | TCCGGA | 1 cut(s) | 1113 |
| BseDI | CCNNGG | 7 cut(s) | 147, 186, 231, 430, 445, 446, 1101 |
| BseGI | GGATG | 2 cut(s) | 418, 655 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 262, 297, 621 |
| BseMI | GCAATG | 2 cut(s) | 646, 1305 |
| BseMII | CTCAG | 4 cut(s) | 370, 759, 960, 1055 |
| BseNI | ACTGG | 3 cut(s) | 45, 302, 1149 |
| BseRI | GAGGAG | 7 cut(s) | 151, 367, 370, 391, 793, 964, 1081 |
| BseYI | CCCAGC | 1 cut(s) | 1226 |
| BshFI | GGCC | 2 cut(s) | 339, 497 |
| BshNI | GGYRCC | 1 cut(s) | 227 |
| BsiHKAI | GWGCWC | 4 cut(s) | 162, 393, 891, 1073 |
| BsiHKCI | CYCGRG | 2 cut(s) | 445, 473 |
| BsiSI | CCGG | 3 cut(s) | 432, 446, 1114 |
| BslFI | GGGAC | 4 cut(s) | 314, 568, 763, 1245 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 262, 297, 621 |
| BsmAI | GTCTC | 4 cut(s) | 470, 984, 1065, 1319 |
| BsmBI | CGTCTC | 1 cut(s) | 984 |
| BsmFI | GGGAC | 4 cut(s) | 314, 568, 763, 1245 |
| BsnI | GGCC | 2 cut(s) | 339, 497 |
| Bso31I | GGTCTC | 1 cut(s) | 1065 |
| BsoBI | CYCGRG | 2 cut(s) | 445, 473 |
| Bsp1286I | GDGCHC | 4 cut(s) | 162, 393, 891, 1073 |
| Bsp13I | TCCGGA | 1 cut(s) | 1113 |
| Bsp143I | GATC | 5 cut(s) | 40, 844, 1033, 1116, 1161 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 356 |
| Bsp19I | CCATGG | 3 cut(s) | 147, 186, 231 |
| BspACI | CCGC | 6 cut(s) | 183, 494, 545, 551, 557, 560 |
| BspANI | GGCC | 2 cut(s) | 339, 497 |
| BspCNI | CTCAG | 4 cut(s) | 369, 760, 961, 1056 |
| BspEI | TCCGGA | 1 cut(s) | 1113 |
| BspHI | TCATGA | 2 cut(s) | 121, 1036 |
| BspLI | GGNNCC | 4 cut(s) | 229, 613, 751, 825 |
| BspMAI | CTGCAG | 2 cut(s) | 25, 582 |
| BspMI | ACCTGC | 1 cut(s) | 360 |
| BspPI | GGATC | 2 cut(s) | 35, 1124 |
| BspQI | GCTCTTC | 1 cut(s) | 150 |
| BspT107I | GGYRCC | 1 cut(s) | 227 |
| BspTNI | GGTCTC | 1 cut(s) | 1065 |
| BsrDI | GCAATG | 2 cut(s) | 646, 1305 |
| BsrI | ACTGG | 3 cut(s) | 45, 302, 1149 |
| BssECI | CCNNGG | 7 cut(s) | 147, 186, 231, 430, 445, 446, 1101 |
| BssMI | GATC | 5 cut(s) | 40, 844, 1033, 1116, 1161 |
| BssNI | GRCGYC | 1 cut(s) | 1110 |
| BssT1I | CCWWGG | 3 cut(s) | 147, 186, 231 |
| Bst4CI | ACNGT | 1 cut(s) | 901 |
| Bst6I | CTCTTC | 5 cut(s) | 150, 388, 505, 721, 727 |
| BstACI | GRCGYC | 1 cut(s) | 1110 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 586 |
| BstBAI | YACGTR | 1 cut(s) | 7 |
| BstC8I | GCNNGC | 1 cut(s) | 31 |
| BstDEI | CTNAG | 5 cut(s) | 356, 705, 768, 969, 1064 |
| BstDSI | CCRYGG | 3 cut(s) | 147, 186, 231 |
| BstEII | GGTNACC | 1 cut(s) | 1025 |
| BstF5I | GGATG | 2 cut(s) | 418, 655 |
| BstH2I | RGCGCY | 1 cut(s) | 775 |
| BstHHI | GCGC | 1 cut(s) | 774 |
| BstKTI | GATC | 5 cut(s) | 43, 847, 1036, 1119, 1164 |
| BstMAI | GTCTC | 4 cut(s) | 470, 984, 1065, 1319 |
| BstMBI | GATC | 5 cut(s) | 40, 844, 1033, 1116, 1161 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 26, 544, 547, 553, 556, 559, 586, 636, 916 |
| BstPI | GGTNACC | 1 cut(s) | 1025 |
| BstSCI | CCNGG | 3 cut(s) | 430, 444, 445 |
| BstSFI | CTRYAG | 3 cut(s) | 21, 578, 855 |
| BstV2I | GAAGAC | 1 cut(s) | 1278 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1144 |
| BsuRI | GGCC | 2 cut(s) | 339, 497 |
| BtgI | CCRYGG | 3 cut(s) | 147, 186, 231 |
| BtsCI | GGATG | 2 cut(s) | 418, 655 |
| BveI | ACCTGC | 1 cut(s) | 360 |
| Cac8I | GCNNGC | 1 cut(s) | 31 |
| CaiI | CAGNNNCTG | 1 cut(s) | 586 |
| CciI | TCATGA | 2 cut(s) | 121, 1036 |
| CfoI | GCGC | 1 cut(s) | 774 |
| Cfr13I | GGNCC | 5 cut(s) | 235, 338, 612, 750, 1147 |
| Cfr9I | CCCGGG | 1 cut(s) | 445 |
| Csp6I | GTAC | 3 cut(s) | 4, 48, 598 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 97, 132, 589, 624 |
| CviQI | GTAC | 3 cut(s) | 4, 48, 598 |
| DdeI | CTNAG | 5 cut(s) | 356, 705, 768, 969, 1064 |
| DpnI | GATC | 5 cut(s) | 42, 846, 1035, 1118, 1163 |
| DpnII | GATC | 5 cut(s) | 40, 844, 1033, 1116, 1161 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1103 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1103 |
| Eam1104I | CTCTTC | 5 cut(s) | 150, 388, 505, 721, 727 |
| EarI | CTCTTC | 5 cut(s) | 150, 388, 505, 721, 727 |
| Ecl136II | GAGCTC | 3 cut(s) | 160, 889, 1071 |
| Eco130I | CCWWGG | 3 cut(s) | 147, 186, 231 |
| Eco24I | GRGCYC | 3 cut(s) | 162, 891, 1073 |
| Eco31I | GGTCTC | 1 cut(s) | 1065 |
| Eco47I | GGWCC | 4 cut(s) | 235, 612, 750, 1147 |
| Eco53kI | GAGCTC | 3 cut(s) | 160, 889, 1071 |
| Eco57I | CTGAAG | 1 cut(s) | 191 |
| Eco88I | CYCGRG | 2 cut(s) | 445, 473 |
| Eco91I | GGTNACC | 1 cut(s) | 1025 |
| EcoICRI | GAGCTC | 3 cut(s) | 160, 889, 1071 |
| EcoO65I | GGTNACC | 1 cut(s) | 1025 |
| EcoRI | GAATTC | 1 cut(s) | 1243 |
| EcoT14I | CCWWGG | 3 cut(s) | 147, 186, 231 |
| EcoT38I | GRGCYC | 3 cut(s) | 162, 891, 1073 |
| ErhI | CCWWGG | 3 cut(s) | 147, 186, 231 |
| Esp3I | CGTCTC | 1 cut(s) | 984 |
| FaqI | GGGAC | 4 cut(s) | 314, 568, 763, 1245 |
| FbaI | TGATCA | 1 cut(s) | 1033 |
| FblI | GTMKAC | 1 cut(s) | 1107 |
| FokI | GGATG | 2 cut(s) | 405, 662 |
| FriOI | GRGCYC | 3 cut(s) | 162, 891, 1073 |
| FspBI | CTAG | 1 cut(s) | 15 |
| GlaI | GCGC | 1 cut(s) | 773 |
| GsaI | CCCAGC | 1 cut(s) | 1230 |
| GsuI | CTGGAG | 2 cut(s) | 716, 1008 |
| HaeII | RGCGCY | 1 cut(s) | 775 |
| HaeIII | GGCC | 2 cut(s) | 339, 497 |
| HapII | CCGG | 3 cut(s) | 432, 446, 1114 |
| HhaI | GCGC | 1 cut(s) | 774 |
| Hin1I | GRCGYC | 1 cut(s) | 1110 |
| Hin6I | GCGC | 1 cut(s) | 772 |
| HinP1I | GCGC | 1 cut(s) | 772 |
| HincII | GTYRAC | 2 cut(s) | 268, 1108 |
| HindII | GTYRAC | 2 cut(s) | 268, 1108 |
| HindIII | AAGCTT | 1 cut(s) | 1187 |
| HinfI | GANTC | 4 cut(s) | 68, 478, 783, 1327 |
| HpaI | GTTAAC | 1 cut(s) | 268 |
| HpaII | CCGG | 3 cut(s) | 432, 446, 1114 |
| HphI | GGTGA | 2 cut(s) | 1037, 1126 |
| Hpy166II | GTNNAC | 4 cut(s) | 10, 268, 658, 1108 |
| Hpy188I | TCNGA | 3 cut(s) | 67, 210, 1065 |
| Hpy188III | TCNNGA | 8 cut(s) | 122, 615, 892, 1037, 1114, 1150, 1193, 1331 |
| Hpy8I | GTNNAC | 4 cut(s) | 10, 268, 658, 1108 |
| Hpy99I | CGWCG | 1 cut(s) | 1112 |
| HpyAV | CCTTC | 2 cut(s) | 492, 1274 |
| HpyCH4III | ACNGT | 1 cut(s) | 901 |
| HpyCH4IV | ACGT | 2 cut(s) | 6, 1110 |
| HpyCH4V | TGCA | 7 cut(s) | 23, 33, 319, 580, 1204, 1298, 1346 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 26, 544, 547, 553, 556, 559, 586, 636, 916 |
| HpyF3I | CTNAG | 5 cut(s) | 356, 705, 768, 969, 1064 |
| HpySE526I | ACGT | 2 cut(s) | 6, 1110 |
| Hsp92I | GRCGYC | 1 cut(s) | 1110 |
| HspAI | GCGC | 1 cut(s) | 772 |
| Kpn2I | TCCGGA | 1 cut(s) | 1113 |
| Ksp22I | TGATCA | 1 cut(s) | 1033 |
| KspAI | GTTAAC | 1 cut(s) | 268 |
| Kzo9I | GATC | 5 cut(s) | 40, 844, 1033, 1116, 1161 |
| LguI | GCTCTTC | 1 cut(s) | 150 |
| LmnI | GCTCC | 5 cut(s) | 396, 571, 886, 951, 1068 |
| LweI | GCATC | 2 cut(s) | 856, 860 |
| MaeI | CTAG | 1 cut(s) | 15 |
| MaeII | ACGT | 2 cut(s) | 6, 1110 |
| MaeIII | GTNAC | 3 cut(s) | 1007, 1025, 1132 |
| MalI | GATC | 5 cut(s) | 42, 846, 1035, 1118, 1163 |
| MboI | GATC | 5 cut(s) | 40, 844, 1033, 1116, 1161 |
| MfeI | CAATTG | 1 cut(s) | 326 |
| MhlI | GDGCHC | 4 cut(s) | 162, 393, 891, 1073 |
| MluCI | AATT | 5 cut(s) | 192, 326, 818, 1243, 1350 |
| MlyI | GAGTC | 3 cut(s) | 472, 792, 1321 |
| MroI | TCCGGA | 1 cut(s) | 1113 |
| MroXI | GAANNNNTTC | 1 cut(s) | 822 |
| MseI | TTAA | 2 cut(s) | 267, 408 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1035, 1271 |
| MspA1I | CMGCKG | 4 cut(s) | 26, 494, 538, 562 |
| MspI | CCGG | 3 cut(s) | 432, 446, 1114 |
| MspR9I | CCNGG | 3 cut(s) | 432, 446, 447 |
| MunI | CAATTG | 1 cut(s) | 326 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 26, 544, 547, 553, 556, 559, 586, 636, 916 |
| NciI | CCSGG | 3 cut(s) | 432, 446, 447 |
| NcoI | CCATGG | 3 cut(s) | 147, 186, 231 |
| NdeII | GATC | 5 cut(s) | 40, 844, 1033, 1116, 1161 |
| NlaIV | GGNNCC | 4 cut(s) | 229, 613, 751, 825 |
| NmuCI | GTSAC | 2 cut(s) | 1025, 1132 |
| PagI | TCATGA | 2 cut(s) | 121, 1036 |
| PciSI | GCTCTTC | 1 cut(s) | 150 |
| PdmI | GAANNNNTTC | 1 cut(s) | 822 |
| PfeI | GAWTC | 1 cut(s) | 68 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 297 |
| PleI | GAGTC | 3 cut(s) | 472, 791, 1321 |
| PpsI | GAGTC | 3 cut(s) | 472, 791, 1321 |
| Ppu21I | YACGTR | 1 cut(s) | 7 |
| Psp124BI | GAGCTC | 3 cut(s) | 162, 891, 1073 |
| PspEI | GGTNACC | 1 cut(s) | 1025 |
| PspFI | CCCAGC | 1 cut(s) | 1226 |
| PspN4I | GGNNCC | 4 cut(s) | 229, 613, 751, 825 |
| PspPI | GGNCC | 5 cut(s) | 235, 338, 612, 750, 1147 |
| PstI | CTGCAG | 2 cut(s) | 25, 582 |
| PstNI | CAGNNNCTG | 1 cut(s) | 586 |
| PvuII | CAGCTG | 2 cut(s) | 26, 538 |
| RsaI | GTAC | 3 cut(s) | 5, 49, 599 |
| RsaNI | GTAC | 3 cut(s) | 4, 48, 598 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1035, 1271 |
| SacI | GAGCTC | 3 cut(s) | 162, 891, 1073 |
| SalI | GTCGAC | 1 cut(s) | 1106 |
| SapI | GCTCTTC | 1 cut(s) | 150 |
| SaqAI | TTAA | 2 cut(s) | 267, 408 |
| Sau3AI | GATC | 5 cut(s) | 40, 844, 1033, 1116, 1161 |
| Sau96I | GGNCC | 5 cut(s) | 235, 338, 612, 750, 1147 |
| ScaI | AGTACT | 1 cut(s) | 49 |
| SchI | GAGTC | 3 cut(s) | 472, 792, 1321 |
| ScrFI | CCNGG | 3 cut(s) | 432, 446, 447 |
| SduI | GDGCHC | 4 cut(s) | 162, 393, 891, 1073 |
| SfaNI | GCATC | 2 cut(s) | 856, 860 |
| SfcI | CTRYAG | 3 cut(s) | 21, 578, 855 |
| SinI | GGWCC | 4 cut(s) | 235, 612, 750, 1147 |
| SmaI | CCCGGG | 1 cut(s) | 447 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1035, 1271 |
| SmlI | CTYRAG | 2 cut(s) | 133, 890 |
| SmoI | CTYRAG | 2 cut(s) | 133, 890 |
| SpeI | ACTAGT | 1 cut(s) | 14 |
| Sse9I | AATT | 5 cut(s) | 192, 326, 818, 1243, 1350 |
| SsiI | CCGC | 6 cut(s) | 183, 494, 545, 551, 557, 560 |
| SspMI | CTAG | 1 cut(s) | 15 |
| SstI | GAGCTC | 3 cut(s) | 162, 891, 1073 |
| StyD4I | CCNGG | 3 cut(s) | 430, 444, 445 |
| StyI | CCWWGG | 3 cut(s) | 147, 186, 231 |
| TaaI | ACNGT | 1 cut(s) | 901 |
| TaiI | ACGT | 2 cut(s) | 9, 1113 |
| TaqI | TCGA | 3 cut(s) | 626, 847, 1107 |
| TaqII | GACCGA | 1 cut(s) | 493 |
| TasI | AATT | 5 cut(s) | 192, 326, 818, 1243, 1350 |
| TatI | WGTACW | 1 cut(s) | 47 |
| TauI | GCSGC | 5 cut(s) | 185, 497, 553, 559, 562 |
| TfiI | GAWTC | 1 cut(s) | 68 |
| Tru1I | TTAA | 2 cut(s) | 267, 408 |
| Tru9I | TTAA | 2 cut(s) | 267, 408 |
| TseFI | GTSAC | 2 cut(s) | 1025, 1132 |
| Tsp45I | GTSAC | 2 cut(s) | 1025, 1132 |
| TspDTI | ATGAA | 9 cut(s) | 138, 327, 728, 794, 1028, 1143, 1205, 1236, 1293 |
| TspMI | CCCGGG | 1 cut(s) | 445 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 297 |
| VpaK11BI | GGWCC | 4 cut(s) | 235, 612, 750, 1147 |
| XapI | RAATTY | 1 cut(s) | 1243 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 259 |
| XmaI | CCCGGG | 1 cut(s) | 445 |
| XmiI | GTMKAC | 1 cut(s) | 1107 |
| XmnI | GAANNNNTTC | 1 cut(s) | 822 |
| XspI | CTAG | 1 cut(s) | 15 |
| ZraI | GACGTC | 1 cut(s) | 1111 |
| ZrmI | AGTACT | 1 cut(s) | 49 |