MD04G1041500.v1.1

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
4913943 .. 4914452
510 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1041500.v1.1.491

Sequence Viewer

Length: 510 bp
ATGGCCAGACCTTCATCACTCCATCTGGTGTCTTTGGTGGGTCTCAAGAATCTCACTAAACTTTATTTGCTGGGAAAATTAGCCAACTTAGACAAGGACCCTTTGGAGTTCCCACCAAGCCTCAGGGACCTTACTTTATCATGCTCAAGGTTGAATGTTGATCCTATGCTGATGCTCCGGCGGCTTCCACACTTGACAGTCCTGAGGCTTTTGGCCAACTCTTACTCTGGAAGCAAAATGGTTTCTCAGCAAAGTGAATTTGGTTCACTTCGAATCCTGCAACTCTGGGTGCTGGAAGATCTAGAGGGGTGGGTGGTTGAGCAAGGAGCAATGCAAAACCTCCAGAAATTGGAAATCCGACGCTGCCATAAGCTAAAAAGCGTTCCGGAAACACTTATCAATTCCACTACCTTAGAGGAATTGACGCTCACAAATATGCCAGAGGAATTTGTTGCAGAGACTCAAATTCTATCTTTCAAGACCAATACGTGGAAATTGATCATAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

170

Amino Acids

19.31

Weight (kDa)

8.97

Isoelectric Point (pI)

52.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 39 - 126 4.9e-08 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000069)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G50180 AT1G53350 AT1G58390 AT1G58390 AT1G58400 AT1G58400 AT1G58400 AT1G58410 AT1G58410 AT1G58410 AT1G58410 AT1G58602 AT1G58602 AT1G58807 AT1G58807 AT1G58848 AT1G58848 AT1G59124 AT1G59124 AT1G59218 AT1G59218 AT1G59218 AT1G59620 AT1G59780 AT1G59780 AT5G35450 AT5G35450 AT5G43470 AT5G43470 AT5G43470 AT5G43470 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620
fragaria_vesca FvH4_4g04072 FvH4_4g22931 FvH4_4g22931 FvH4_4g22940 FvH4_6g49940 FvH4_6g49940 FvH4_7g08100 FvH4_7g08870 FvH4_7g08870 FvH4_7g09280 FvH4_7g09290 FvH4_7g15190 FvH4_7g15200 FvH4_7g15240 FvH4_7g15240 FvH4_7g33440
malus_domestica MD00G1174600.v1.1 MD01G1113700.v1.1 MD03G1071300.v1.1 MD04G1041500.v1.1 MD04G1238000.v1.1 MD07G1029000.v1.1 MD07G1092100.v1.1 MD07G1092300.v1.1 MD07G1092600.v1.1 MD12G1256300.v1.1 MD13G1128200.v1.1 MD13G1128400.v1.1 MD17G1268000.v1.1
prunus_persica Prupe.1G041300_v2.0.a1 Prupe.1G041300_v2.0.a1 Prupe.1G042900_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043600_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G046700_v2.0.a1 Prupe.1G047700_v2.0.a1 Prupe.1G047900_v2.0.a1 Prupe.1G048000_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G049900_v2.0.a1 Prupe.1G051500_v2.0.a1 Prupe.1G051800_v2.0.a1 Prupe.1G051900_v2.0.a1 Prupe.1G052200_v2.0.a1 Prupe.1G194900_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117300_v2.0.a1 Prupe.2G117400_v2.0.a1 Prupe.2G117500_v2.0.a1 Prupe.2G117700_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G119900_v2.0.a1
pyrus_communis pycom03g05750 pycom04g21110 pycom07g07530 pycom07g07590 pycom13g11110 pycom13g11140 pycom13g11160 pycom13g11170 pycom17g26680
rosa_chinensis RchiOBHm_Chr1g0341231 RchiOBHm_Chr1g0344091 RchiOBHm_Chr1g0344161 RchiOBHm_Chr1g0345001 RchiOBHm_Chr1g0345351 RchiOBHm_Chr1g0345371 RchiOBHm_Chr1g0345391 RchiOBHm_Chr1g0345531 RchiOBHm_Chr1g0345551 RchiOBHm_Chr1g0345571 RchiOBHm_Chr1g0345581 RchiOBHm_Chr1g0345661 RchiOBHm_Chr1g0345691 RchiOBHm_Chr1g0345761 RchiOBHm_Chr1g0345791 RchiOBHm_Chr1g0345821 RchiOBHm_Chr1g0345911 RchiOBHm_Chr1g0345941 RchiOBHm_Chr1g0357611 RchiOBHm_Chr1g0357911 RchiOBHm_Chr1g0357921 RchiOBHm_Chr1g0357931 RchiOBHm_Chr1g0357971 RchiOBHm_Chr1g0358121 RchiOBHm_Chr1g0383491 RchiOBHm_Chr1g0383511 RchiOBHm_Chr1g0383521 RchiOBHm_Chr3g0480581 RchiOBHm_Chr4g0394341 RchiOBHm_Chr4g0394361 RchiOBHm_Chr4g0394411 RchiOBHm_Chr4g0394441 RchiOBHm_Chr4g0407681 RchiOBHm_Chr4g0429191 RchiOBHm_Chr4g0429201 RchiOBHm_Chr4g0429211 RchiOBHm_Chr4g0429221 RchiOBHm_Chr6g0265091
rosa_laevigata RLG00000007088 RLG00000008700 RLG00000009190 RLG00000009702 RLG00000014210 RLG00000028829 RLG00000028833 RLG00000028837 RLG00000028838 RLG00000028921 RLG00000028926
rosa_multiflora Rmu_co8366955.1_g000001 Rmu_co8394205.1_g000001 Rmu_sc0000019.1_g000001 Rmu_sc0000054.1_g000031 Rmu_sc0000054.1_g000033 Rmu_sc0000200.1_g000002 Rmu_sc0000200.1_g000007 Rmu_sc0000200.1_g000018 Rmu_sc0000200.1_g000020 Rmu_sc0000200.1_g000021 Rmu_sc0000251.1_g000012 Rmu_sc0000251.1_g000015 Rmu_sc0000251.1_g000028 Rmu_sc0000253.1_g000015 Rmu_sc0000255.1_g000045 Rmu_sc0000255.1_g000046 Rmu_sc0001292.1_g000013 Rmu_sc0001292.1_g000018 Rmu_sc0001292.1_g000028 Rmu_sc0001292.1_g000029 Rmu_sc0001349.1_g000006 Rmu_sc0001349.1_g000014 Rmu_sc0001582.1_g000006 Rmu_sc0001582.1_g000018 Rmu_sc0001582.1_g000020 Rmu_sc0001692.1_g000007 Rmu_sc0001692.1_g000024 Rmu_sc0001692.1_g000026 Rmu_sc0001692.1_g000029 Rmu_sc0001692.1_g000030 Rmu_sc0001835.1_g000006 Rmu_sc0001835.1_g000010 Rmu_sc0002071.1_g000005 Rmu_sc0002276.1_g000002 Rmu_sc0002276.1_g000009 Rmu_sc0002329.1_g000018 Rmu_sc0002329.1_g000023 Rmu_sc0002329.1_g000025 Rmu_sc0002523.1_g000005 Rmu_sc0003573.1_g000005 Rmu_sc0003573.1_g000006 Rmu_sc0004099.1_g000021 Rmu_sc0005812.1_g000009 Rmu_sc0006271.1_g000002 Rmu_sc0006287.1_g000038 Rmu_sc0006439.1_g000008 Rmu_sc0007456.1_g000004 Rmu_sc0007581.1_g000009 Rmu_sc0007849.1_g000014 Rmu_sc0008115.1_g000012 Rmu_sc0010521.1_g000004 Rmu_sc0012471.1_g000017 Rmu_sc0014762.1_g000001 Rmu_sc0015150.1_g000003 Rmu_sc0017221.1_g000001 Rmu_sc0017299.1_g000001 Rmu_sc0017299.1_g000002 Rmu_sc0021457.1_g000001 Rmu_sc0022067.1_g000001 Rmu_sc0033275.1_g000001 Rmu_ssc0000245.1_g000012 Rmu_ssc0000359.1_g000035 Rmu_ssc0000359.1_g000067 Rmu_ssc0000359.1_g000072 Rmu_ssc0000434.1_g000005 Rmu_ssc0000434.1_g000007
rosa_roxburghii Rroxscaffold_4G00298420 Rroxscaffold_4G00298720 Rroxscaffold_4G00308990 Rroxscaffold_4G00309000 Rroxscaffold_4G00309010 Rroxscaffold_4G00309050 Rroxscaffold_4G00309070 Rroxscaffold_4G00309100 Rroxscaffold_4G00310030 Rroxscaffold_4G00310050 Rroxscaffold_4G00311880 Rroxscaffold_5G00339420 Rroxscaffold_5G00339450 Rroxscaffold_5G00344880 Rroxscaffold_5G00352270 Rroxscaffold_5G00362240 Rroxscaffold_5G00370840 Rroxscaffold_7G00202970
rosa_rugosa Rorug01G0159100.1 Rorug01G0159200.1 Rorug01G0171700 Rorug01G0171900 Rorug01G0172000 Rorug01G0191700 Rorug01G0191800 Rorug01G0256900 Rorug01G0257000 Rorug01G0257100 Rorug03G0198000 Rorug03G0366300.1 Rorug03G0366400.1 Rorug03G0366500.1 Rorug04G0081200 Rorug04G0081200 Rorug04G0081200 Rorug04G0233700 Rorug04G0233800 Rorug04G0233800 Rorug06G0013300
rosa_samantha Rh1CG138800 Rh1CG161300 Rh1CG173800 Rh1CG179800 Rh1CG180100 Rh1CG180500 Rh1CG180800 Rh1CG180900 Rh1CG194100 Rh1DG205100 Rh3AG236300 Rh4AG052000 Rh4AG052100 Rh4AG145900 Rh4AG289700 Rh4AG289800 Rh6AG136800 Rh6AG137300 Rh6BG133600 Rh6CG132000 Rh6CG134000 Rh6DG119300
rosa_wichuraiana Rw0G003420 Rw1G015500 Rw1G016110 Rw1G016180 Rw1G016210 Rw1G016230 Rw1G016280 Rw1G016440 Rw1G016450 Rw1G016460 Rw1G016480 Rw1G017490 Rw1G024140 Rw1G024160 Rw3G022530 Rw4G004140 Rw4G004190 Rw4G011850 Rw6G011800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 349, 489
AccIII TCCGGA 1 cut(s) 385
AciI CCGC 1 cut(s) 181
AclWI GGATC 1 cut(s) 155
AcoI YGGCCR 2 cut(s) 3, 213
AcsI RAATTY 3 cut(s) 257, 446, 465
AfiI CCNNNNNNNGG 2 cut(s) 349, 489
AgsI TTSAA 2 cut(s) 154, 478
AluBI AGCT 1 cut(s) 373
AluI AGCT 1 cut(s) 373
Alw26I GTCTC 2 cut(s) 47, 452
AlwI GGATC 1 cut(s) 155
Aor13HI TCCGGA 1 cut(s) 385
AoxI GGCC 2 cut(s) 3, 213
ApeKI GCWGC 1 cut(s) 363
ApoI RAATTY 3 cut(s) 257, 446, 465
AspS9I GGNCC 2 cut(s) 97, 127
AsuII TTCGAA 1 cut(s) 271
AvaII GGWCC 2 cut(s) 97, 127
AxyI CCTNAGG 2 cut(s) 122, 203
BalI TGGCCA 2 cut(s) 5, 215
BbvI GCAGC 1 cut(s) 350
BccI CCATC 1 cut(s) 30
BclI TGATCA 1 cut(s) 498
BcoDI GTCTC 2 cut(s) 47, 452
BfaI CTAG 1 cut(s) 302
BglII AGATCT 1 cut(s) 298
BisI GCNGC 2 cut(s) 182, 364
BlsI GCNGC 2 cut(s) 183, 365
Bme18I GGWCC 2 cut(s) 97, 127
BmgT120I GGNCC 2 cut(s) 97, 127
BmiI GGNNCC 2 cut(s) 99, 128
BmsI GCATC 1 cut(s) 162
BpmI CTGGAG 1 cut(s) 326
Bpu14I TTCGAA 1 cut(s) 271
BpuEI CTTGAG 2 cut(s) 29, 130
BsaAI YACGTR 1 cut(s) 489
BsaI GGTCTC 1 cut(s) 47
BsaWI WCCGGW 1 cut(s) 385
Bsc4I CCNNNNNNNGG 2 cut(s) 349, 489
Bse21I CCTNAGG 2 cut(s) 122, 203
Bse3DI GCAATG 1 cut(s) 336
BseAI TCCGGA 1 cut(s) 385
BseLI CCNNNNNNNGG 2 cut(s) 349, 489
BseMI GCAATG 1 cut(s) 336
BseMII CTCAG 3 cut(s) 136, 194, 260
BseXI GCAGC 1 cut(s) 350
BseYI CCCAGC 1 cut(s) 70
BshFI GGCC 2 cut(s) 5, 215
BsiSI CCGG 2 cut(s) 178, 386
BslFI GGGAC 1 cut(s) 140
BslI CCNNNNNNNGG 2 cut(s) 349, 489
BsmAI GTCTC 2 cut(s) 47, 452
BsmFI GGGAC 1 cut(s) 140
BsnI GGCC 2 cut(s) 5, 215
Bso31I GGTCTC 1 cut(s) 47
Bsp119I TTCGAA 1 cut(s) 271
Bsp13I TCCGGA 1 cut(s) 385
Bsp143I GATC 3 cut(s) 160, 298, 498
BspACI CCGC 1 cut(s) 181
BspANI GGCC 2 cut(s) 5, 215
BspCNI CTCAG 3 cut(s) 135, 195, 259
BspEI TCCGGA 1 cut(s) 385
BspLI GGNNCC 2 cut(s) 99, 128
BspPI GGATC 1 cut(s) 155
BspT104I TTCGAA 1 cut(s) 271
BspTNI GGTCTC 1 cut(s) 47
BsrDI GCAATG 1 cut(s) 336
BssMI GATC 3 cut(s) 160, 298, 498
Bst4CI ACNGT 1 cut(s) 199
BstBAI YACGTR 1 cut(s) 489
BstBI TTCGAA 1 cut(s) 271
BstDEI CTNAG 5 cut(s) 88, 122, 203, 246, 412
BstKTI GATC 3 cut(s) 163, 301, 501
BstMAI GTCTC 2 cut(s) 47, 452
BstMBI GATC 3 cut(s) 160, 298, 498
BstMWI GCNNNNNNNGC 1 cut(s) 181
BstV1I GCAGC 1 cut(s) 350
BstX2I RGATCY 1 cut(s) 298
BstYI RGATCY 1 cut(s) 298
Bsu36I CCTNAGG 2 cut(s) 122, 203
BsuRI GGCC 2 cut(s) 5, 215
Cfr13I GGNCC 2 cut(s) 97, 127
CseI GACGC 2 cut(s) 369, 433
CviAII CATG 1 cut(s) 141
CviJI RGCY 7 cut(s) 5, 83, 120, 184, 208, 215, 373
CviKI_1 RGCY 7 cut(s) 5, 83, 120, 184, 208, 215, 373
DdeI CTNAG 5 cut(s) 88, 122, 203, 246, 412
DpnI GATC 3 cut(s) 162, 300, 500
DpnII GATC 3 cut(s) 160, 298, 498
EaeI YGGCCR 2 cut(s) 3, 213
Eco31I GGTCTC 1 cut(s) 47
Eco47I GGWCC 2 cut(s) 97, 127
Eco81I CCTNAGG 2 cut(s) 122, 203
EcoO109I RGGNCCY 2 cut(s) 97, 127
FaeI CATG 1 cut(s) 144
FaiI YATR 5 cut(s) 142, 167, 369, 437, 503
FaqI GGGAC 1 cut(s) 140
FatI CATG 1 cut(s) 140
FbaI TGATCA 1 cut(s) 498
Fnu4HI GCNGC 2 cut(s) 182, 364
Fsp4HI GCNGC 2 cut(s) 182, 364
FspBI CTAG 1 cut(s) 302
GluI GCNGC 2 cut(s) 182, 364
GsaI CCCAGC 1 cut(s) 74
GsuI CTGGAG 1 cut(s) 326
HaeIII GGCC 2 cut(s) 5, 215
HapII CCGG 2 cut(s) 178, 386
HgaI GACGC 2 cut(s) 369, 433
Hin1II CATG 1 cut(s) 144
HinfI GANTC 3 cut(s) 49, 273, 460
HpaII CCGG 2 cut(s) 178, 386
Hpy166II GTNNAC 1 cut(s) 266
Hpy188I TCNGA 1 cut(s) 359
Hpy188III TCNNGA 7 cut(s) 46, 202, 228, 302, 343, 386, 478
Hpy8I GTNNAC 1 cut(s) 266
Hpy99I CGWCG 1 cut(s) 363
HpyAV CCTTC 1 cut(s) 21
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 1 cut(s) 488
HpyCH4V TGCA 3 cut(s) 280, 334, 455
HpyF10VI GCNNNNNNNGC 1 cut(s) 181
HpyF3I CTNAG 5 cut(s) 88, 122, 203, 246, 412
HpySE526I ACGT 1 cut(s) 488
Hsp92II CATG 1 cut(s) 144
Kpn2I TCCGGA 1 cut(s) 385
Ksp22I TGATCA 1 cut(s) 498
Kzo9I GATC 3 cut(s) 160, 298, 498
LmnI GCTCC 2 cut(s) 180, 326
Lsp1109I GCAGC 1 cut(s) 350
LweI GCATC 1 cut(s) 162
MaeI CTAG 1 cut(s) 302
MaeII ACGT 1 cut(s) 488
MalI GATC 3 cut(s) 162, 300, 500
MboI GATC 3 cut(s) 160, 298, 498
MboII GAAGA 1 cut(s) 308
MflI RGATCY 1 cut(s) 298
MlsI TGGCCA 2 cut(s) 5, 215
MluCI AATT 8 cut(s) 77, 257, 347, 400, 419, 446, 465, 494
MluNI TGGCCA 2 cut(s) 5, 215
MlyI GAGTC 1 cut(s) 454
MmeI TCCRAC 1 cut(s) 382
MnlI CCTC 6 cut(s) 131, 198, 298, 350, 409, 436
Mox20I TGGCCA 2 cut(s) 5, 215
MroI TCCGGA 1 cut(s) 385
MscI TGGCCA 2 cut(s) 5, 215
MslI CAYNNNNRTG 1 cut(s) 434
Msp20I TGGCCA 2 cut(s) 5, 215
MspI CCGG 2 cut(s) 178, 386
MwoI GCNNNNNNNGC 1 cut(s) 181
NdeII GATC 3 cut(s) 160, 298, 498
NlaIII CATG 1 cut(s) 144
NlaIV GGNNCC 2 cut(s) 99, 128
NspV TTCGAA 1 cut(s) 271
PfeI GAWTC 2 cut(s) 49, 273
PflMI CCANNNNNTGG 2 cut(s) 349, 489
PkrI GCNGC 2 cut(s) 183, 365
PleI GAGTC 1 cut(s) 454
PpsI GAGTC 1 cut(s) 454
Ppu21I YACGTR 1 cut(s) 489
PpuMI RGGWCCY 2 cut(s) 97, 127
Psp5II RGGWCCY 2 cut(s) 97, 127
PspFI CCCAGC 1 cut(s) 70
PspN4I GGNNCC 2 cut(s) 99, 128
PspPI GGNCC 2 cut(s) 97, 127
PspPPI RGGWCCY 2 cut(s) 97, 127
PsuI RGATCY 1 cut(s) 298
RseI CAYNNNNRTG 1 cut(s) 434
SatI GCNGC 2 cut(s) 182, 364
Sau3AI GATC 3 cut(s) 160, 298, 498
Sau96I GGNCC 2 cut(s) 97, 127
SchI GAGTC 1 cut(s) 454
SetI ASST 8 cut(s) 13, 132, 152, 342, 375, 413, 491, 509
SfaNI GCATC 1 cut(s) 162
SfuI TTCGAA 1 cut(s) 271
SinI GGWCC 2 cut(s) 97, 127
SmiMI CAYNNNNRTG 1 cut(s) 434
SmlI CTYRAG 2 cut(s) 44, 145
SmoI CTYRAG 2 cut(s) 44, 145
Sse9I AATT 8 cut(s) 77, 257, 347, 400, 419, 446, 465, 494
SsiI CCGC 1 cut(s) 181
SspMI CTAG 1 cut(s) 302
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 1 cut(s) 491
TaqI TCGA 1 cut(s) 271
TasI AATT 8 cut(s) 77, 257, 347, 400, 419, 446, 465, 494
TauI GCSGC 1 cut(s) 184
TfiI GAWTC 2 cut(s) 49, 273
TseI GCWGC 1 cut(s) 363
Van91I CCANNNNNTGG 2 cut(s) 349, 489
VpaK11BI GGWCC 2 cut(s) 97, 127
XapI RAATTY 3 cut(s) 257, 446, 465
XbaI TCTAGA 1 cut(s) 301
XspI CTAG 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.