Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002276.1

Orthogroup ID

OG0000069

Physical Location & Seq

Genomic Coordinates Reverse (-)

40456 .. 46258

Gene Structure 5803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002276.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3318 bp

atggctgaaggtgttgttacagttgtggctgaagggatcaagcccctcggagagttcatcattcagcaagcgaaattcttgagtggtgtcagctatcaaattgagcttgcgcagattgagctacatttgatccggggatttctaaaagatgcagatacgaggcaacaagatgaagaactagtacgcatttgtgttaaacttatcagagatgctgcttatgacttggaggatgtcattgaatcttttgccttgaaagtggcttccaggaggagaggaggtactgtgaagattgttctcaaaaggattacctgcatctttaatgaaggacttaatcgatacaagattgcgtccgatattgaggatattatgaccaaactttctcatctgaggtcaagtttgcaaagttataacatcaggcaaacaagtggggctgatggtgtcgcttcttcttttaagaggcaacgagaccgaaggctaacttatgctcatcaagttgaaaatcacattgttggcttggaggaaagcacagatgtactggtgaaggagttggtgagagaaggaaagagtcaccgtgttgtttctatttgggggatgggcggctccggaaaaaccactcttgcaaaacaggtttttcttcaaaatgaagttaagcgtcattttgattgttttgcttgggtctgtatatctcaacaatgggaaggaaaggatgtattggaagagattttaattaaactcacttccccaacaacagagagaagaaaagaaatttccaaaatgaaaaaggatgaaatagcaagggaggtctgtagtatccaacgagaaaagagatgtctggtggtccttgatgacatatggactcaaggggcttggcattcgataaaagctggattcccaatcagtgaggaaaccgagagccggatattacttactactcgcaagaaagaagttgccttgcttgcatccggaaatgatcgtctccaccaacctcaacaattaaatgacaagcaaatctgggaactgtttgaaaagatagccatatgtgaaagcgacaaaacagacttggaagtttataaaaagaagagagaattaggaaagaagatgcttgtacattgttcaggtttgccattagccatcagtgtgcttgctggtcttctaagtagacgagagaaagttgaggcgtgggaaacagtacttagaaatgttgatcaatacataatgagaggcacaaatgtccttgaaagagaaaacacaggtgaagaatatggtgtatcgagtgtcttggcattgagttatgatgatttaccatctaacttaaaactctgctttctatacttggcccaatttcgtgaggatcatgagatacaagtaacaagattaactcaattatggattgcagaagggtttatagcttcaacatcagaaatacagggttcagtggaaataatggaagatgtatcatatggctgcgtaactgaactggtggaaagatctatgattcaagttgtaaaatatggtttaagtgggaaggtgaaaacgttccgtctccatgatctgatgcgggacttgtgcttgcaaaagacaaaagaggagaactttctcggtattattaacttttctgttggtccggtatctaatgcaacactgattggtaaggttcgaagatttgccctctatttggacgaaaatgttaaatatgagttcagtagtgagaatggaagagatggccacattaggtctctattatactttgccccaaaattcttcgaccaaaagtggaacaaaagaataatacgatcagtattcaatgacttcaaattgcttagagtcttgaagtttgaaaatatatgtacggagtttgagttaccaaagacgattgggaatctagtccacttgaggtttctgagtctgaagggtagtacatttggtgacttgccatcatctgtatctaatttggtactcttgcaaactctagatctgcggggaaatgataagcttccctctgcatcttgttctttgctgctctgtgaaaaaatgtgtgaattaatctggggaactagctgtccaattttttgtaaccttatcagacaagaaatctttagggagatcacaatcaaaatcaaaatcaaaaatgtgttttggaatttagagcaactgaggcatttgtatttaccttctgagtgcagtgttagtgagaaactgtcatttgcaaggctgtgcaatttgcagacgttggtcaatgttagaattgagaagtgtgatttgaatggtcttgttcaattaagcaatctgaagaaactaggcataaggtcatcaaagtctagtgagttggaaaagctgaaggacatgttgatatcaaggaatagaacatttaaacatcttcggtctctatctctggagactgatctgtctctatctcggactgttcttgggtatctacctctgcagactgatcggaatattataccaggtgatatagtattaaggtgtcctcatttatacaagctgcgattgatagggaaaatgacagcgttgccgaaagagcttccaaacctcaccaagttgacgctgattagaacaagactgaaggttgaccagattgaaatactggagaagctgcgcaacttaagggtgctttacctcggtcggcattctttcgaatcagaaacattggttttctcccatggaggctttcctcatctggaatttcttacccttgataaattgtatcatttgaaggagtggagggtggagacagaagccatgcctagtcttcagagattgcgcattgaaaggtgcttggaattgggggcagttccagatgggcttcaggagattactaccctcaaggaattaacaattgacgggatgcccagtagattctgcagaagggttggggaaggaggagaggatttctacaaaatcaaacatgtgccttctcttataatcacaaatattcaacgcgactacaagaaggacaaggagccagaaatggaggaagcagcaggcgcgtcccaagtagtagttacgggtccagtcggtgactctgatcaggaattaactgtggatggggtcaagacaatcaagaattacatcaaacgcttggttcaggaggatacagacaaagccatcgtgcttattcaacaaaatctgactccctttggaaagcgcttcataagtgatatgagatcaaagtactacttggaggttttccaggaggcagaattgttggttcaagaacatgttctagttcctgagcataaggatcttaaaaatgaggaaaagaagacattgctggagaggtttcgactatcaaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0002230 GO:0002238 GO:0002239 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009615 GO:0009620 GO:0009626 GO:0009628 GO:0009637 GO:0009642 GO:0009646 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0012501 GO:0014070 GO:0016020 GO:0023052 GO:0030054 GO:0031347 GO:0032101 GO:0032870 GO:0033554 GO:0034050 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0043207 GO:0043900 GO:0044464 GO:0045087 GO:0046677 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071944 GO:0080134 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

1105

Amino Acids

126.92

Weight (kDa)

8.7

Isoelectric Point (pI)

45.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G50180 AT1G53350 AT1G58390 AT1G58390 AT1G58400 AT1G58400 AT1G58400 AT1G58410 AT1G58410 AT1G58410 AT1G58410 AT1G58602 AT1G58602 AT1G58807 AT1G58807 AT1G58848 AT1G58848 AT1G59124 AT1G59124 AT1G59218 AT1G59218 AT1G59218 AT1G59620 AT1G59780 AT1G59780 AT5G35450 AT5G35450 AT5G43470 AT5G43470 AT5G43470 AT5G43470 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620
fragaria_vesca	FvH4_4g04072 FvH4_4g22931 FvH4_4g22931 FvH4_4g22940 FvH4_6g49940 FvH4_6g49940 FvH4_7g08100 FvH4_7g08870 FvH4_7g08870 FvH4_7g09280 FvH4_7g09290 FvH4_7g15190 FvH4_7g15200 FvH4_7g15240 FvH4_7g15240 FvH4_7g33440
malus_domestica	MD00G1174600.v1.1 MD01G1113700.v1.1 MD03G1071300.v1.1 MD04G1041500.v1.1 MD04G1238000.v1.1 MD07G1029000.v1.1 MD07G1092100.v1.1 MD07G1092300.v1.1 MD07G1092600.v1.1 MD12G1256300.v1.1 MD13G1128200.v1.1 MD13G1128400.v1.1 MD17G1268000.v1.1
prunus_persica	Prupe.1G041300_v2.0.a1 Prupe.1G041300_v2.0.a1 Prupe.1G042900_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043600_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G046700_v2.0.a1 Prupe.1G047700_v2.0.a1 Prupe.1G047900_v2.0.a1 Prupe.1G048000_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G049900_v2.0.a1 Prupe.1G051500_v2.0.a1 Prupe.1G051800_v2.0.a1 Prupe.1G051900_v2.0.a1 Prupe.1G052200_v2.0.a1 Prupe.1G194900_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117300_v2.0.a1 Prupe.2G117400_v2.0.a1 Prupe.2G117500_v2.0.a1 Prupe.2G117700_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G119900_v2.0.a1
pyrus_communis	pycom03g05750 pycom04g21110 pycom07g07530 pycom07g07590 pycom13g11110 pycom13g11140 pycom13g11160 pycom13g11170 pycom17g26680
rosa_chinensis	RchiOBHm_Chr1g0341231 RchiOBHm_Chr1g0344091 RchiOBHm_Chr1g0344161 RchiOBHm_Chr1g0345001 RchiOBHm_Chr1g0345351 RchiOBHm_Chr1g0345371 RchiOBHm_Chr1g0345391 RchiOBHm_Chr1g0345531 RchiOBHm_Chr1g0345551 RchiOBHm_Chr1g0345571 RchiOBHm_Chr1g0345581 RchiOBHm_Chr1g0345661 RchiOBHm_Chr1g0345691 RchiOBHm_Chr1g0345761 RchiOBHm_Chr1g0345791 RchiOBHm_Chr1g0345821 RchiOBHm_Chr1g0345911 RchiOBHm_Chr1g0345941 RchiOBHm_Chr1g0357611 RchiOBHm_Chr1g0357911 RchiOBHm_Chr1g0357921 RchiOBHm_Chr1g0357931 RchiOBHm_Chr1g0357971 RchiOBHm_Chr1g0358121 RchiOBHm_Chr1g0383491 RchiOBHm_Chr1g0383511 RchiOBHm_Chr1g0383521 RchiOBHm_Chr3g0480581 RchiOBHm_Chr4g0394341 RchiOBHm_Chr4g0394361 RchiOBHm_Chr4g0394411 RchiOBHm_Chr4g0394441 RchiOBHm_Chr4g0407681 RchiOBHm_Chr4g0429191 RchiOBHm_Chr4g0429201 RchiOBHm_Chr4g0429211 RchiOBHm_Chr4g0429221 RchiOBHm_Chr6g0265091
rosa_laevigata	RLG00000007088 RLG00000008700 RLG00000009190 RLG00000009702 RLG00000014210 RLG00000028829 RLG00000028833 RLG00000028837 RLG00000028838 RLG00000028921 RLG00000028926
rosa_multiflora	Rmu_co8366955.1_g000001 Rmu_co8394205.1_g000001 Rmu_sc0000019.1_g000001 Rmu_sc0000054.1_g000031 Rmu_sc0000054.1_g000033 Rmu_sc0000200.1_g000002 Rmu_sc0000200.1_g000007 Rmu_sc0000200.1_g000018 Rmu_sc0000200.1_g000020 Rmu_sc0000200.1_g000021 Rmu_sc0000251.1_g000012 Rmu_sc0000251.1_g000015 Rmu_sc0000251.1_g000028 Rmu_sc0000253.1_g000015 Rmu_sc0000255.1_g000045 Rmu_sc0000255.1_g000046 Rmu_sc0001292.1_g000013 Rmu_sc0001292.1_g000018 Rmu_sc0001292.1_g000028 Rmu_sc0001292.1_g000029 Rmu_sc0001349.1_g000006 Rmu_sc0001349.1_g000014 Rmu_sc0001582.1_g000006 Rmu_sc0001582.1_g000018 Rmu_sc0001582.1_g000020 Rmu_sc0001692.1_g000007 Rmu_sc0001692.1_g000024 Rmu_sc0001692.1_g000026 Rmu_sc0001692.1_g000029 Rmu_sc0001692.1_g000030 Rmu_sc0001835.1_g000006 Rmu_sc0001835.1_g000010 Rmu_sc0002071.1_g000005 Rmu_sc0002276.1_g000002 Rmu_sc0002276.1_g000009 Rmu_sc0002329.1_g000018 Rmu_sc0002329.1_g000023 Rmu_sc0002329.1_g000025 Rmu_sc0002523.1_g000005 Rmu_sc0003573.1_g000005 Rmu_sc0003573.1_g000006 Rmu_sc0004099.1_g000021 Rmu_sc0005812.1_g000009 Rmu_sc0006271.1_g000002 Rmu_sc0006287.1_g000038 Rmu_sc0006439.1_g000008 Rmu_sc0007456.1_g000004 Rmu_sc0007581.1_g000009 Rmu_sc0007849.1_g000014 Rmu_sc0008115.1_g000012 Rmu_sc0010521.1_g000004 Rmu_sc0012471.1_g000017 Rmu_sc0014762.1_g000001 Rmu_sc0015150.1_g000003 Rmu_sc0017221.1_g000001 Rmu_sc0017299.1_g000001 Rmu_sc0017299.1_g000002 Rmu_sc0021457.1_g000001 Rmu_sc0022067.1_g000001 Rmu_sc0033275.1_g000001 Rmu_ssc0000245.1_g000012 Rmu_ssc0000359.1_g000035 Rmu_ssc0000359.1_g000067 Rmu_ssc0000359.1_g000072 Rmu_ssc0000434.1_g000005 Rmu_ssc0000434.1_g000007
rosa_roxburghii	Rroxscaffold_4G00298420 Rroxscaffold_4G00298720 Rroxscaffold_4G00308990 Rroxscaffold_4G00309000 Rroxscaffold_4G00309010 Rroxscaffold_4G00309050 Rroxscaffold_4G00309070 Rroxscaffold_4G00309100 Rroxscaffold_4G00310030 Rroxscaffold_4G00310050 Rroxscaffold_4G00311880 Rroxscaffold_5G00339420 Rroxscaffold_5G00339450 Rroxscaffold_5G00344880 Rroxscaffold_5G00352270 Rroxscaffold_5G00362240 Rroxscaffold_5G00370840 Rroxscaffold_7G00202970
rosa_rugosa	Rorug01G0159100.1 Rorug01G0159200.1 Rorug01G0171700 Rorug01G0171900 Rorug01G0172000 Rorug01G0191700 Rorug01G0191800 Rorug01G0256900 Rorug01G0257000 Rorug01G0257100 Rorug03G0198000 Rorug03G0366300.1 Rorug03G0366400.1 Rorug03G0366500.1 Rorug04G0081200 Rorug04G0081200 Rorug04G0081200 Rorug04G0233700 Rorug04G0233800 Rorug04G0233800 Rorug06G0013300
rosa_samantha	Rh1CG138800 Rh1CG161300 Rh1CG173800 Rh1CG179800 Rh1CG180100 Rh1CG180500 Rh1CG180800 Rh1CG180900 Rh1CG194100 Rh1DG205100 Rh3AG236300 Rh4AG052000 Rh4AG052100 Rh4AG145900 Rh4AG289700 Rh4AG289800 Rh6AG136800 Rh6AG137300 Rh6BG133600 Rh6CG132000 Rh6CG134000 Rh6DG119300
rosa_wichuraiana	Rw0G003420 Rw1G015500 Rw1G016110 Rw1G016180 Rw1G016210 Rw1G016230 Rw1G016280 Rw1G016440 Rw1G016450 Rw1G016460 Rw1G016480 Rw1G017490 Rw1G024140 Rw1G024160 Rw3G022530 Rw4G004140 Rw4G004190 Rw4G011850 Rw6G011800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	408, 1071, 2942
AasI	GACNNNNNNGTC	1 cut(s)	2404
Acc16I	TGCGCA	3 cut(s)	111, 2618, 2783
Acc36I	ACCTGC	1 cut(s)	317
AccI	GTMKAC	1 cut(s)	1159
AccII	CGCG	2 cut(s)	2961, 3008
AccIII	TCCGGA	2 cut(s)	602, 962
AciI	CCGC	3 cut(s)	597, 1558, 1978
AclI	AACGTT	1 cut(s)	1535
AclWI	GGATC	4 cut(s)	44, 124, 1359, 3270
AcoI	YGGCCR	1 cut(s)	1723
AcsI	RAATTY	5 cut(s)	74, 765, 1757, 2140, 2702
AcuI	CTGAAG	8 cut(s)	27, 51, 1928, 2309, 2357, 2603, 2756, 2810
AfaI	GTAC	9 cut(s)	183, 280, 534, 1107, 1191, 1849, 1918, 1956, 3194
AfeI	AGCGCT	1 cut(s)	3167
AfiI	CCNNNNNNNGG	2 cut(s)	915, 1675
AflII	CTTAAG	1 cut(s)	2623
AflIII	ACRYGT	3 cut(s)	2343, 2926, 3238
AhlI	ACTAGT	1 cut(s)	178
AjnI	CCWGG	3 cut(s)	263, 2464, 3210
AloI	GAACNNNNNNTCC	2 cut(s)	2044, 2076
Alw26I	GTCTC	8 cut(s)	459, 980, 1547, 1740, 2388, 2390, 2412, 2744
AlwI	GGATC	4 cut(s)	44, 124, 1359, 3270
Aor13HI	TCCGGA	2 cut(s)	602, 962
Aor51HI	AGCGCT	1 cut(s)	3167
AoxI	GGCC	2 cut(s)	1335, 1723
ApeKI	GCWGC	6 cut(s)	212, 1464, 2017, 2503, 2614, 2999
ApoI	RAATTY	5 cut(s)	74, 765, 1757, 2140, 2702
AseI	ATTAAT	1 cut(s)	2042
Asp700I	GAANNNNTTC	2 cut(s)	1535, 3240
AspLEI	GCGC	5 cut(s)	112, 2619, 2784, 3008, 3168
AspS9I	GGNCC	4 cut(s)	838, 1336, 1622, 3029
AsuC2I	CCSGG	1 cut(s)	134
AsuHPI	GGTGA	9 cut(s)	550, 560, 562, 1265, 1540, 1937, 2480, 2545, 3050
AsuII	TTCGAA	2 cut(s)	1657, 2655
AvaII	GGWCC	3 cut(s)	838, 1622, 3029
BalI	TGGCCA	1 cut(s)	1725
BarI	GAAGNNNNNNTAC	2 cut(s)	165, 197
BbsI	GAAGAC	3 cut(s)	1142, 2762, 3290
BbvI	GCAGC	6 cut(s)	199, 1451, 2004, 2490, 2601, 3011
BccI	CCATC	9 cut(s)	428, 586, 1139, 1312, 1715, 1942, 2813, 3059, 3134
BcgI	CGANNNNNNTGC	2 cut(s)	2432, 2466
BciT130I	CCWGG	3 cut(s)	265, 2466, 3212
BciVI	GTATCC	2 cut(s)	821, 3106
BclI	TGATCA	2 cut(s)	1204, 3046
BcnI	CCSGG	1 cut(s)	134
BcoDI	GTCTC	8 cut(s)	459, 980, 1547, 1740, 2388, 2390, 2412, 2744
BcuI	ACTAGT	1 cut(s)	178
BfaI	CTAG	8 cut(s)	179, 1883, 1970, 2055, 2297, 2319, 2766, 3245
BfmI	CTRYAG	3 cut(s)	805, 2441, 2881
BfoI	RGCGCY	1 cut(s)	3169
BfrI	CTTAAG	1 cut(s)	2623
BfuAI	ACCTGC	1 cut(s)	317
BfuI	GTATCC	2 cut(s)	821, 3106
BglII	AGATCT	2 cut(s)	1487, 1972
BisI	GCNGC	7 cut(s)	213, 598, 1465, 2018, 2504, 2615, 3000
BlsI	GCNGC	7 cut(s)	214, 599, 1466, 2019, 2505, 2616, 3001
BmcAI	AGTACT	2 cut(s)	1191, 3194
Bme1390I	CCNGG	4 cut(s)	134, 265, 2466, 3212
Bme18I	GGWCC	3 cut(s)	838, 1622, 3029
BmgT120I	GGNCC	4 cut(s)	838, 1336, 1622, 3029
BmiI	GGNNCC	3 cut(s)	601, 2982, 3030
BmrFI	CCNGG	4 cut(s)	134, 265, 2466, 3212
BmrI	ACTGGG	1 cut(s)	2865
BmsI	GCATC	8 cut(s)	139, 199, 321, 968, 1089, 1545, 2012, 2856
BmuI	ACTGGG	1 cut(s)	2865
BoxI	GACNNNNGTC	1 cut(s)	2231
BpiI	GAAGAC	3 cut(s)	1142, 2762, 3290
BpmI	CTGGAG	3 cut(s)	2414, 2627, 3314
Bpu10I	CCTNAGC	1 cut(s)	3252
Bpu14I	TTCGAA	2 cut(s)	1657, 2655
BpuEI	CTTGAG	4 cut(s)	100, 843, 1912, 2828
BpuMI	CCSGG	1 cut(s)	134
Bsa29I	ATCGAT	1 cut(s)	334
BsaBI	GATNNNNATC	1 cut(s)	2108
BsaI	GGTCTC	3 cut(s)	459, 1740, 2388
BsaJI	CCNNGG	4 cut(s)	46, 133, 2638, 2680
BsaWI	WCCGGW	3 cut(s)	602, 962, 1624
BsaXI	ACNNNNNCTCC	6 cut(s)	262, 267, 292, 297, 1844, 1874
Bsc4I	CCNNNNNNNGG	2 cut(s)	915, 1675
Bse1I	ACTGG	5 cut(s)	540, 1482, 2610, 2871, 3032
Bse3DI	GCAATG	1 cut(s)	3287
Bse8I	GATNNNNATC	1 cut(s)	2108
BseAI	TCCGGA	2 cut(s)	602, 962
BseBI	CCWGG	3 cut(s)	265, 2466, 3212
BseCI	ATCGAT	1 cut(s)	334
BseDI	CCNNGG	4 cut(s)	46, 133, 2638, 2680
BseGI	GGATG	7 cut(s)	235, 597, 712, 790, 959, 2871, 3070
BseJI	GATNNNNATC	1 cut(s)	2108
BseLI	CCNNNNNNNGG	2 cut(s)	915, 1675
BseMI	GCAATG	1 cut(s)	3287
BseMII	CTCAG	5 cut(s)	377, 1892, 2144, 2166, 3243
BseNI	ACTGG	5 cut(s)	540, 1482, 2610, 2871, 3032
BseRI	GAGGAG	4 cut(s)	283, 288, 1601, 2916
BseXI	GCAGC	6 cut(s)	199, 1451, 2004, 2490, 2601, 3011
BsgI	GTGCAG	1 cut(s)	2200
Bsh1236I	CGCG	2 cut(s)	2961, 3008
Bsh1285I	CGRYCG	1 cut(s)	2644
BshFI	GGCC	2 cut(s)	1337, 1725
BshVI	ATCGAT	1 cut(s)	334
BsiEI	CGRYCG	1 cut(s)	2644
BsiSI	CCGG	5 cut(s)	133, 603, 916, 963, 1625
BslFI	GGGAC	2 cut(s)	1574, 2995
BslI	CCNNNNNNNGG	2 cut(s)	915, 1675
BsmAI	GTCTC	8 cut(s)	459, 980, 1547, 1740, 2388, 2390, 2412, 2744
BsmBI	CGTCTC	2 cut(s)	980, 1547
BsmFI	GGGAC	2 cut(s)	1574, 2995
BsmI	GAATGC	2 cut(s)	871, 2647
BsnI	GGCC	2 cut(s)	1337, 1725
Bso31I	GGTCTC	3 cut(s)	459, 1740, 2388
Bsp119I	TTCGAA	2 cut(s)	1657, 2655
Bsp13I	TCCGGA	2 cut(s)	602, 962
Bsp1407I	TGTACA	1 cut(s)	1105
Bsp19I	CCATGG	1 cut(s)	2680
BspACI	CCGC	3 cut(s)	597, 1558, 1978
BspANI	GGCC	2 cut(s)	1337, 1725
BspCNI	CTCAG	5 cut(s)	378, 1893, 2145, 2167, 3244
BspDI	ATCGAT	1 cut(s)	334
BspEI	TCCGGA	2 cut(s)	602, 962
BspFNI	CGCG	2 cut(s)	2961, 3008
BspHI	TCATGA	1 cut(s)	1354
BspLI	GGNNCC	3 cut(s)	601, 2982, 3030
BspMAI	CTGCAG	2 cut(s)	2445, 2885
BspMI	ACCTGC	1 cut(s)	317
BspPI	GGATC	4 cut(s)	44, 124, 1359, 3270
BspT104I	TTCGAA	2 cut(s)	1657, 2655
BspTI	CTTAAG	1 cut(s)	2623
BspTNI	GGTCTC	3 cut(s)	459, 1740, 2388
BsrDI	GCAATG	1 cut(s)	3287
BsrGI	TGTACA	1 cut(s)	1105
BsrI	ACTGG	5 cut(s)	540, 1482, 2610, 2871, 3032
BssECI	CCNNGG	4 cut(s)	46, 133, 2638, 2680
BssT1I	CCWWGG	1 cut(s)	2680
Bst2UI	CCWGG	3 cut(s)	265, 2466, 3212
Bst4CI	ACNGT	8 cut(s)	22, 283, 572, 1020, 1189, 2199, 2422, 3061
Bst6I	CTCTTC	3 cut(s)	711, 1073, 1711
BstAFI	CTTAAG	1 cut(s)	2623
BstAUI	TGTACA	1 cut(s)	1105
BstBI	TTCGAA	2 cut(s)	1657, 2655
BstC8I	GCNNGC	6 cut(s)	69, 108, 957, 1143, 1571, 3004
BstDEI	CTNAG	8 cut(s)	386, 1154, 1193, 1820, 1901, 2153, 2175, 3252
BstDSI	CCRYGG	1 cut(s)	2680
BstF5I	GGATG	7 cut(s)	235, 597, 712, 790, 959, 2871, 3070
BstFNI	CGCG	2 cut(s)	2961, 3008
BstH2I	RGCGCY	1 cut(s)	3169
BstHHI	GCGC	5 cut(s)	112, 2619, 2784, 3008, 3168
BstMAI	GTCTC	8 cut(s)	459, 980, 1547, 1740, 2388, 2390, 2412, 2744
BstMCI	CGRYCG	1 cut(s)	2644
BstMWI	GCNNNNNNNGC	5 cut(s)	118, 956, 2155, 2539, 3005
BstNI	CCWGG	3 cut(s)	265, 2466, 3212
BstNSI	RCATGY	3 cut(s)	2347, 2930, 3242
BstPAI	GACNNNNGTC	1 cut(s)	2231
BstSCI	CCNGG	4 cut(s)	132, 263, 2464, 3210
BstSFI	CTRYAG	3 cut(s)	805, 2441, 2881
BstUI	CGCG	2 cut(s)	2961, 3008
BstV1I	GCAGC	6 cut(s)	199, 1451, 2004, 2490, 2601, 3011
BstV2I	GAAGAC	3 cut(s)	1142, 2762, 3290
BstX2I	RGATCY	3 cut(s)	1487, 1972, 3262
BstYI	RGATCY	3 cut(s)	1487, 1972, 3262
Bsu15I	ATCGAT	1 cut(s)	334
BsuI	GTATCC	2 cut(s)	821, 3106
BsuRI	GGCC	2 cut(s)	1337, 1725
BsuTUI	ATCGAT	1 cut(s)	334
BtgI	CCRYGG	1 cut(s)	2680
BtsCI	GGATG	7 cut(s)	235, 597, 712, 790, 959, 2871, 3070
BtsI	GCAGTG	1 cut(s)	2188
BtsIMutI	CAGTG	5 cut(s)	904, 1141, 1440, 1640, 2188
BveI	ACCTGC	1 cut(s)	317
Cac8I	GCNNGC	6 cut(s)	69, 108, 957, 1143, 1571, 3004
CciI	TCATGA	1 cut(s)	1354
CfoI	GCGC	5 cut(s)	112, 2619, 2784, 3008, 3168
Cfr13I	GGNCC	4 cut(s)	838, 1336, 1622, 3029
ClaI	ATCGAT	1 cut(s)	334
CseI	GACGC	4 cut(s)	336, 641, 2572, 2997
CsiI	ACCWGGT	1 cut(s)	2464
Csp6I	GTAC	9 cut(s)	182, 279, 533, 1106, 1190, 1848, 1917, 1955, 3193
CviAII	CATG	7 cut(s)	1355, 1547, 2344, 2681, 2761, 2927, 3239
CviQI	GTAC	9 cut(s)	182, 279, 533, 1106, 1190, 1848, 1917, 1955, 3193
DdeI	CTNAG	8 cut(s)	386, 1154, 1193, 1820, 1901, 2153, 2175, 3252
DraI	TTTAAA	1 cut(s)	2371
DrdI	GACNNNNNNGTC	1 cut(s)	2404
DseDI	GACNNNNNNGTC	1 cut(s)	2404
EaeI	YGGCCR	1 cut(s)	1723
Eam1104I	CTCTTC	3 cut(s)	711, 1073, 1711
EarI	CTCTTC	3 cut(s)	711, 1073, 1711
Eco130I	CCWWGG	1 cut(s)	2680
Eco31I	GGTCTC	3 cut(s)	459, 1740, 2388
Eco32I	GATATC	1 cut(s)	2352
Eco47I	GGWCC	3 cut(s)	838, 1622, 3029
Eco47III	AGCGCT	1 cut(s)	3167
Eco57I	CTGAAG	8 cut(s)	27, 51, 1928, 2309, 2357, 2603, 2756, 2810
EcoRII	CCWGG	3 cut(s)	263, 2464, 3210
EcoRV	GATATC	1 cut(s)	2352
EcoT14I	CCWWGG	1 cut(s)	2680
ErhI	CCWWGG	1 cut(s)	2680
Esp3I	CGTCTC	2 cut(s)	980, 1547
FaeI	CATG	7 cut(s)	1358, 1550, 2347, 2684, 2764, 2930, 3242
FalI	AAGNNNNNCTT	4 cut(s)	463, 495, 3182, 3214
FaqI	GGGAC	2 cut(s)	1574, 2995
FatI	CATG	7 cut(s)	1354, 1546, 2343, 2680, 2760, 2926, 3238
FauI	CCCGC	2 cut(s)	1551, 1971
FauNDI	CATATG	3 cut(s)	851, 1037, 1459
FbaI	TGATCA	2 cut(s)	1204, 3046
FblI	GTMKAC	1 cut(s)	1159
Fnu4HI	GCNGC	7 cut(s)	213, 598, 1465, 2018, 2504, 2615, 3000
FokI	GGATG	7 cut(s)	242, 604, 719, 797, 946, 2878, 3077
Fsp4HI	GCNGC	7 cut(s)	213, 598, 1465, 2018, 2504, 2615, 3000
FspBI	CTAG	8 cut(s)	179, 1883, 1970, 2055, 2297, 2319, 2766, 3245
FspI	TGCGCA	3 cut(s)	111, 2618, 2783
GlaI	GCGC	5 cut(s)	111, 2618, 2783, 3007, 3167
GluI	GCNGC	7 cut(s)	213, 598, 1465, 2018, 2504, 2615, 3000
GsuI	CTGGAG	3 cut(s)	2414, 2627, 3314
HaeII	RGCGCY	1 cut(s)	3169
HaeIII	GGCC	2 cut(s)	1337, 1725
HapII	CCGG	5 cut(s)	133, 603, 916, 963, 1625
HgaI	GACGC	4 cut(s)	336, 641, 2572, 2997
HhaI	GCGC	5 cut(s)	112, 2619, 2784, 3008, 3168
Hin1II	CATG	7 cut(s)	1358, 1550, 2347, 2684, 2764, 2930, 3242
Hin6I	GCGC	5 cut(s)	110, 2617, 2782, 3006, 3166
HinP1I	GCGC	5 cut(s)	110, 2617, 2782, 3006, 3166
HincII	GTYRAC	2 cut(s)	2562, 2590
HindII	GTYRAC	2 cut(s)	2562, 2590
HindIII	AAGCTT	1 cut(s)	1991
HpaII	CCGG	5 cut(s)	133, 603, 916, 963, 1625
HphI	GGTGA	9 cut(s)	550, 560, 562, 1265, 1540, 1937, 2480, 2545, 3050
Hpy166II	GTNNAC	4 cut(s)	1160, 1888, 2562, 2590
Hpy8I	GTNNAC	4 cut(s)	1160, 1888, 2562, 2590
HpyCH4III	ACNGT	8 cut(s)	22, 283, 572, 1020, 1189, 2199, 2422, 3061
HpyCH4IV	ACGT	2 cut(s)	1535, 2228
HpyF10VI	GCNNNNNNNGC	5 cut(s)	118, 956, 2155, 2539, 3005
HpyF3I	CTNAG	8 cut(s)	386, 1154, 1193, 1820, 1901, 2153, 2175, 3252
HpySE526I	ACGT	2 cut(s)	1535, 2228
Hsp92II	CATG	7 cut(s)	1358, 1550, 2347, 2684, 2764, 2930, 3242
HspAI	GCGC	5 cut(s)	110, 2617, 2782, 3006, 3166
Kpn2I	TCCGGA	2 cut(s)	602, 962
Ksp22I	TGATCA	2 cut(s)	1204, 3046
LmnI	GCTCC	2 cut(s)	605, 2980
Lsp1109I	GCAGC	6 cut(s)	199, 1451, 2004, 2490, 2601, 3011
LweI	GCATC	8 cut(s)	139, 199, 321, 968, 1089, 1545, 2012, 2856
MabI	ACCWGGT	1 cut(s)	2464
MaeI	CTAG	8 cut(s)	179, 1883, 1970, 2055, 2297, 2319, 2766, 3245
MaeII	ACGT	2 cut(s)	1535, 2228
MaeIII	GTNAC	9 cut(s)	16, 566, 1366, 1468, 1860, 1925, 2072, 3022, 3038
MfeI	CAATTG	1 cut(s)	2856
MflI	RGATCY	3 cut(s)	1487, 1972, 3262
MlsI	TGGCCA	1 cut(s)	1725
MluNI	TGGCCA	1 cut(s)	1725
MlyI	GAGTC	6 cut(s)	574, 850, 1833, 1912, 3035, 3145
MmeI	TCCRAC	2 cut(s)	838, 2307
Mox20I	TGGCCA	1 cut(s)	1725
MroI	TCCGGA	2 cut(s)	602, 962
MroXI	GAANNNNTTC	2 cut(s)	1535, 3240
MscI	TGGCCA	1 cut(s)	1725
MslI	CAYNNNNRTG	1 cut(s)	1136
Msp20I	TGGCCA	1 cut(s)	1725
MspCI	CTTAAG	1 cut(s)	2623
MspI	CCGG	5 cut(s)	133, 603, 916, 963, 1625
MspR9I	CCNGG	4 cut(s)	134, 265, 2466, 3212
MunI	CAATTG	1 cut(s)	2856
Mva1269I	GAATGC	2 cut(s)	871, 2647
MvaI	CCWGG	3 cut(s)	265, 2466, 3212
MvnI	CGCG	2 cut(s)	2961, 3008
MwoI	GCNNNNNNNGC	5 cut(s)	118, 956, 2155, 2539, 3005
NciI	CCSGG	1 cut(s)	134
NcoI	CCATGG	1 cut(s)	2680
NdeI	CATATG	3 cut(s)	851, 1037, 1459
NlaIII	CATG	7 cut(s)	1358, 1550, 2347, 2684, 2764, 2930, 3242
NlaIV	GGNNCC	3 cut(s)	601, 2982, 3030
NmuCI	GTSAC	3 cut(s)	566, 1925, 3038
NsbI	TGCGCA	3 cut(s)	111, 2618, 2783
NspI	RCATGY	3 cut(s)	2347, 2930, 3242
NspV	TTCGAA	2 cut(s)	1657, 2655
PacI	TTAATTAA	1 cut(s)	729
PagI	TCATGA	1 cut(s)	1354
PciI	ACATGT	3 cut(s)	2343, 2926, 3238
PctI	GAATGC	2 cut(s)	871, 2647
PdmI	GAANNNNTTC	2 cut(s)	1535, 3240
PfeI	GAWTC	6 cut(s)	239, 888, 1495, 1879, 2657, 2877
PfoI	TCCNGGA	2 cut(s)	263, 3210
PkrI	GCNGC	7 cut(s)	214, 599, 1466, 2019, 2505, 2616, 3001
PleI	GAGTC	6 cut(s)	573, 850, 1832, 1911, 3035, 3145
PpsI	GAGTC	6 cut(s)	573, 850, 1832, 1911, 3035, 3145
PscI	ACATGT	3 cut(s)	2343, 2926, 3238
PshAI	GACNNNNGTC	1 cut(s)	2231
PshBI	ATTAAT	1 cut(s)	2042
PsiI	TTATAA	3 cut(s)	408, 1071, 2942
Psp1406I	AACGTT	1 cut(s)	1535
Psp6I	CCWGG	3 cut(s)	263, 2464, 3210
PspGI	CCWGG	3 cut(s)	263, 2464, 3210
PspN4I	GGNNCC	3 cut(s)	601, 2982, 3030
PspPI	GGNCC	4 cut(s)	838, 1336, 1622, 3029
PstI	CTGCAG	2 cut(s)	2445, 2885
PsuI	RGATCY	3 cut(s)	1487, 1972, 3262
RsaI	GTAC	9 cut(s)	183, 280, 534, 1107, 1191, 1849, 1918, 1956, 3194
RsaNI	GTAC	9 cut(s)	182, 279, 533, 1106, 1190, 1848, 1917, 1955, 3193
RseI	CAYNNNNRTG	1 cut(s)	1136
SatI	GCNGC	7 cut(s)	213, 598, 1465, 2018, 2504, 2615, 3000
Sau96I	GGNCC	4 cut(s)	838, 1336, 1622, 3029
ScaI	AGTACT	2 cut(s)	1191, 3194
SchI	GAGTC	6 cut(s)	574, 850, 1833, 1912, 3035, 3145
ScrFI	CCNGG	4 cut(s)	134, 265, 2466, 3212
SexAI	ACCWGGT	1 cut(s)	2464
SfaNI	GCATC	8 cut(s)	139, 199, 321, 968, 1089, 1545, 2012, 2856
SfcI	CTRYAG	3 cut(s)	805, 2441, 2881
SfuI	TTCGAA	2 cut(s)	1657, 2655
SinI	GGWCC	3 cut(s)	838, 1622, 3029
SmiMI	CAYNNNNRTG	1 cut(s)	1136
SmlI	CTYRAG	5 cut(s)	79, 858, 1891, 2623, 2843
SmoI	CTYRAG	5 cut(s)	79, 858, 1891, 2623, 2843
SpeI	ACTAGT	1 cut(s)	178
SsiI	CCGC	3 cut(s)	597, 1558, 1978
SspI	AATATT	2 cut(s)	2458, 2953
SspMI	CTAG	8 cut(s)	179, 1883, 1970, 2055, 2297, 2319, 2766, 3245
StyD4I	CCNGG	4 cut(s)	132, 263, 2464, 3210
StyI	CCWWGG	1 cut(s)	2680
TaaI	ACNGT	8 cut(s)	22, 283, 572, 1020, 1189, 2199, 2422, 3061
TaiI	ACGT	2 cut(s)	1538, 2231
TaqI	TCGA	7 cut(s)	334, 875, 1271, 1657, 1764, 2655, 3304
TaqII	GACCGA	3 cut(s)	483, 2370, 2630
TatI	WGTACW	5 cut(s)	532, 1105, 1189, 1916, 3192
TauI	GCSGC	1 cut(s)	600
TfiI	GAWTC	6 cut(s)	239, 888, 1495, 1879, 2657, 2877
TscAI	CASTG	5 cut(s)	904, 1141, 1440, 1647, 2188
TseFI	GTSAC	3 cut(s)	566, 1925, 3038
TseI	GCWGC	6 cut(s)	212, 1464, 2017, 2503, 2614, 2999
Tsp45I	GTSAC	3 cut(s)	566, 1925, 3038
TspDTI	ATGAA	7 cut(s)	46, 186, 336, 657, 791, 801, 3160
TspGWI	ACGGA	2 cut(s)	1529, 1865
TspRI	CASTG	5 cut(s)	904, 1141, 1440, 1647, 2188
Vha464I	CTTAAG	1 cut(s)	2623
VpaK11BI	GGWCC	3 cut(s)	838, 1622, 3029
VspI	ATTAAT	1 cut(s)	2042
XapI	RAATTY	5 cut(s)	74, 765, 1757, 2140, 2702
XbaI	TCTAGA	1 cut(s)	1969
XceI	RCATGY	3 cut(s)	2347, 2930, 3242
XmiI	GTMKAC	1 cut(s)	1159
XmnI	GAANNNNTTC	2 cut(s)	1535, 3240
XspI	CTAG	8 cut(s)	179, 1883, 1970, 2055, 2297, 2319, 2766, 3245
ZrmI	AGTACT	2 cut(s)	1191, 3194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.