Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000069

Physical Location & Seq

Genomic Coordinates Reverse (-)

18542440 .. 18554810

Gene Structure 12371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00298720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2766 bp

ATGGCTGAAGCTGTCGTTTCAATGGTGATCCATGGGCTCAGGCCGCTCGGAAGCTTGATGATTCAGCAAGCAATGTTCTTCAAAGGAGTCGGCGATAAAGTTGAGCTTGCACAAACCGAGCTACTCTTGATGCAAGGCTTCCTGAAAGATGCAGATGCACGACAAGAAAATGAAGAAGTGGTACGCTTATGGGTTAATATTATTAGAGAAGCTGCTTATGATTTGGAGGATGCCATTGAATCTTTTGTCTTGAAAGTAGCTTTGAAGAGGGAAGCAAGTGTGAAGGTAGTTCTCAAAAGGTTTGCTTGTTTCTTGTGCAAAGGAGTGGATCGTTACAAGATCGGATTGGAAATAGAGAGCATTACGACCAAGCTTTCTAAGCTCAGATCGGATATGCAAAGCTATGACATAAAGCAAGAAAAGGGGAATGAAGGTGCTACTTCCTCAATTGGGCAGCGAGAACGCAGGCTAACCTATCCTCATGTTATTGATCATGATGTTGTTGGGTTAGGGGACGACACAGAGATGTTAGCTACAAATTTGGTGGAAGAAAAAGGCCCTCAAGTGGTAACTATTTGGGGCATGGGCGGCTCGGGAAAGACCACTCTAGCAAAACAAATTTACAATCATAAGAAAGTCAAGTCTCATTTTGATTGTTTCGCATGGGTGTGTATATCGCAACACTGTGACGGTATGGCAGTAATGAAAGAAATTTTCATGAAACTTAACGGTGTGTCCGGAATTGCAGAACTGAGGAATGACGAAGTAGCAGAGAAGCTGTGCAATTTCCAACGACACAGAAAATGTTTGGTGGTGCTTGATGATATTTGGACTCTTGATGCATGGAACTCTTTTAAAGGTGGATTTTCAGTGAATGAGGAAACTGAGAGCCGCATATTACTGACCACCCGCAACAGAGAAGTAGCTTCACTTGCAAGGGGAAATAGCTTACTCTACGAATCTCAGGCACTGAGTGCAGATGAAAGCTGGAATTTGTTTGGGAGGATAGCATTCCTTGAAATGGATGATACAAATTCAGACTCTCAAATTTATTCAAAGAAAGAAGAACTGGGAAAGAATATGCTTCAACGTTGTGCAGGACTGGCTAGAAAAGACACAATTGATGAGTGGGAAACTGTGCATAAGAATGTTAATGTATATATAAGGAGAGGCACAGACCTTGAACGAGAATACAAAGGTCAAGAATATGAAGGTGCTTCATGGGTCTTGGCACTCAGTTATGACAACTTACCATATCGCTTAAAGCTATGCTTTTTGTACTTGGCAAATTTTCCTGAAGACTATGAGATACGGGTGAAAAGACTGGCTCAGTTATGGATGGCAGAAGGTTTTATATCCACGACGTCAACAGAAATGATGGAAGATGTATCATATAGTTGCTTGAGTGAATTGGTGGAAAGGTGTATGGTTCAAGTTGTGGACATTGGTTTATCCGGGAAAATTAAAACTTGTCGTCTTCATGATCTTATGCGAGACTTGTGCTTGTTAAAAGCCGAAGAGGAGAACTTTTTACATGTCGTCAGTTTTAATACAGGGACGAGAAACAAGACAACACAAGTCGGCAGAGTTCGAAGAGTGGCAAATGTGAACAAAATGGTTGATCAATTAGTTCCCACTACAAGAGGTGCTGCTCACCTTAGGTCACTGTTACAATTCGGCCCACAAAACTCTGATGGAATCTGGAATAACAAAGTCAACCGGTCTGTATTCAATGACTTCAAATTACTTAGAGTTTTGAAGGTGGAAGATATGTATAATCACTGTCTCATAGAGTTACCGAGCACAATTGGAAATCTGGTCCACTTGCGGTTTTTAAGTCTAAAGAATAGTGCAGTAGAAAACTTGCCATCGTCTGTCGCTAACTTGGTGTGTTTGCAGACTTTAGATTTACGTTGTTATTGCCATCCTAATACGAAAGTGATGAACGTCCCAAATGTGTTTAAGAAGATGGAACAATTGAGGCATTTATATCTACCCCGGTGCTACATGGTACGTGTGGAGCTCTCATTACCTACAGCTTGCAACCTGCAGACGCTAGTCAATGTTAAATGCGAAAACTGTGATTTTAATGCCCTTGTTGAATTATACAATCTTCGGAGACTATCCGTCCGGGATTGGCCACCGTCAGGACACTGGAAAAAACTGGAGGAATTATTGAAATCGAGAAGTAGTATCACATTCCACCATCTTCGCTCTCTATCTCTGGAACTGTATGGTCATGATTCAATATTTGATCAATCGGGGTTTCGTTTCATATACAAGCTGCAACTGAAGGGGCCCTCACTCAAGGAGTTAGCACAGAACCTCCTGTCCTTTCCGAACCTCATCAAGATAAAGCTGTCTTCTACTCGACTGAAGGGAGACCAGATAGAAAGAATACTTGAGAAGCTGCCACACTTGAGAGTGCTTTACCTCGAAGATGGTGTTTTCTCCAGCCTTCCTTCAAACACGCTGGTTTGCAGCAATGGAGGATTTCCAAATCTTGAATTTCTTTTCCTCCGAAGTTTGCGAGAATTGAAAGAGTGGAGGGTGGAGGAAGGAGCCATGCCTCGTCTCCGCAGATTGTGCATTGAAGACTGCAAATTGAGGGCAGTTCCAGATGGGCTTCAATACGTTGCTACCCTCAAGGAGTTAACCGTCAAGAATATGCCATGGGAATTCTGTAGTAGGCTTCGGGAAGACAGGAAGAGACTTGGAGATGCGAGAGGACTTGGGCATGTCTTAAGTAATTGTGGGCTCTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0002230 GO:0002238 GO:0002239 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009615 GO:0009620 GO:0009626 GO:0009628 GO:0009637 GO:0009642 GO:0009646 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0012501 GO:0014070 GO:0016020 GO:0023052 GO:0030054 GO:0031347 GO:0032101 GO:0032870 GO:0033554 GO:0034050 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0043207 GO:0043900 GO:0044464 GO:0045087 GO:0046677 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071944 GO:0080134 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

921

Amino Acids

105.38

Weight (kDa)

8.39

Isoelectric Point (pI)

41.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	14 - 93	3.5e-20	Rx N-terminal domain
NB-ARC	PF00931	174 - 338	8e-41	NB-ARC domain
WHD_DRP	PF23559	431 - 501	1.2e-21	Disease resistance protein Winged helix domain
LRR_14	PF23598	575 - 887	3.6e-32	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G50180 AT1G53350 AT1G58390 AT1G58390 AT1G58400 AT1G58400 AT1G58400 AT1G58410 AT1G58410 AT1G58410 AT1G58410 AT1G58602 AT1G58602 AT1G58807 AT1G58807 AT1G58848 AT1G58848 AT1G59124 AT1G59124 AT1G59218 AT1G59218 AT1G59218 AT1G59620 AT1G59780 AT1G59780 AT5G35450 AT5G35450 AT5G43470 AT5G43470 AT5G43470 AT5G43470 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620
fragaria_vesca	FvH4_4g04072 FvH4_4g22931 FvH4_4g22931 FvH4_4g22940 FvH4_6g49940 FvH4_6g49940 FvH4_7g08100 FvH4_7g08870 FvH4_7g08870 FvH4_7g09280 FvH4_7g09290 FvH4_7g15190 FvH4_7g15200 FvH4_7g15240 FvH4_7g15240 FvH4_7g33440
malus_domestica	MD00G1174600.v1.1 MD01G1113700.v1.1 MD03G1071300.v1.1 MD04G1041500.v1.1 MD04G1238000.v1.1 MD07G1029000.v1.1 MD07G1092100.v1.1 MD07G1092300.v1.1 MD07G1092600.v1.1 MD12G1256300.v1.1 MD13G1128200.v1.1 MD13G1128400.v1.1 MD17G1268000.v1.1
prunus_persica	Prupe.1G041300_v2.0.a1 Prupe.1G041300_v2.0.a1 Prupe.1G042900_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043600_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G046700_v2.0.a1 Prupe.1G047700_v2.0.a1 Prupe.1G047900_v2.0.a1 Prupe.1G048000_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G049900_v2.0.a1 Prupe.1G051500_v2.0.a1 Prupe.1G051800_v2.0.a1 Prupe.1G051900_v2.0.a1 Prupe.1G052200_v2.0.a1 Prupe.1G194900_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117300_v2.0.a1 Prupe.2G117400_v2.0.a1 Prupe.2G117500_v2.0.a1 Prupe.2G117700_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G119900_v2.0.a1
pyrus_communis	pycom03g05750 pycom04g21110 pycom07g07530 pycom07g07590 pycom13g11110 pycom13g11140 pycom13g11160 pycom13g11170 pycom17g26680
rosa_chinensis	RchiOBHm_Chr1g0341231 RchiOBHm_Chr1g0344091 RchiOBHm_Chr1g0344161 RchiOBHm_Chr1g0345001 RchiOBHm_Chr1g0345351 RchiOBHm_Chr1g0345371 RchiOBHm_Chr1g0345391 RchiOBHm_Chr1g0345531 RchiOBHm_Chr1g0345551 RchiOBHm_Chr1g0345571 RchiOBHm_Chr1g0345581 RchiOBHm_Chr1g0345661 RchiOBHm_Chr1g0345691 RchiOBHm_Chr1g0345761 RchiOBHm_Chr1g0345791 RchiOBHm_Chr1g0345821 RchiOBHm_Chr1g0345911 RchiOBHm_Chr1g0345941 RchiOBHm_Chr1g0357611 RchiOBHm_Chr1g0357911 RchiOBHm_Chr1g0357921 RchiOBHm_Chr1g0357931 RchiOBHm_Chr1g0357971 RchiOBHm_Chr1g0358121 RchiOBHm_Chr1g0383491 RchiOBHm_Chr1g0383511 RchiOBHm_Chr1g0383521 RchiOBHm_Chr3g0480581 RchiOBHm_Chr4g0394341 RchiOBHm_Chr4g0394361 RchiOBHm_Chr4g0394411 RchiOBHm_Chr4g0394441 RchiOBHm_Chr4g0407681 RchiOBHm_Chr4g0429191 RchiOBHm_Chr4g0429201 RchiOBHm_Chr4g0429211 RchiOBHm_Chr4g0429221 RchiOBHm_Chr6g0265091
rosa_laevigata	RLG00000007088 RLG00000008700 RLG00000009190 RLG00000009702 RLG00000014210 RLG00000028829 RLG00000028833 RLG00000028837 RLG00000028838 RLG00000028921 RLG00000028926
rosa_multiflora	Rmu_co8366955.1_g000001 Rmu_co8394205.1_g000001 Rmu_sc0000019.1_g000001 Rmu_sc0000054.1_g000031 Rmu_sc0000054.1_g000033 Rmu_sc0000200.1_g000002 Rmu_sc0000200.1_g000007 Rmu_sc0000200.1_g000018 Rmu_sc0000200.1_g000020 Rmu_sc0000200.1_g000021 Rmu_sc0000251.1_g000012 Rmu_sc0000251.1_g000015 Rmu_sc0000251.1_g000028 Rmu_sc0000253.1_g000015 Rmu_sc0000255.1_g000045 Rmu_sc0000255.1_g000046 Rmu_sc0001292.1_g000013 Rmu_sc0001292.1_g000018 Rmu_sc0001292.1_g000028 Rmu_sc0001292.1_g000029 Rmu_sc0001349.1_g000006 Rmu_sc0001349.1_g000014 Rmu_sc0001582.1_g000006 Rmu_sc0001582.1_g000018 Rmu_sc0001582.1_g000020 Rmu_sc0001692.1_g000007 Rmu_sc0001692.1_g000024 Rmu_sc0001692.1_g000026 Rmu_sc0001692.1_g000029 Rmu_sc0001692.1_g000030 Rmu_sc0001835.1_g000006 Rmu_sc0001835.1_g000010 Rmu_sc0002071.1_g000005 Rmu_sc0002276.1_g000002 Rmu_sc0002276.1_g000009 Rmu_sc0002329.1_g000018 Rmu_sc0002329.1_g000023 Rmu_sc0002329.1_g000025 Rmu_sc0002523.1_g000005 Rmu_sc0003573.1_g000005 Rmu_sc0003573.1_g000006 Rmu_sc0004099.1_g000021 Rmu_sc0005812.1_g000009 Rmu_sc0006271.1_g000002 Rmu_sc0006287.1_g000038 Rmu_sc0006439.1_g000008 Rmu_sc0007456.1_g000004 Rmu_sc0007581.1_g000009 Rmu_sc0007849.1_g000014 Rmu_sc0008115.1_g000012 Rmu_sc0010521.1_g000004 Rmu_sc0012471.1_g000017 Rmu_sc0014762.1_g000001 Rmu_sc0015150.1_g000003 Rmu_sc0017221.1_g000001 Rmu_sc0017299.1_g000001 Rmu_sc0017299.1_g000002 Rmu_sc0021457.1_g000001 Rmu_sc0022067.1_g000001 Rmu_sc0033275.1_g000001 Rmu_ssc0000245.1_g000012 Rmu_ssc0000359.1_g000035 Rmu_ssc0000359.1_g000067 Rmu_ssc0000359.1_g000072 Rmu_ssc0000434.1_g000005 Rmu_ssc0000434.1_g000007
rosa_roxburghii	Rroxscaffold_4G00298420 Rroxscaffold_4G00298720 Rroxscaffold_4G00308990 Rroxscaffold_4G00309000 Rroxscaffold_4G00309010 Rroxscaffold_4G00309050 Rroxscaffold_4G00309070 Rroxscaffold_4G00309100 Rroxscaffold_4G00310030 Rroxscaffold_4G00310050 Rroxscaffold_4G00311880 Rroxscaffold_5G00339420 Rroxscaffold_5G00339450 Rroxscaffold_5G00344880 Rroxscaffold_5G00352270 Rroxscaffold_5G00362240 Rroxscaffold_5G00370840 Rroxscaffold_7G00202970
rosa_rugosa	Rorug01G0159100.1 Rorug01G0159200.1 Rorug01G0171700 Rorug01G0171900 Rorug01G0172000 Rorug01G0191700 Rorug01G0191800 Rorug01G0256900 Rorug01G0257000 Rorug01G0257100 Rorug03G0198000 Rorug03G0366300.1 Rorug03G0366400.1 Rorug03G0366500.1 Rorug04G0081200 Rorug04G0081200 Rorug04G0081200 Rorug04G0233700 Rorug04G0233800 Rorug04G0233800 Rorug06G0013300
rosa_samantha	Rh1CG138800 Rh1CG161300 Rh1CG173800 Rh1CG179800 Rh1CG180100 Rh1CG180500 Rh1CG180800 Rh1CG180900 Rh1CG194100 Rh1DG205100 Rh3AG236300 Rh4AG052000 Rh4AG052100 Rh4AG145900 Rh4AG289700 Rh4AG289800 Rh6AG136800 Rh6AG137300 Rh6BG133600 Rh6CG132000 Rh6CG134000 Rh6DG119300
rosa_wichuraiana	Rw0G003420 Rw1G015500 Rw1G016110 Rw1G016180 Rw1G016210 Rw1G016230 Rw1G016280 Rw1G016440 Rw1G016450 Rw1G016460 Rw1G016480 Rw1G017490 Rw1G024140 Rw1G024160 Rw3G022530 Rw4G004140 Rw4G004190 Rw4G011850 Rw6G011800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1367
Acc36I	ACCTGC	1 cut(s)	2055
AccBSI	CCGCTC	1 cut(s)	46
AccIII	TCCGGA	1 cut(s)	737
AciI	CCGC	6 cut(s)	44, 588, 892, 910, 1828, 2578
AclI	AACGTT	1 cut(s)	1090
AclWI	GGATC	2 cut(s)	22, 336
AcoI	YGGCCR	1 cut(s)	2138
AcsI	RAATTY	9 cut(s)	538, 618, 711, 991, 1033, 1047, 1288, 2507, 2678
AcuI	CTGAAG	4 cut(s)	27, 1317, 2312, 2396
AcyI	GRCGYC	1 cut(s)	1364
AdeI	CACNNNGTG	1 cut(s)	974
AfaI	GTAC	3 cut(s)	183, 1280, 2013
AfiI	CCNNNNNNNGG	4 cut(s)	450, 565, 1021, 2147
AflII	CTTAAG	1 cut(s)	2743
AflIII	ACRYGT	2 cut(s)	1534, 2014
AgeI	ACCGGT	1 cut(s)	1719
AhdI	GACNNNNNGTC	1 cut(s)	2126
AloI	GAACNNNNNNTCC	2 cut(s)	2315, 2347
Alw21I	GWGCWC	2 cut(s)	1805, 2025
Alw26I	GTCTC	7 cut(s)	648, 1488, 1790, 2113, 2376, 2579, 2704
AlwI	GGATC	2 cut(s)	22, 336
AlwNI	CAGNNNCTG	1 cut(s)	970
Ama87I	CYCGRG	1 cut(s)	592
Aor13HI	TCCGGA	1 cut(s)	737
AoxI	GGCC	5 cut(s)	41, 556, 1678, 2138, 2297
ApaI	GGGCCC	1 cut(s)	2301
ApeKI	GCWGC	6 cut(s)	212, 454, 1649, 2284, 2410, 2481
ApoI	RAATTY	9 cut(s)	538, 618, 711, 991, 1033, 1047, 1288, 2507, 2678
AsiGI	ACCGGT	1 cut(s)	1719
AspS9I	GGNCC	5 cut(s)	557, 1679, 1819, 2297, 2298
AsuC2I	CCSGG	3 cut(s)	1456, 1999, 2132
AsuHPI	GGTGA	3 cut(s)	37, 1327, 1646
AsuII	TTCGAA	1 cut(s)	1591
AvaI	CYCGRG	1 cut(s)	592
AvaII	GGWCC	1 cut(s)	1819
AxyI	CCTNAGG	1 cut(s)	1658
BaeGI	GKGCMC	1 cut(s)	2301
BalI	TGGCCA	1 cut(s)	2140
BanII	GRGCYC	4 cut(s)	39, 2025, 2301, 2760
BarI	GAAGNNNNNNTAC	2 cut(s)	165, 197
BauI	CACGAG	1 cut(s)	2761
BbsI	GAAGAC	5 cut(s)	1305, 1469, 2355, 2601, 2706
Bbv12I	GWGCWC	2 cut(s)	1805, 2025
BbvI	GCAGC	6 cut(s)	199, 466, 1636, 2271, 2397, 2493
BccI	CCATC	9 cut(s)	1333, 1372, 1688, 1876, 1932, 1963, 2214, 2435, 2615
BcgI	CGANNNNNNTGC	2 cut(s)	1482, 1516
BclI	TGATCA	3 cut(s)	490, 1621, 2254
BcnI	CCSGG	3 cut(s)	1456, 1999, 2132
BcoDI	GTCTC	7 cut(s)	648, 1488, 1790, 2113, 2376, 2579, 2704
BfaI	CTAG	3 cut(s)	608, 1107, 2057
BfmI	CTRYAG	3 cut(s)	2034, 2048, 2683
BfrI	CTTAAG	1 cut(s)	2743
BfuAI	ACCTGC	1 cut(s)	2055
BisI	GCNGC	9 cut(s)	44, 213, 455, 589, 892, 1650, 2285, 2411, 2482
BlsI	GCNGC	9 cut(s)	45, 214, 456, 590, 893, 1651, 2286, 2412, 2483
Bme1390I	CCNGG	3 cut(s)	1456, 1999, 2132
Bme18I	GGWCC	1 cut(s)	1819
BmeRI	GACNNNNNGTC	1 cut(s)	2126
BmeT110I	CYCGRG	1 cut(s)	592
BmgT120I	GGNCC	5 cut(s)	557, 1679, 1819, 2297, 2298
BmiI	GGNNCC	3 cut(s)	2298, 2299, 2563
BmrFI	CCNGG	3 cut(s)	1456, 1999, 2132
BmrI	ACTGGG	1 cut(s)	1079
BmsI	GCATC	6 cut(s)	120, 139, 145, 220, 829, 2710
BmuI	ACTGGG	1 cut(s)	1079
BoxI	GACNNNNGTC	1 cut(s)	2057
BpiI	GAAGAC	5 cut(s)	1305, 1469, 2355, 2601, 2706
BpmI	CTGGAG	2 cut(s)	2186, 2437
Bpu10I	CCTNAGC	1 cut(s)	38
Bpu14I	TTCGAA	1 cut(s)	1591
BpuEI	CTTGAG	6 cut(s)	546, 1423, 2291, 2423, 2440, 2630
BpuMI	CCSGG	3 cut(s)	1456, 1999, 2132
BsaAI	YACGTR	1 cut(s)	2015
BsaHI	GRCGYC	1 cut(s)	1364
BsaI	GGTCTC	1 cut(s)	2376
BsaJI	CCNNGG	3 cut(s)	31, 1997, 2672
BsaWI	WCCGGW	2 cut(s)	737, 1719
BsaXI	ACNNNNNCTCC	2 cut(s)	2310, 2340
Bsc4I	CCNNNNNNNGG	4 cut(s)	450, 565, 1021, 2147
Bse118I	RCCGGY	1 cut(s)	1719
Bse1I	ACTGG	5 cut(s)	1074, 1107, 1329, 2159, 2169
Bse21I	CCTNAGG	1 cut(s)	1658
Bse3DI	GCAATG	2 cut(s)	78, 2491
BseAI	TCCGGA	1 cut(s)	737
BseDI	CCNNGG	3 cut(s)	31, 1997, 2672
BseGI	GGATG	4 cut(s)	235, 1030, 1344, 1924
BseLI	CCNNNNNNNGG	4 cut(s)	450, 565, 1021, 2147
BseMI	GCAATG	2 cut(s)	78, 2491
BseMII	CTCAG	8 cut(s)	52, 397, 743, 876, 962, 977, 1249, 1343
BseNI	ACTGG	5 cut(s)	1074, 1107, 1329, 2159, 2169
BseRI	GAGGAG	1 cut(s)	1535
BseSI	GKGCMC	1 cut(s)	2301
BseXI	GCAGC	6 cut(s)	199, 466, 1636, 2271, 2397, 2493
BsgI	GTGCAG	3 cut(s)	996, 1116, 1872
BshFI	GGCC	5 cut(s)	43, 558, 1680, 2140, 2299
BshTI	ACCGGT	1 cut(s)	1719
BsiHKAI	GWGCWC	2 cut(s)	1805, 2025
BsiHKCI	CYCGRG	1 cut(s)	592
BsiSI	CCGG	5 cut(s)	738, 1455, 1720, 1999, 2131
BslFI	GGGAC	3 cut(s)	527, 1570, 1934
BslI	CCNNNNNNNGG	4 cut(s)	450, 565, 1021, 2147
BsmAI	GTCTC	7 cut(s)	648, 1488, 1790, 2113, 2376, 2579, 2704
BsmBI	CGTCTC	1 cut(s)	2579
BsmFI	GGGAC	3 cut(s)	527, 1570, 1934
BsmI	GAATGC	1 cut(s)	1010
BsnI	GGCC	5 cut(s)	43, 558, 1680, 2140, 2299
Bso31I	GGTCTC	1 cut(s)	2376
BsoBI	CYCGRG	1 cut(s)	592
Bsp119I	TTCGAA	1 cut(s)	1591
Bsp120I	GGGCCC	1 cut(s)	2297
Bsp1286I	GDGCHC	5 cut(s)	39, 1805, 2025, 2301, 2760
Bsp13I	TCCGGA	1 cut(s)	737
Bsp143I	GATC	8 cut(s)	27, 328, 339, 386, 490, 1483, 1621, 2254
Bsp19I	CCATGG	2 cut(s)	31, 2672
BspACI	CCGC	6 cut(s)	44, 588, 892, 910, 1828, 2578
BspANI	GGCC	5 cut(s)	43, 558, 1680, 2140, 2299
BspCNI	CTCAG	8 cut(s)	51, 396, 744, 877, 963, 976, 1248, 1342
BspEI	TCCGGA	1 cut(s)	737
BspHI	TCATGA	4 cut(s)	493, 717, 1480, 2239
BspLI	GGNNCC	3 cut(s)	2298, 2299, 2563
BspMAI	CTGCAG	1 cut(s)	2052
BspMI	ACCTGC	1 cut(s)	2055
BspPI	GGATC	2 cut(s)	22, 336
BspT104I	TTCGAA	1 cut(s)	1591
BspTI	CTTAAG	1 cut(s)	2743
BspTNI	GGTCTC	1 cut(s)	2376
BsrBI	CCGCTC	1 cut(s)	46
BsrDI	GCAATG	2 cut(s)	78, 2491
BsrFI	RCCGGY	1 cut(s)	1719
BsrI	ACTGG	5 cut(s)	1074, 1107, 1329, 2159, 2169
BssAI	RCCGGY	1 cut(s)	1719
BssECI	CCNNGG	3 cut(s)	31, 1997, 2672
BssMI	GATC	8 cut(s)	27, 328, 339, 386, 490, 1483, 1621, 2254
BssNI	GRCGYC	1 cut(s)	1364
BssSI	CACGAG	1 cut(s)	2761
BssT1I	CCWWGG	2 cut(s)	31, 2672
Bst2BI	CACGAG	1 cut(s)	2761
Bst6I	CTCTTC	4 cut(s)	260, 1512, 1588, 2702
BstACI	GRCGYC	1 cut(s)	1364
BstAFI	CTTAAG	1 cut(s)	2743
BstAPI	GCANNNNNTGC	2 cut(s)	974, 2586
BstBAI	YACGTR	1 cut(s)	2015
BstBI	TTCGAA	1 cut(s)	1591
BstC8I	GCNNGC	4 cut(s)	69, 108, 467, 2041
BstDSI	CCRYGG	2 cut(s)	31, 2672
BstF5I	GGATG	4 cut(s)	235, 1030, 1344, 1924
BstKTI	GATC	8 cut(s)	30, 331, 342, 389, 493, 1486, 1624, 2257
BstMAI	GTCTC	7 cut(s)	648, 1488, 1790, 2113, 2376, 2579, 2704
BstMBI	GATC	8 cut(s)	27, 328, 339, 386, 490, 1483, 1621, 2254
BstMWI	GCNNNNNNNGC	7 cut(s)	43, 379, 588, 932, 974, 1103, 2586
BstNSI	RCATGY	2 cut(s)	1538, 2741
BstPAI	GACNNNNGTC	1 cut(s)	2057
BstSCI	CCNGG	3 cut(s)	1454, 1997, 2130
BstSFI	CTRYAG	3 cut(s)	2034, 2048, 2683
BstSLI	GKGCMC	1 cut(s)	2301
BstV1I	GCAGC	6 cut(s)	199, 466, 1636, 2271, 2397, 2493
BstV2I	GAAGAC	5 cut(s)	1305, 1469, 2355, 2601, 2706
Bsu36I	CCTNAGG	1 cut(s)	1658
BsuRI	GGCC	5 cut(s)	43, 558, 1680, 2140, 2299
BtgI	CCRYGG	2 cut(s)	31, 2672
BtsCI	GGATG	4 cut(s)	235, 1030, 1344, 1924
BtsIMutI	CAGTG	6 cut(s)	682, 876, 968, 1664, 1780, 2152
BveI	ACCTGC	1 cut(s)	2055
Cac8I	GCNNGC	4 cut(s)	69, 108, 467, 2041
CaiI	CAGNNNCTG	1 cut(s)	970
CciI	TCATGA	4 cut(s)	493, 717, 1480, 2239
Cfr10I	RCCGGY	1 cut(s)	1719
Cfr13I	GGNCC	5 cut(s)	557, 1679, 1819, 2297, 2298
CseI	GACGC	1 cut(s)	2062
Csp6I	GTAC	3 cut(s)	182, 1279, 2012
CspAI	ACCGGT	1 cut(s)	1719
CspCI	CAANNNNNGTGG	2 cut(s)	525, 560
CviQI	GTAC	3 cut(s)	182, 1279, 2012
DpnI	GATC	8 cut(s)	29, 330, 341, 388, 492, 1485, 1623, 2256
DpnII	GATC	8 cut(s)	27, 328, 339, 386, 490, 1483, 1621, 2254
DraI	TTTAAA	1 cut(s)	856
DraIII	CACNNNGTG	1 cut(s)	974
DriI	GACNNNNNGTC	1 cut(s)	2126
EaeI	YGGCCR	1 cut(s)	2138
Eam1104I	CTCTTC	4 cut(s)	260, 1512, 1588, 2702
Eam1105I	GACNNNNNGTC	1 cut(s)	2126
EarI	CTCTTC	4 cut(s)	260, 1512, 1588, 2702
Ecl136II	GAGCTC	1 cut(s)	2023
Eco130I	CCWWGG	2 cut(s)	31, 2672
Eco24I	GRGCYC	4 cut(s)	39, 2025, 2301, 2760
Eco31I	GGTCTC	1 cut(s)	2376
Eco47I	GGWCC	1 cut(s)	1819
Eco53kI	GAGCTC	1 cut(s)	2023
Eco57I	CTGAAG	4 cut(s)	27, 1317, 2312, 2396
Eco81I	CCTNAGG	1 cut(s)	1658
Eco88I	CYCGRG	1 cut(s)	592
EcoICRI	GAGCTC	1 cut(s)	2023
EcoO109I	RGGNCCY	3 cut(s)	557, 2297, 2298
EcoRI	GAATTC	1 cut(s)	2678
EcoT14I	CCWWGG	2 cut(s)	31, 2672
EcoT22I	ATGCAT	1 cut(s)	844
EcoT38I	GRGCYC	4 cut(s)	39, 2025, 2301, 2760
ErhI	CCWWGG	2 cut(s)	31, 2672
Esp3I	CGTCTC	1 cut(s)	2579
FalI	AAGNNNNNCTT	6 cut(s)	90, 122, 289, 321, 1256, 1288
FaqI	GGGAC	3 cut(s)	527, 1570, 1934
FauI	CCCGC	1 cut(s)	917
FbaI	TGATCA	3 cut(s)	490, 1621, 2254
Fnu4HI	GCNGC	9 cut(s)	44, 213, 455, 589, 892, 1650, 2285, 2411, 2482
FokI	GGATG	4 cut(s)	242, 1037, 1351, 1911
FriOI	GRGCYC	4 cut(s)	39, 2025, 2301, 2760
Fsp4HI	GCNGC	9 cut(s)	44, 213, 455, 589, 892, 1650, 2285, 2411, 2482
FspBI	CTAG	3 cut(s)	608, 1107, 2057
GluI	GCNGC	9 cut(s)	44, 213, 455, 589, 892, 1650, 2285, 2411, 2482
GsuI	CTGGAG	2 cut(s)	2186, 2437
HaeIII	GGCC	5 cut(s)	43, 558, 1680, 2140, 2299
HapII	CCGG	5 cut(s)	738, 1455, 1720, 1999, 2131
HgaI	GACGC	1 cut(s)	2062
Hin1I	GRCGYC	1 cut(s)	1364
HincII	GTYRAC	3 cut(s)	1368, 1717, 2655
HindII	GTYRAC	3 cut(s)	1368, 1717, 2655
HindIII	AAGCTT	2 cut(s)	52, 371
HinfI	GANTC	8 cut(s)	61, 87, 239, 832, 959, 1040, 1698, 2243
HpaI	GTTAAC	1 cut(s)	2655
HpaII	CCGG	5 cut(s)	738, 1455, 1720, 1999, 2131
HphI	GGTGA	3 cut(s)	37, 1327, 1646
Hpy166II	GTNNAC	6 cut(s)	1368, 1441, 1609, 1717, 1822, 2655
Hpy188I	TCNGA	9 cut(s)	50, 344, 386, 391, 1039, 1693, 2118, 2340, 2522
Hpy8I	GTNNAC	6 cut(s)	1368, 1441, 1609, 1717, 1822, 2655
Hpy99I	CGWCG	1 cut(s)	1366
HpyCH4IV	ACGT	6 cut(s)	1090, 1364, 1912, 1947, 2014, 2634
HpyF10VI	GCNNNNNNNGC	7 cut(s)	43, 379, 588, 932, 974, 1103, 2586
HpySE526I	ACGT	6 cut(s)	1090, 1364, 1912, 1947, 2014, 2634
Hsp92I	GRCGYC	1 cut(s)	1364
Kpn2I	TCCGGA	1 cut(s)	737
Ksp22I	TGATCA	3 cut(s)	490, 1621, 2254
KspAI	GTTAAC	1 cut(s)	2655
Kzo9I	GATC	8 cut(s)	27, 328, 339, 386, 490, 1483, 1621, 2254
LmnI	GCTCC	2 cut(s)	2020, 2561
Lsp1109I	GCAGC	6 cut(s)	199, 466, 1636, 2271, 2397, 2493
LweI	GCATC	6 cut(s)	120, 139, 145, 220, 829, 2710
MaeI	CTAG	3 cut(s)	608, 1107, 2057
MaeII	ACGT	6 cut(s)	1090, 1364, 1912, 1947, 2014, 2634
MaeIII	GTNAC	6 cut(s)	332, 568, 686, 1662, 1668, 1794
MalI	GATC	8 cut(s)	29, 330, 341, 388, 492, 1485, 1623, 2256
MbiI	CCGCTC	1 cut(s)	46
MboI	GATC	8 cut(s)	27, 328, 339, 386, 490, 1483, 1621, 2254
MfeI	CAATTG	4 cut(s)	447, 1119, 1806, 1976
MhlI	GDGCHC	5 cut(s)	39, 1805, 2025, 2301, 2760
MlsI	TGGCCA	1 cut(s)	2140
MluNI	TGGCCA	1 cut(s)	2140
MlyI	GAGTC	3 cut(s)	96, 826, 1034
MmeI	TCCRAC	1 cut(s)	814
Mox20I	TGGCCA	1 cut(s)	2140
Mph1103I	ATGCAT	1 cut(s)	844
MroI	TCCGGA	1 cut(s)	737
MscI	TGGCCA	1 cut(s)	2140
MslI	CAYNNNNRTG	3 cut(s)	524, 667, 1146
Msp20I	TGGCCA	1 cut(s)	2140
MspCI	CTTAAG	1 cut(s)	2743
MspI	CCGG	5 cut(s)	738, 1455, 1720, 1999, 2131
MspR9I	CCNGG	3 cut(s)	1456, 1999, 2132
MunI	CAATTG	4 cut(s)	447, 1119, 1806, 1976
Mva1269I	GAATGC	1 cut(s)	1010
MwoI	GCNNNNNNNGC	7 cut(s)	43, 379, 588, 932, 974, 1103, 2586
NciI	CCSGG	3 cut(s)	1456, 1999, 2132
NcoI	CCATGG	2 cut(s)	31, 2672
NdeII	GATC	8 cut(s)	27, 328, 339, 386, 490, 1483, 1621, 2254
NlaIV	GGNNCC	3 cut(s)	2298, 2299, 2563
NmuCI	GTSAC	2 cut(s)	686, 1662
NsiI	ATGCAT	1 cut(s)	844
NspI	RCATGY	2 cut(s)	1538, 2741
NspV	TTCGAA	1 cut(s)	1591
PagI	TCATGA	4 cut(s)	493, 717, 1480, 2239
PciI	ACATGT	1 cut(s)	1534
PctI	GAATGC	1 cut(s)	1010
PfeI	GAWTC	5 cut(s)	61, 239, 959, 1698, 2243
PfoI	TCCNGGA	2 cut(s)	1454, 2130
PinAI	ACCGGT	1 cut(s)	1719
PkrI	GCNGC	9 cut(s)	45, 214, 456, 590, 893, 1651, 2286, 2412, 2483
PleI	GAGTC	3 cut(s)	95, 826, 1034
PpsI	GAGTC	3 cut(s)	95, 826, 1034
Ppu21I	YACGTR	1 cut(s)	2015
PscI	ACATGT	1 cut(s)	1534
PshAI	GACNNNNGTC	1 cut(s)	2057
Psp124BI	GAGCTC	1 cut(s)	2025
Psp1406I	AACGTT	1 cut(s)	1090
PspN4I	GGNNCC	3 cut(s)	2298, 2299, 2563
PspOMI	GGGCCC	1 cut(s)	2297
PspPI	GGNCC	5 cut(s)	557, 1679, 1819, 2297, 2298
PstI	CTGCAG	1 cut(s)	2052
PstNI	CAGNNNCTG	1 cut(s)	970
RsaI	GTAC	3 cut(s)	183, 1280, 2013
RsaNI	GTAC	3 cut(s)	182, 1279, 2012
RseI	CAYNNNNRTG	3 cut(s)	524, 667, 1146
SacI	GAGCTC	1 cut(s)	2025
SatI	GCNGC	9 cut(s)	44, 213, 455, 589, 892, 1650, 2285, 2411, 2482
Sau3AI	GATC	8 cut(s)	27, 328, 339, 386, 490, 1483, 1621, 2254
Sau96I	GGNCC	5 cut(s)	557, 1679, 1819, 2297, 2298
SchI	GAGTC	3 cut(s)	96, 826, 1034
ScrFI	CCNGG	3 cut(s)	1456, 1999, 2132
SduI	GDGCHC	5 cut(s)	39, 1805, 2025, 2301, 2760
SfaNI	GCATC	6 cut(s)	120, 139, 145, 220, 829, 2710
SfcI	CTRYAG	3 cut(s)	2034, 2048, 2683
SfuI	TTCGAA	1 cut(s)	1591
SinI	GGWCC	1 cut(s)	1819
SmiMI	CAYNNNNRTG	3 cut(s)	524, 667, 1146
SmlI	CTYRAG	7 cut(s)	561, 1402, 2306, 2402, 2419, 2645, 2743
SmoI	CTYRAG	7 cut(s)	561, 1402, 2306, 2402, 2419, 2645, 2743
SsiI	CCGC	6 cut(s)	44, 588, 892, 910, 1828, 2578
SspI	AATATT	2 cut(s)	199, 2250
SspMI	CTAG	3 cut(s)	608, 1107, 2057
SstI	GAGCTC	1 cut(s)	2025
StyD4I	CCNGG	3 cut(s)	1454, 1997, 2130
StyI	CCWWGG	2 cut(s)	31, 2672
TaiI	ACGT	6 cut(s)	1093, 1367, 1915, 1950, 2017, 2637
TaqI	TCGA	4 cut(s)	1591, 2183, 2371, 2436
TatI	WGTACW	1 cut(s)	1278
TauI	GCSGC	3 cut(s)	46, 591, 894
TfiI	GAWTC	5 cut(s)	61, 239, 959, 1698, 2243
TscAI	CASTG	6 cut(s)	689, 876, 975, 1671, 1787, 2159
TseFI	GTSAC	2 cut(s)	686, 1662
TseI	GCWGC	6 cut(s)	212, 454, 1649, 2284, 2410, 2481
Tsp45I	GTSAC	2 cut(s)	686, 1662
TspGWI	ACGGA	1 cut(s)	2116
TspRI	CASTG	6 cut(s)	689, 876, 975, 1671, 1787, 2159
Vha464I	CTTAAG	1 cut(s)	2743
VpaK11BI	GGWCC	1 cut(s)	1819
XapI	RAATTY	9 cut(s)	538, 618, 711, 991, 1033, 1047, 1288, 2507, 2678
XceI	RCATGY	2 cut(s)	1538, 2741
XspI	CTAG	3 cut(s)	608, 1107, 2057
ZraI	GACGTC	1 cut(s)	1365
Zsp2I	ATGCAT	1 cut(s)	844

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.