Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000069

Physical Location & Seq

Genomic Coordinates Forward (+)

42268596 .. 42278890

Gene Structure 10295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG194100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2730 bp

ATGGCTGAAGGTGTTGTTACTGTTGTGGCTGAAGGGATCAAGCCCCTGGGAGATTTCATCATTCAGCAAGCGAAGTTCTTGAGTGGAGTCAGCTATCAAGTTGAGCTTGCACAAGTTGAACTTCACTTGATCCGGGGCTTTCTCAGAGATGCAGATGCAAGACAAGGAGACGAAGAAGTAGTACGCATTTGGGTTAAACTGATTAGAGATGCTGCTTATGACTTGGACGATATCATTGAATCTTTTGCCTTGAAAGTAGCTTCCAGGAGGAGAGGAGGTACTGTGAAGATTGCTCTCAAAAGGTTTGCCAGCATCTTTAATGAAGGAGTTAATCGATACAAGATTGGGTCCGAAATTGAGGATATTATGACCAAACTTTCTCATCTGAGGTCGAGTTTGCTGAGTTATAATATCAGGCAAATAAGTGGGGGTGAAGGCAGAGAGGTCTTCGAAGAAATTTTAATTAAACTCACTTCCCCAACAATAGAGAAAAGGAAAGAAATTTCCAAAATGAAAAAGGATGAAATAGCAATGGAGGTCTGTAGTATCCAACGAGAAAAGAGATGTCTGGTGGTCCTTGATGACATGTGGACTCAAGAGGCTTGGCATTCGATAAAAGCTGGATTCCCAATCAATGAGGAAACAGAGAGCCGAATATTACTCACTACTCGCAAGAAAGAAGTCGCCTCACTTGCATCAAAAAATGATAATCTCCACCAACCTCGACCACTAGATGACAACCAAAGCTGGGAACTGTTTGAAAATATAGCGGAATGTGGAAGCGACAAAACAGACTTGGAAATTTATGCAAAGAAGAGAGAATTAGGAAAGAAGATGCTTGTACATTGTTCAGGTTTACCATTAGCCATCAGTGTGCTTGCTGGTCTTCTTAGTAGACGAGAGACGGTTGATGAGTGGGATACGGTACTTAGAAATGTTGATGTATACATAATGAGAGGCACAAATGTCCTTGAAAGAGAAAAGACAGGTCAGGGGTGTGGTGTTTCAGGTGTCTTGGCATTGAGTTATGATGACTTACCATCTCACTTAAAACTATGCTTTTTGTATTTAGCCCAATTTCCTGAGGATCATGAGATACGGGTAAAAAGACTAGCTCAATTATGGATTGCAGAAGGGTTTATAACTTCAACGTCAGAAATGCATGTTTCAGTGGAAAGTTTGGAAGAAATGTCATATAGTTGCTTAGTTGAATTGGTGGAGAGATCTATGGTTCAAGTTGTAGAATATGGTTTAAGTGGGAAGGTGAAAACTTGCCGTCTCCATGATTTTATGCGAGACTTGTGCTTGCGAAAGGCAGAAGAGGAGAATTTTTTCCGAATTATTAACTTTTCTGCGGGACTGGTATCGAAGACAGCCCTAATTGGCAAGGTTCGAAGACTTGCCCTCTATTTGGACGAAAATGTGAAATATGATTTCAGTATGGATGGAAGAGATGACCACATTAGGTCTCTACTATACTTTACCCCGAAAGAGTTTGACCAAAAGTGGAACAAACAAGTAATGCGATCAGTATTCAATGACTTCAAATTGCTTAGAGTTCTGAAGTTTGAAAATATAGAGAGAGAATTTCAGTTGCCGAAAACGATTGGTAATCTAGTCCACTTGAGGTTTCTGAGTCTGAAGCATAGTGCATATCGTGGGTTGCCATCATCTGTATCTAAGCTGGTACTTTTGCAAACTCTAGATCTGCGGTATAATTATTTATATGAAGGATTTTGTTTTGGTCGGGAGAGGGCGACCAGAATCAGAAATGTGTTTTGGAATATGGAGCAACTGAGGCATTTATATTTACCTTGGAGTCACTATATAAGTGAACAGAAACTGTCATTTGCAAGGCTGTGCAATTTGCAGACGTTGGGTGATATTTCAATTGAGAAATGTGATTTGAATGACCTTGTTCAGTTAACCAATCTGAAGAAAATATCCATAATTGTATCACAGCCTAGTCACTTGGAAAAGTTCAAGAACATGTTGATATCAAGAAGTATTACATATGAGCATCTTCGATCGCTATCTTTGAAGTTAGACCGAGATGACAATGAGGATATAGCAAGAGATATAGTATTAAGGTGTCCTCATATATACAAGCTGCGACTGGTTGGGAAAATGACGGAGTTTCCAAAAGAGCTCCTGGACTATCCAAACCTCATCAAGATAACGCTGGTTAGTACCAAATTGAGGTGTGACCAGATAGAAATACTGAAGATGTTGCCCAAGTTAAGGGTGCTTTACCTGGGTAAGAATGCTTTCGAATCAAAAACAATGGTTTTCTCTCCAGGAGGCTTTCCTCATCTGGAATTTCTTACCCTTAGTGCTTTGTTTATGTTGAACGAGTGGAGGGTGGAGAAAGAAGCCATGCCTAGTCTTCAGAGATTGCATATTGAATGGTGCCTACATTTATGGGAAGTTCCAGATGGGCTTCAGCATATTACTACCCTCAAGGAATTAACAATCAACGTGATGACCGGTAGATTCTGCAGTAGGGTTGGGGAAGGAGGAGAGGATTTCTACAAAATTAAACATGTGCCTTCTATTATAATCACAAATATTGAACCCGACTACAAGAAAGACAAGGAGCCAGAAATGGAGGAAGCAGCAGGTGCGTCTCGAGTAGTTGCTAATGACTCTGAGGAATCAACTGTGGACGGACTATTGACAAAATGGTTCCGGCTGTGGAAAAAGGTCAGAACACCAGGTCGTCTGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0002230 GO:0002238 GO:0002239 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009615 GO:0009620 GO:0009626 GO:0009628 GO:0009637 GO:0009642 GO:0009646 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0012501 GO:0014070 GO:0016020 GO:0023052 GO:0030054 GO:0031347 GO:0032101 GO:0032870 GO:0033554 GO:0034050 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0043207 GO:0043900 GO:0044464 GO:0045087 GO:0046677 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071944 GO:0080134 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

909

Amino Acids

105.01

Weight (kDa)

7.99

Isoelectric Point (pI)

46.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	13 - 91	9.2e-19	Rx N-terminal domain
NB-ARC	PF00931	148 - 257	2.4e-20	NB-ARC domain
WHD_DRP	PF23559	360 - 435	5.8e-18	Disease resistance protein Winged helix domain
LRR_14	PF23598	506 - 828	3e-35	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G50180 AT1G53350 AT1G58390 AT1G58390 AT1G58400 AT1G58400 AT1G58400 AT1G58410 AT1G58410 AT1G58410 AT1G58410 AT1G58602 AT1G58602 AT1G58807 AT1G58807 AT1G58848 AT1G58848 AT1G59124 AT1G59124 AT1G59218 AT1G59218 AT1G59218 AT1G59620 AT1G59780 AT1G59780 AT5G35450 AT5G35450 AT5G43470 AT5G43470 AT5G43470 AT5G43470 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620
fragaria_vesca	FvH4_4g04072 FvH4_4g22931 FvH4_4g22931 FvH4_4g22940 FvH4_6g49940 FvH4_6g49940 FvH4_7g08100 FvH4_7g08870 FvH4_7g08870 FvH4_7g09280 FvH4_7g09290 FvH4_7g15190 FvH4_7g15200 FvH4_7g15240 FvH4_7g15240 FvH4_7g33440
malus_domestica	MD00G1174600.v1.1 MD01G1113700.v1.1 MD03G1071300.v1.1 MD04G1041500.v1.1 MD04G1238000.v1.1 MD07G1029000.v1.1 MD07G1092100.v1.1 MD07G1092300.v1.1 MD07G1092600.v1.1 MD12G1256300.v1.1 MD13G1128200.v1.1 MD13G1128400.v1.1 MD17G1268000.v1.1
prunus_persica	Prupe.1G041300_v2.0.a1 Prupe.1G041300_v2.0.a1 Prupe.1G042900_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043600_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G046700_v2.0.a1 Prupe.1G047700_v2.0.a1 Prupe.1G047900_v2.0.a1 Prupe.1G048000_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G049900_v2.0.a1 Prupe.1G051500_v2.0.a1 Prupe.1G051800_v2.0.a1 Prupe.1G051900_v2.0.a1 Prupe.1G052200_v2.0.a1 Prupe.1G194900_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117300_v2.0.a1 Prupe.2G117400_v2.0.a1 Prupe.2G117500_v2.0.a1 Prupe.2G117700_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G119900_v2.0.a1
pyrus_communis	pycom03g05750 pycom04g21110 pycom07g07530 pycom07g07590 pycom13g11110 pycom13g11140 pycom13g11160 pycom13g11170 pycom17g26680
rosa_chinensis	RchiOBHm_Chr1g0341231 RchiOBHm_Chr1g0344091 RchiOBHm_Chr1g0344161 RchiOBHm_Chr1g0345001 RchiOBHm_Chr1g0345351 RchiOBHm_Chr1g0345371 RchiOBHm_Chr1g0345391 RchiOBHm_Chr1g0345531 RchiOBHm_Chr1g0345551 RchiOBHm_Chr1g0345571 RchiOBHm_Chr1g0345581 RchiOBHm_Chr1g0345661 RchiOBHm_Chr1g0345691 RchiOBHm_Chr1g0345761 RchiOBHm_Chr1g0345791 RchiOBHm_Chr1g0345821 RchiOBHm_Chr1g0345911 RchiOBHm_Chr1g0345941 RchiOBHm_Chr1g0357611 RchiOBHm_Chr1g0357911 RchiOBHm_Chr1g0357921 RchiOBHm_Chr1g0357931 RchiOBHm_Chr1g0357971 RchiOBHm_Chr1g0358121 RchiOBHm_Chr1g0383491 RchiOBHm_Chr1g0383511 RchiOBHm_Chr1g0383521 RchiOBHm_Chr3g0480581 RchiOBHm_Chr4g0394341 RchiOBHm_Chr4g0394361 RchiOBHm_Chr4g0394411 RchiOBHm_Chr4g0394441 RchiOBHm_Chr4g0407681 RchiOBHm_Chr4g0429191 RchiOBHm_Chr4g0429201 RchiOBHm_Chr4g0429211 RchiOBHm_Chr4g0429221 RchiOBHm_Chr6g0265091
rosa_laevigata	RLG00000007088 RLG00000008700 RLG00000009190 RLG00000009702 RLG00000014210 RLG00000028829 RLG00000028833 RLG00000028837 RLG00000028838 RLG00000028921 RLG00000028926
rosa_multiflora	Rmu_co8366955.1_g000001 Rmu_co8394205.1_g000001 Rmu_sc0000019.1_g000001 Rmu_sc0000054.1_g000031 Rmu_sc0000054.1_g000033 Rmu_sc0000200.1_g000002 Rmu_sc0000200.1_g000007 Rmu_sc0000200.1_g000018 Rmu_sc0000200.1_g000020 Rmu_sc0000200.1_g000021 Rmu_sc0000251.1_g000012 Rmu_sc0000251.1_g000015 Rmu_sc0000251.1_g000028 Rmu_sc0000253.1_g000015 Rmu_sc0000255.1_g000045 Rmu_sc0000255.1_g000046 Rmu_sc0001292.1_g000013 Rmu_sc0001292.1_g000018 Rmu_sc0001292.1_g000028 Rmu_sc0001292.1_g000029 Rmu_sc0001349.1_g000006 Rmu_sc0001349.1_g000014 Rmu_sc0001582.1_g000006 Rmu_sc0001582.1_g000018 Rmu_sc0001582.1_g000020 Rmu_sc0001692.1_g000007 Rmu_sc0001692.1_g000024 Rmu_sc0001692.1_g000026 Rmu_sc0001692.1_g000029 Rmu_sc0001692.1_g000030 Rmu_sc0001835.1_g000006 Rmu_sc0001835.1_g000010 Rmu_sc0002071.1_g000005 Rmu_sc0002276.1_g000002 Rmu_sc0002276.1_g000009 Rmu_sc0002329.1_g000018 Rmu_sc0002329.1_g000023 Rmu_sc0002329.1_g000025 Rmu_sc0002523.1_g000005 Rmu_sc0003573.1_g000005 Rmu_sc0003573.1_g000006 Rmu_sc0004099.1_g000021 Rmu_sc0005812.1_g000009 Rmu_sc0006271.1_g000002 Rmu_sc0006287.1_g000038 Rmu_sc0006439.1_g000008 Rmu_sc0007456.1_g000004 Rmu_sc0007581.1_g000009 Rmu_sc0007849.1_g000014 Rmu_sc0008115.1_g000012 Rmu_sc0010521.1_g000004 Rmu_sc0012471.1_g000017 Rmu_sc0014762.1_g000001 Rmu_sc0015150.1_g000003 Rmu_sc0017221.1_g000001 Rmu_sc0017299.1_g000001 Rmu_sc0017299.1_g000002 Rmu_sc0021457.1_g000001 Rmu_sc0022067.1_g000001 Rmu_sc0033275.1_g000001 Rmu_ssc0000245.1_g000012 Rmu_ssc0000359.1_g000035 Rmu_ssc0000359.1_g000067 Rmu_ssc0000359.1_g000072 Rmu_ssc0000434.1_g000005 Rmu_ssc0000434.1_g000007
rosa_roxburghii	Rroxscaffold_4G00298420 Rroxscaffold_4G00298720 Rroxscaffold_4G00308990 Rroxscaffold_4G00309000 Rroxscaffold_4G00309010 Rroxscaffold_4G00309050 Rroxscaffold_4G00309070 Rroxscaffold_4G00309100 Rroxscaffold_4G00310030 Rroxscaffold_4G00310050 Rroxscaffold_4G00311880 Rroxscaffold_5G00339420 Rroxscaffold_5G00339450 Rroxscaffold_5G00344880 Rroxscaffold_5G00352270 Rroxscaffold_5G00362240 Rroxscaffold_5G00370840 Rroxscaffold_7G00202970
rosa_rugosa	Rorug01G0159100.1 Rorug01G0159200.1 Rorug01G0171700 Rorug01G0171900 Rorug01G0172000 Rorug01G0191700 Rorug01G0191800 Rorug01G0256900 Rorug01G0257000 Rorug01G0257100 Rorug03G0198000 Rorug03G0366300.1 Rorug03G0366400.1 Rorug03G0366500.1 Rorug04G0081200 Rorug04G0081200 Rorug04G0081200 Rorug04G0233700 Rorug04G0233800 Rorug04G0233800 Rorug06G0013300
rosa_samantha	Rh1CG138800 Rh1CG161300 Rh1CG173800 Rh1CG179800 Rh1CG180100 Rh1CG180500 Rh1CG180800 Rh1CG180900 Rh1CG194100 Rh1DG205100 Rh3AG236300 Rh4AG052000 Rh4AG052100 Rh4AG145900 Rh4AG289700 Rh4AG289800 Rh6AG136800 Rh6AG137300 Rh6BG133600 Rh6CG132000 Rh6CG134000 Rh6DG119300
rosa_wichuraiana	Rw0G003420 Rw1G015500 Rw1G016110 Rw1G016180 Rw1G016210 Rw1G016230 Rw1G016280 Rw1G016440 Rw1G016450 Rw1G016460 Rw1G016480 Rw1G017490 Rw1G024140 Rw1G024160 Rw3G022530 Rw4G004140 Rw4G004190 Rw4G011850 Rw6G011800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	408, 1142, 2558
AarI	CACCTGC	1 cut(s)	2609
Acc36I	ACCTGC	1 cut(s)	2609
AccB1I	GGYRCC	1 cut(s)	2409
AccI	GTMKAC	2 cut(s)	895, 945
AciI	CCGC	3 cut(s)	770, 1355, 1711
AclWI	GGATC	3 cut(s)	44, 124, 1095
AcsI	RAATTY	6 cut(s)	456, 501, 801, 1327, 1586, 2318
AcuI	CTGAAG	8 cut(s)	27, 51, 1583, 1661, 1955, 2243, 2372, 2426
AfaI	GTAC	6 cut(s)	183, 280, 843, 927, 1689, 2191
AfiI	CCNNNNNNNGG	4 cut(s)	748, 1411, 2199, 2241
AflIII	ACRYGT	3 cut(s)	585, 1989, 2542
AgeI	ACCGGT	1 cut(s)	2486
AjnI	CCWGG	6 cut(s)	45, 263, 2151, 2253, 2296, 2713
AjuI	GAANNNNNNNTTGG	2 cut(s)	1762, 1794
AluBI	AGCT	9 cut(s)	93, 106, 260, 620, 747, 1115, 1684, 2110, 2149
AluI	AGCT	9 cut(s)	93, 106, 260, 620, 747, 1115, 1684, 2110, 2149
Alw21I	GWGCWC	1 cut(s)	2151
Alw26I	GTCTC	6 cut(s)	162, 896, 1283, 1290, 1473, 2631
AlwI	GGATC	3 cut(s)	44, 124, 1095
AlwNI	CAGNNNCTG	1 cut(s)	1843
Ama87I	CYCGRG	1 cut(s)	2628
ApeKI	GCWGC	3 cut(s)	212, 2110, 2615
ApoI	RAATTY	6 cut(s)	456, 501, 801, 1327, 1586, 2318
AsiGI	ACCGGT	1 cut(s)	2486
Asp700I	GAANNNNTTC	2 cut(s)	1331, 2267
AspS9I	GGNCC	2 cut(s)	348, 574
AsuC2I	CCSGG	1 cut(s)	134
AsuHPI	GGTGA	3 cut(s)	443, 1276, 1892
AsuII	TTCGAA	3 cut(s)	450, 1393, 2271
AvaI	CYCGRG	1 cut(s)	2628
AvaII	GGWCC	2 cut(s)	348, 574
AxyI	CCTNAGG	1 cut(s)	1083
BanI	GGYRCC	1 cut(s)	2409
BanII	GRGCYC	1 cut(s)	2151
BarI	GAAGNNNNNNTAC	2 cut(s)	165, 197
BbsI	GAAGAC	5 cut(s)	439, 878, 1376, 1402, 2378
Bbv12I	GWGCWC	1 cut(s)	2151
BbvI	GCAGC	3 cut(s)	199, 2097, 2627
BccI	CCATC	5 cut(s)	875, 1048, 1439, 1675, 2429
BceAI	ACGGC	1 cut(s)	1260
BcgI	CGANNNNNNTGC	2 cut(s)	1284, 1318
BciT130I	CCWGG	6 cut(s)	47, 265, 2153, 2255, 2298, 2715
BciVI	GTATCC	2 cut(s)	557, 913
BcnI	CCSGG	1 cut(s)	134
BcoDI	GTCTC	6 cut(s)	162, 896, 1283, 1290, 1473, 2631
BfaI	CTAG	6 cut(s)	731, 1112, 1616, 1703, 1965, 2382
BfmI	CTRYAG	2 cut(s)	541, 2497
BfuAI	ACCTGC	1 cut(s)	2609
BfuI	GTATCC	2 cut(s)	557, 913
BglII	AGATCT	2 cut(s)	1223, 1705
BisI	GCNGC	3 cut(s)	213, 2111, 2616
BlsI	GCNGC	3 cut(s)	214, 2112, 2617
Bme1390I	CCNGG	7 cut(s)	47, 134, 265, 2153, 2255, 2298, 2715
Bme18I	GGWCC	2 cut(s)	348, 574
BmeT110I	CYCGRG	1 cut(s)	2628
BmgT120I	GGNCC	2 cut(s)	348, 574
BmiI	GGNNCC	4 cut(s)	349, 2411, 2598, 2687
BmrFI	CCNGG	7 cut(s)	47, 134, 265, 2153, 2255, 2298, 2715
BmsI	GCATC	7 cut(s)	139, 145, 199, 321, 704, 825, 2029
BpiI	GAAGAC	5 cut(s)	439, 878, 1376, 1402, 2378
BpmI	CTGGAG	1 cut(s)	2280
Bpu14I	TTCGAA	3 cut(s)	450, 1393, 2271
BpuEI	CTTGAG	4 cut(s)	100, 579, 1645, 2444
BpuMI	CCSGG	1 cut(s)	134
Bsa29I	ATCGAT	1 cut(s)	334
BsaBI	GATNNNNATC	1 cut(s)	2032
BsaI	GGTCTC	1 cut(s)	1473
BsaJI	CCNNGG	5 cut(s)	45, 46, 133, 1814, 2254
BsaWI	WCCGGW	1 cut(s)	2486
BsaXI	ACNNNNNCTCC	4 cut(s)	262, 267, 292, 297
Bsc4I	CCNNNNNNNGG	4 cut(s)	748, 1411, 2199, 2241
Bse118I	RCCGGY	1 cut(s)	2486
Bse1I	ACTGG	2 cut(s)	1365, 2121
Bse21I	CCTNAGG	1 cut(s)	1083
Bse3DI	GCAATG	1 cut(s)	537
Bse8I	GATNNNNATC	1 cut(s)	2032
BseBI	CCWGG	6 cut(s)	47, 265, 2153, 2255, 2298, 2715
BseCI	ATCGAT	1 cut(s)	334
BseDI	CCNNGG	5 cut(s)	45, 46, 133, 1814, 2254
BseGI	GGATG	2 cut(s)	526, 1450
BseJI	GATNNNNATC	1 cut(s)	2032
BseLI	CCNNNNNNNGG	4 cut(s)	748, 1411, 2199, 2241
BseMI	GCAATG	1 cut(s)	537
BseMII	CTCAG	7 cut(s)	157, 377, 392, 1074, 1625, 1787, 2640
BseNI	ACTGG	2 cut(s)	1365, 2121
BseRI	GAGGAG	4 cut(s)	283, 288, 1337, 2532
BseXI	GCAGC	3 cut(s)	199, 2097, 2627
BseYI	CCCAGC	1 cut(s)	747
Bsh1285I	CGRYCG	1 cut(s)	2030
BshNI	GGYRCC	1 cut(s)	2409
BshTI	ACCGGT	1 cut(s)	2486
BshVI	ATCGAT	1 cut(s)	334
BsiEI	CGRYCG	1 cut(s)	2030
BsiHKAI	GWGCWC	1 cut(s)	2151
BsiHKCI	CYCGRG	1 cut(s)	2628
BsiSI	CCGG	3 cut(s)	133, 2487, 2689
BslFI	GGGAC	1 cut(s)	1371
BslI	CCNNNNNNNGG	4 cut(s)	748, 1411, 2199, 2241
BsmAI	GTCTC	6 cut(s)	162, 896, 1283, 1290, 1473, 2631
BsmBI	CGTCTC	4 cut(s)	162, 896, 1283, 2631
BsmFI	GGGAC	1 cut(s)	1371
BsmI	GAATGC	2 cut(s)	607, 2269
Bso31I	GGTCTC	1 cut(s)	1473
BsoBI	CYCGRG	1 cut(s)	2628
Bsp119I	TTCGAA	3 cut(s)	450, 1393, 2271
Bsp1286I	GDGCHC	1 cut(s)	2151
Bsp1407I	TGTACA	1 cut(s)	841
Bsp143I	GATC	7 cut(s)	36, 129, 1087, 1223, 1526, 1705, 2027
BspACI	CCGC	3 cut(s)	770, 1355, 1711
BspCNI	CTCAG	7 cut(s)	156, 378, 393, 1075, 1626, 1788, 2641
BspDI	ATCGAT	1 cut(s)	334
BspHI	TCATGA	1 cut(s)	1090
BspLI	GGNNCC	4 cut(s)	349, 2411, 2598, 2687
BspMAI	CTGCAG	1 cut(s)	2501
BspMI	ACCTGC	1 cut(s)	2609
BspPI	GGATC	3 cut(s)	44, 124, 1095
BspT104I	TTCGAA	3 cut(s)	450, 1393, 2271
BspT107I	GGYRCC	1 cut(s)	2409
BspTNI	GGTCTC	1 cut(s)	1473
BsrDI	GCAATG	1 cut(s)	537
BsrFI	RCCGGY	1 cut(s)	2486
BsrGI	TGTACA	1 cut(s)	841
BsrI	ACTGG	2 cut(s)	1365, 2121
BssAI	RCCGGY	1 cut(s)	2486
BssECI	CCNNGG	5 cut(s)	45, 46, 133, 1814, 2254
BssMI	GATC	7 cut(s)	36, 129, 1087, 1223, 1526, 1705, 2027
BssNAI	GTATAC	1 cut(s)	946
BssT1I	CCWWGG	1 cut(s)	1814
Bst1107I	GTATAC	1 cut(s)	946
Bst2UI	CCWGG	6 cut(s)	47, 265, 2153, 2255, 2298, 2715
Bst4CI	ACNGT	7 cut(s)	22, 283, 756, 907, 925, 1845, 2662
Bst6I	CTCTTC	3 cut(s)	809, 1314, 1444
BstAPI	GCANNNNNTGC	1 cut(s)	2621
BstAUI	TGTACA	1 cut(s)	841
BstBI	TTCGAA	3 cut(s)	450, 1393, 2271
BstC8I	GCNNGC	5 cut(s)	69, 108, 310, 879, 1307
BstF5I	GGATG	2 cut(s)	526, 1450
BstKTI	GATC	7 cut(s)	39, 132, 1090, 1226, 1529, 1708, 2030
BstMAI	GTCTC	6 cut(s)	162, 896, 1283, 1290, 1473, 2631
BstMBI	GATC	7 cut(s)	36, 129, 1087, 1223, 1526, 1705, 2027
BstMCI	CGRYCG	1 cut(s)	2030
BstMWI	GCNNNNNNNGC	3 cut(s)	692, 1798, 2621
BstNI	CCWGG	6 cut(s)	47, 265, 2153, 2255, 2298, 2715
BstNSI	RCATGY	4 cut(s)	589, 1166, 1993, 2546
BstSCI	CCNGG	7 cut(s)	45, 132, 263, 2151, 2253, 2296, 2713
BstSFI	CTRYAG	2 cut(s)	541, 2497
BstV1I	GCAGC	3 cut(s)	199, 2097, 2627
BstV2I	GAAGAC	5 cut(s)	439, 878, 1376, 1402, 2378
BstX2I	RGATCY	2 cut(s)	1223, 1705
BstYI	RGATCY	2 cut(s)	1223, 1705
BstZ17I	GTATAC	1 cut(s)	946
Bsu15I	ATCGAT	1 cut(s)	334
Bsu36I	CCTNAGG	1 cut(s)	1083
BsuI	GTATCC	2 cut(s)	557, 913
BsuTUI	ATCGAT	1 cut(s)	334
BtsCI	GGATG	2 cut(s)	526, 1450
BtsIMutI	CAGTG	2 cut(s)	877, 1176
BveI	ACCTGC	1 cut(s)	2609
Cac8I	GCNNGC	5 cut(s)	69, 108, 310, 879, 1307
CaiI	CAGNNNCTG	1 cut(s)	1843
CciI	TCATGA	1 cut(s)	1090
Cfr10I	RCCGGY	1 cut(s)	2486
Cfr13I	GGNCC	2 cut(s)	348, 574
ClaI	ATCGAT	1 cut(s)	334
CseI	GACGC	1 cut(s)	2613
CsiI	ACCWGGT	1 cut(s)	2713
Csp6I	GTAC	6 cut(s)	182, 279, 842, 926, 1688, 2190
CspAI	ACCGGT	1 cut(s)	2486
CviAII	CATG	7 cut(s)	586, 1091, 1163, 1283, 1990, 2377, 2543
CviQI	GTAC	6 cut(s)	182, 279, 842, 926, 1688, 2190
DpnI	GATC	7 cut(s)	38, 131, 1089, 1225, 1528, 1707, 2029
DpnII	GATC	7 cut(s)	36, 129, 1087, 1223, 1526, 1705, 2027
Eam1104I	CTCTTC	3 cut(s)	809, 1314, 1444
EarI	CTCTTC	3 cut(s)	809, 1314, 1444
Ecl136II	GAGCTC	1 cut(s)	2149
Eco130I	CCWWGG	1 cut(s)	1814
Eco24I	GRGCYC	1 cut(s)	2151
Eco31I	GGTCTC	1 cut(s)	1473
Eco32I	GATATC	2 cut(s)	232, 1998
Eco47I	GGWCC	2 cut(s)	348, 574
Eco53kI	GAGCTC	1 cut(s)	2149
Eco57I	CTGAAG	8 cut(s)	27, 51, 1583, 1661, 1955, 2243, 2372, 2426
Eco81I	CCTNAGG	1 cut(s)	1083
Eco88I	CYCGRG	1 cut(s)	2628
EcoICRI	GAGCTC	1 cut(s)	2149
EcoRII	CCWGG	6 cut(s)	45, 263, 2151, 2253, 2296, 2713
EcoRV	GATATC	2 cut(s)	232, 1998
EcoT14I	CCWWGG	1 cut(s)	1814
EcoT22I	ATGCAT	1 cut(s)	1164
EcoT38I	GRGCYC	1 cut(s)	2151
ErhI	CCWWGG	1 cut(s)	1814
Esp3I	CGTCTC	4 cut(s)	162, 896, 1283, 2631
FaeI	CATG	7 cut(s)	589, 1094, 1166, 1286, 1993, 2380, 2546
FalI	AAGNNNNNCTT	4 cut(s)	90, 122, 105, 137
FaqI	GGGAC	1 cut(s)	1371
FatI	CATG	7 cut(s)	585, 1090, 1162, 1282, 1989, 2376, 2542
FauI	CCCGC	1 cut(s)	1348
FauNDI	CATATG	1 cut(s)	2014
FblI	GTMKAC	2 cut(s)	895, 945
Fnu4HI	GCNGC	3 cut(s)	213, 2111, 2616
FokI	GGATG	2 cut(s)	533, 1457
FriOI	GRGCYC	1 cut(s)	2151
Fsp4HI	GCNGC	3 cut(s)	213, 2111, 2616
FspBI	CTAG	6 cut(s)	731, 1112, 1616, 1703, 1965, 2382
GluI	GCNGC	3 cut(s)	213, 2111, 2616
GsaI	CCCAGC	1 cut(s)	751
GsuI	CTGGAG	1 cut(s)	2280
HapII	CCGG	3 cut(s)	133, 2487, 2689
HgaI	GACGC	1 cut(s)	2613
Hin1II	CATG	7 cut(s)	589, 1094, 1166, 1286, 1993, 2380, 2546
HincII	GTYRAC	1 cut(s)	1926
HindII	GTYRAC	1 cut(s)	1926
HpaI	GTTAAC	1 cut(s)	1926
HpaII	CCGG	3 cut(s)	133, 2487, 2689
HphI	GGTGA	3 cut(s)	443, 1276, 1892
Hpy166II	GTNNAC	8 cut(s)	591, 857, 896, 946, 1621, 1835, 1926, 2665
Hpy8I	GTNNAC	8 cut(s)	591, 857, 896, 946, 1621, 1835, 1926, 2665
HpyAV	CCTTC	8 cut(s)	26, 317, 428, 1127, 1255, 1724, 2507, 2559
HpyCH4III	ACNGT	7 cut(s)	22, 283, 756, 907, 925, 1845, 2662
HpyCH4IV	ACGT	3 cut(s)	1151, 1874, 2478
HpyF10VI	GCNNNNNNNGC	3 cut(s)	692, 1798, 2621
HpySE526I	ACGT	3 cut(s)	1151, 1874, 2478
Hsp92II	CATG	7 cut(s)	589, 1094, 1166, 1286, 1993, 2380, 2546
KspAI	GTTAAC	1 cut(s)	1926
Kzo9I	GATC	7 cut(s)	36, 129, 1087, 1223, 1526, 1705, 2027
LmnI	GCTCC	3 cut(s)	1789, 2154, 2596
Lsp1109I	GCAGC	3 cut(s)	199, 2097, 2627
LweI	GCATC	7 cut(s)	139, 145, 199, 321, 704, 825, 2029
MabI	ACCWGGT	1 cut(s)	2713
MaeI	CTAG	6 cut(s)	731, 1112, 1616, 1703, 1965, 2382
MaeII	ACGT	3 cut(s)	1151, 1874, 2478
MaeIII	GTNAC	4 cut(s)	16, 1820, 1967, 2204
MalI	GATC	7 cut(s)	38, 131, 1089, 1225, 1528, 1707, 2029
MboI	GATC	7 cut(s)	36, 129, 1087, 1223, 1526, 1705, 2027
MfeI	CAATTG	1 cut(s)	1890
MflI	RGATCY	2 cut(s)	1223, 1705
MhlI	GDGCHC	1 cut(s)	2151
MlyI	GAGTC	5 cut(s)	96, 586, 1645, 1828, 2639
MmeI	TCCRAC	1 cut(s)	574
Mph1103I	ATGCAT	1 cut(s)	1164
MroXI	GAANNNNTTC	2 cut(s)	1331, 2267
MslI	CAYNNNNRTG	1 cut(s)	872
MspI	CCGG	3 cut(s)	133, 2487, 2689
MspR9I	CCNGG	7 cut(s)	47, 134, 265, 2153, 2255, 2298, 2715
MunI	CAATTG	1 cut(s)	1890
Mva1269I	GAATGC	2 cut(s)	607, 2269
MvaI	CCWGG	6 cut(s)	47, 265, 2153, 2255, 2298, 2715
MwoI	GCNNNNNNNGC	3 cut(s)	692, 1798, 2621
NciI	CCSGG	1 cut(s)	134
NdeI	CATATG	1 cut(s)	2014
NdeII	GATC	7 cut(s)	36, 129, 1087, 1223, 1526, 1705, 2027
NlaIII	CATG	7 cut(s)	589, 1094, 1166, 1286, 1993, 2380, 2546
NlaIV	GGNNCC	4 cut(s)	349, 2411, 2598, 2687
NmuCI	GTSAC	3 cut(s)	1820, 1967, 2204
NsiI	ATGCAT	1 cut(s)	1164
NspI	RCATGY	4 cut(s)	589, 1166, 1993, 2546
NspV	TTCGAA	3 cut(s)	450, 1393, 2271
PacI	TTAATTAA	1 cut(s)	465
PaeR7I	CTCGAG	1 cut(s)	2628
PagI	TCATGA	1 cut(s)	1090
PaqCI	CACCTGC	1 cut(s)	2609
PasI	CCCWGGG	1 cut(s)	46
PciI	ACATGT	3 cut(s)	585, 1989, 2542
PctI	GAATGC	2 cut(s)	607, 2269
PdmI	GAANNNNTTC	2 cut(s)	1331, 2267
PfeI	GAWTC	6 cut(s)	239, 624, 1764, 2273, 2493, 2654
PfoI	TCCNGGA	3 cut(s)	263, 2151, 2296
PinAI	ACCGGT	1 cut(s)	2486
PkrI	GCNGC	3 cut(s)	214, 2112, 2617
Ple19I	CGATCG	1 cut(s)	2030
PleI	GAGTC	5 cut(s)	95, 586, 1644, 1827, 2639
PpsI	GAGTC	5 cut(s)	95, 586, 1644, 1827, 2639
PscI	ACATGT	3 cut(s)	585, 1989, 2542
PsiI	TTATAA	3 cut(s)	408, 1142, 2558
Psp124BI	GAGCTC	1 cut(s)	2151
Psp6I	CCWGG	6 cut(s)	45, 263, 2151, 2253, 2296, 2713
PspFI	CCCAGC	1 cut(s)	747
PspGI	CCWGG	6 cut(s)	45, 263, 2151, 2253, 2296, 2713
PspN4I	GGNNCC	4 cut(s)	349, 2411, 2598, 2687
PspPI	GGNCC	2 cut(s)	348, 574
PstI	CTGCAG	1 cut(s)	2501
PstNI	CAGNNNCTG	1 cut(s)	1843
PsuI	RGATCY	2 cut(s)	1223, 1705
PvuI	CGATCG	1 cut(s)	2030
RsaI	GTAC	6 cut(s)	183, 280, 843, 927, 1689, 2191
RsaNI	GTAC	6 cut(s)	182, 279, 842, 926, 1688, 2190
RseI	CAYNNNNRTG	1 cut(s)	872
SacI	GAGCTC	1 cut(s)	2151
SatI	GCNGC	3 cut(s)	213, 2111, 2616
Sau3AI	GATC	7 cut(s)	36, 129, 1087, 1223, 1526, 1705, 2027
Sau96I	GGNCC	2 cut(s)	348, 574
SchI	GAGTC	5 cut(s)	96, 586, 1645, 1828, 2639
ScrFI	CCNGG	7 cut(s)	47, 134, 265, 2153, 2255, 2298, 2715
SduI	GDGCHC	1 cut(s)	2151
SexAI	ACCWGGT	1 cut(s)	2713
SfaNI	GCATC	7 cut(s)	139, 145, 199, 321, 704, 825, 2029
SfcI	CTRYAG	2 cut(s)	541, 2497
Sfr274I	CTCGAG	1 cut(s)	2628
SfuI	TTCGAA	3 cut(s)	450, 1393, 2271
SinI	GGWCC	2 cut(s)	348, 574
SlaI	CTCGAG	1 cut(s)	2628
SmiMI	CAYNNNNRTG	1 cut(s)	872
SmlI	CTYRAG	5 cut(s)	79, 594, 1624, 2459, 2628
SmoI	CTYRAG	5 cut(s)	79, 594, 1624, 2459, 2628
SsiI	CCGC	3 cut(s)	770, 1355, 1711
SspI	AATATT	2 cut(s)	657, 2569
SspMI	CTAG	6 cut(s)	731, 1112, 1616, 1703, 1965, 2382
SstI	GAGCTC	1 cut(s)	2151
StyD4I	CCNGG	7 cut(s)	45, 132, 263, 2151, 2253, 2296, 2713
StyI	CCWWGG	1 cut(s)	1814
TaaI	ACNGT	7 cut(s)	22, 283, 756, 907, 925, 1845, 2662
TaiI	ACGT	3 cut(s)	1154, 1877, 2481
TaqII	GACCGA	1 cut(s)	2064
TatI	WGTACW	1 cut(s)	841
TfiI	GAWTC	6 cut(s)	239, 624, 1764, 2273, 2493, 2654
TscAI	CASTG	2 cut(s)	877, 1176
TseFI	GTSAC	3 cut(s)	1820, 1967, 2204
TseI	GCWGC	3 cut(s)	212, 2110, 2615
Tsp45I	GTSAC	3 cut(s)	1820, 1967, 2204
TspDTI	ATGAA	5 cut(s)	46, 336, 527, 537, 1743
TspGWI	ACGGA	2 cut(s)	2147, 2682
TspRI	CASTG	2 cut(s)	877, 1176
VpaK11BI	GGWCC	2 cut(s)	348, 574
XapI	RAATTY	6 cut(s)	456, 501, 801, 1327, 1586, 2318
XbaI	TCTAGA	1 cut(s)	1702
XceI	RCATGY	4 cut(s)	589, 1166, 1993, 2546
XhoI	CTCGAG	1 cut(s)	2628
XmiI	GTMKAC	2 cut(s)	895, 945
XmnI	GAANNNNTTC	2 cut(s)	1331, 2267
XspI	CTAG	6 cut(s)	731, 1112, 1616, 1703, 1965, 2382
Zsp2I	ATGCAT	1 cut(s)	1164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.