Rroxscaffold_4G00309070

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
30707377 .. 30714398
7022 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00309070.1

Sequence Viewer

Length: 2214 bp
ATGAAAAAGGATGAAATAGCAAGGGAGGTCCGTAGTATCCAACGAGAAAAGAGATGTCCGGTGGTCCTTGATGACATATGGACTCAAGAGGCTTGGCATTCGATAAAAGCTGGATTCCCAATCAATGAGGAAACAGAGCGGATATTACTCACTACTCGCAAGAAAGAAGTTGCCTTGCTTGCTTCCAAAAATGATCATCTCCACCAACCTCGACCACTAGATGACAACCAGAGCTGGGAACTGTTTGAAAAGATAGCGATGTGTGGAAGCGACAAAACAGACTTGGAAATCTATGCAAAGAAGAGAGAATTAGGAAAGAAGATGCTTGTACATTGTTCAGGTTTACCATTAGCCATCAATGTGCTCGCTGGTCTTCTTAGTAGACGAGAGACGATTGATGAGTGGGATGCAGTACTTCTTAATGTTGATGTATACATAATGAGAGGCATAAATGTCCTTGAAAGAGAAAAGACAGGTCAGGAGTGTGGTGTTTCAGGTGTCTTGGCATTGAGTTATGATGACTTACCATCTCACTTAAAACTATGCTTTTTGTATTTAGCCCAATTTCCTGAGGATCATGAAATACGGGTAAAAAGACTTACTCAATTATGGATTGCAGAAGGATTTATAACTTCAACGTCAGAAATGCATGTTTCAGGGGAAATTTTGGAAGAATTGTCATATAGTTGCCTAGTTGAATTGGTGGAAAGATCTATGGTTCAAGTTGTAGAATATGGTTTAAGTGGGAAGGTGAAAACTTGCGGTCTCCATGATTTTATGCGAGACTTGTGCTTGCAAAAGGCAGAAGAGGAGAATTTTCTCCGAATTATTAACTTTTCTACGGGACTGGTATCTAAGACACCACTAATTGGCAAGGTTCGAAGACTTGCCCTCCATTTGGACGAAAATGTTAAATATAATTTCAGTATAGATGGAAGAGATGAGCATATTAGGTCTCTATTATACTTTACCCCAAAAGGGTTTGACCAAAAGTGGAACAAAAAAGTAATGCGATCAGTATTCAATGACTTCAAATTGCTTAGAGTTCTGAAGTTCGAAAAAATAGAGAGAGAATTTCAGTTACCGAAAACGATTGGGAATCTAGTCCACTTGAGGTTTCTGAGTCTGAAGCATAGTGCATATAGTGGGTTGCCATCATCTGTTTCTAATCTGGTACTTTTGCAAACTCTAGATCTGCGGTATAATTATTATTTATATGAAGGATCTTGTTTTGGTCGGGAGAGGGCAACCAGAATCAGAAATGTGTTTTGGAATATGGAGCAACTGAGGCATTTATATTTACCTTGGCGTCACTATATAAGTGAACAGAAACTCTCATTTGCAAGGCTGTGCAATTTGCAGACGCTGGGTGATCTTCCAATTGAGAAATGTGAGTTAAATGATCTTGTTCGGTTAAGCAATCTAAAGAAAATATCCATAATCGTATCACAGCTTAGTCACTTGGAAAAGTTCAAGAACATGTTGATATCAAGAAGTATAACATATGAGCATCTTCGATCGCTATCTTTGAAGCTAAACCGAGATGATAATGAGGATATAGCAAGAGATATAGTGTTAAGGTGTCCTTATTTATACAAACTGCGACTGCTTGGGAAAATGACGGAGTTTCCAGAAGAGCTCCTGGGCTATCCAAAACTCACCAAGATAACGCTGGTTAGTACAGAACTGAGATGTGACCAGATAGATATAGTGAAGATGCTGCCCAAGTTAAGGGTGCTTTACCTGGGTCGTGATGCTTTCAAATCAAAAACAATGGTTTTCTCCCTAGGAGGCTTTCCTCATCTGGAATTTCTTACACTAAGTGCTTTGTTTATGTTGAACGAGTGGAGGGTGGAGAAAGAAGCCCTGCCTAGTCTTCAGAGATTGCATATTGAATGGTGCTTACAATTGTGGGAAGTACCAGATGGGCTTCAGCATATTACTACCCTCAAGGAATTAACAATCAATGTGATGACCAGTAGATTCTGCAGTAGGATTGGGGAAGAAGGAGAGGATTTCTACAAAATTAAACATGTGCCTTCTATTATAATCACTAATATACAACCCGACTACAAGAAAGACAAGGAGCCAGAAATGGAGGAAGCAGCAGGTGCGTCTCGAGTAGTTGCTAATGACTCTGAGGAATCAACTGTGGACGCTCCTCCGCCTCCTGAAGAAAAAACAGAGGAAATACAAGCTGCATCCACTCCTTAA

Protein Analysis

737

Amino Acids

85.47

Weight (kDa)

6.73

Isoelectric Point (pI)

46.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 3 - 89 1.3e-17 NB-ARC domain
WHD_DRP PF23559 189 - 264 5.2e-17 Disease resistance protein Winged helix domain
LRR_14 PF23598 334 - 661 3.1e-31 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000069)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G50180 AT1G53350 AT1G58390 AT1G58390 AT1G58400 AT1G58400 AT1G58400 AT1G58410 AT1G58410 AT1G58410 AT1G58410 AT1G58602 AT1G58602 AT1G58807 AT1G58807 AT1G58848 AT1G58848 AT1G59124 AT1G59124 AT1G59218 AT1G59218 AT1G59218 AT1G59620 AT1G59780 AT1G59780 AT5G35450 AT5G35450 AT5G43470 AT5G43470 AT5G43470 AT5G43470 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620
fragaria_vesca FvH4_4g04072 FvH4_4g22931 FvH4_4g22931 FvH4_4g22940 FvH4_6g49940 FvH4_6g49940 FvH4_7g08100 FvH4_7g08870 FvH4_7g08870 FvH4_7g09280 FvH4_7g09290 FvH4_7g15190 FvH4_7g15200 FvH4_7g15240 FvH4_7g15240 FvH4_7g33440
malus_domestica MD00G1174600.v1.1 MD01G1113700.v1.1 MD03G1071300.v1.1 MD04G1041500.v1.1 MD04G1238000.v1.1 MD07G1029000.v1.1 MD07G1092100.v1.1 MD07G1092300.v1.1 MD07G1092600.v1.1 MD12G1256300.v1.1 MD13G1128200.v1.1 MD13G1128400.v1.1 MD17G1268000.v1.1
prunus_persica Prupe.1G041300_v2.0.a1 Prupe.1G041300_v2.0.a1 Prupe.1G042900_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043600_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G046700_v2.0.a1 Prupe.1G047700_v2.0.a1 Prupe.1G047900_v2.0.a1 Prupe.1G048000_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G049900_v2.0.a1 Prupe.1G051500_v2.0.a1 Prupe.1G051800_v2.0.a1 Prupe.1G051900_v2.0.a1 Prupe.1G052200_v2.0.a1 Prupe.1G194900_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117300_v2.0.a1 Prupe.2G117400_v2.0.a1 Prupe.2G117500_v2.0.a1 Prupe.2G117700_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G119900_v2.0.a1
pyrus_communis pycom03g05750 pycom04g21110 pycom07g07530 pycom07g07590 pycom13g11110 pycom13g11140 pycom13g11160 pycom13g11170 pycom17g26680
rosa_chinensis RchiOBHm_Chr1g0341231 RchiOBHm_Chr1g0344091 RchiOBHm_Chr1g0344161 RchiOBHm_Chr1g0345001 RchiOBHm_Chr1g0345351 RchiOBHm_Chr1g0345371 RchiOBHm_Chr1g0345391 RchiOBHm_Chr1g0345531 RchiOBHm_Chr1g0345551 RchiOBHm_Chr1g0345571 RchiOBHm_Chr1g0345581 RchiOBHm_Chr1g0345661 RchiOBHm_Chr1g0345691 RchiOBHm_Chr1g0345761 RchiOBHm_Chr1g0345791 RchiOBHm_Chr1g0345821 RchiOBHm_Chr1g0345911 RchiOBHm_Chr1g0345941 RchiOBHm_Chr1g0357611 RchiOBHm_Chr1g0357911 RchiOBHm_Chr1g0357921 RchiOBHm_Chr1g0357931 RchiOBHm_Chr1g0357971 RchiOBHm_Chr1g0358121 RchiOBHm_Chr1g0383491 RchiOBHm_Chr1g0383511 RchiOBHm_Chr1g0383521 RchiOBHm_Chr3g0480581 RchiOBHm_Chr4g0394341 RchiOBHm_Chr4g0394361 RchiOBHm_Chr4g0394411 RchiOBHm_Chr4g0394441 RchiOBHm_Chr4g0407681 RchiOBHm_Chr4g0429191 RchiOBHm_Chr4g0429201 RchiOBHm_Chr4g0429211 RchiOBHm_Chr4g0429221 RchiOBHm_Chr6g0265091
rosa_laevigata RLG00000007088 RLG00000008700 RLG00000009190 RLG00000009702 RLG00000014210 RLG00000028829 RLG00000028833 RLG00000028837 RLG00000028838 RLG00000028921 RLG00000028926
rosa_multiflora Rmu_co8366955.1_g000001 Rmu_co8394205.1_g000001 Rmu_sc0000019.1_g000001 Rmu_sc0000054.1_g000031 Rmu_sc0000054.1_g000033 Rmu_sc0000200.1_g000002 Rmu_sc0000200.1_g000007 Rmu_sc0000200.1_g000018 Rmu_sc0000200.1_g000020 Rmu_sc0000200.1_g000021 Rmu_sc0000251.1_g000012 Rmu_sc0000251.1_g000015 Rmu_sc0000251.1_g000028 Rmu_sc0000253.1_g000015 Rmu_sc0000255.1_g000045 Rmu_sc0000255.1_g000046 Rmu_sc0001292.1_g000013 Rmu_sc0001292.1_g000018 Rmu_sc0001292.1_g000028 Rmu_sc0001292.1_g000029 Rmu_sc0001349.1_g000006 Rmu_sc0001349.1_g000014 Rmu_sc0001582.1_g000006 Rmu_sc0001582.1_g000018 Rmu_sc0001582.1_g000020 Rmu_sc0001692.1_g000007 Rmu_sc0001692.1_g000024 Rmu_sc0001692.1_g000026 Rmu_sc0001692.1_g000029 Rmu_sc0001692.1_g000030 Rmu_sc0001835.1_g000006 Rmu_sc0001835.1_g000010 Rmu_sc0002071.1_g000005 Rmu_sc0002276.1_g000002 Rmu_sc0002276.1_g000009 Rmu_sc0002329.1_g000018 Rmu_sc0002329.1_g000023 Rmu_sc0002329.1_g000025 Rmu_sc0002523.1_g000005 Rmu_sc0003573.1_g000005 Rmu_sc0003573.1_g000006 Rmu_sc0004099.1_g000021 Rmu_sc0005812.1_g000009 Rmu_sc0006271.1_g000002 Rmu_sc0006287.1_g000038 Rmu_sc0006439.1_g000008 Rmu_sc0007456.1_g000004 Rmu_sc0007581.1_g000009 Rmu_sc0007849.1_g000014 Rmu_sc0008115.1_g000012 Rmu_sc0010521.1_g000004 Rmu_sc0012471.1_g000017 Rmu_sc0014762.1_g000001 Rmu_sc0015150.1_g000003 Rmu_sc0017221.1_g000001 Rmu_sc0017299.1_g000001 Rmu_sc0017299.1_g000002 Rmu_sc0021457.1_g000001 Rmu_sc0022067.1_g000001 Rmu_sc0033275.1_g000001 Rmu_ssc0000245.1_g000012 Rmu_ssc0000359.1_g000035 Rmu_ssc0000359.1_g000067 Rmu_ssc0000359.1_g000072 Rmu_ssc0000434.1_g000005 Rmu_ssc0000434.1_g000007
rosa_roxburghii Rroxscaffold_4G00298420 Rroxscaffold_4G00298720 Rroxscaffold_4G00308990 Rroxscaffold_4G00309000 Rroxscaffold_4G00309010 Rroxscaffold_4G00309050 Rroxscaffold_4G00309070 Rroxscaffold_4G00309100 Rroxscaffold_4G00310030 Rroxscaffold_4G00310050 Rroxscaffold_4G00311880 Rroxscaffold_5G00339420 Rroxscaffold_5G00339450 Rroxscaffold_5G00344880 Rroxscaffold_5G00352270 Rroxscaffold_5G00362240 Rroxscaffold_5G00370840 Rroxscaffold_7G00202970
rosa_rugosa Rorug01G0159100.1 Rorug01G0159200.1 Rorug01G0171700 Rorug01G0171900 Rorug01G0172000 Rorug01G0191700 Rorug01G0191800 Rorug01G0256900 Rorug01G0257000 Rorug01G0257100 Rorug03G0198000 Rorug03G0366300.1 Rorug03G0366400.1 Rorug03G0366500.1 Rorug04G0081200 Rorug04G0081200 Rorug04G0081200 Rorug04G0233700 Rorug04G0233800 Rorug04G0233800 Rorug06G0013300
rosa_samantha Rh1CG138800 Rh1CG161300 Rh1CG173800 Rh1CG179800 Rh1CG180100 Rh1CG180500 Rh1CG180800 Rh1CG180900 Rh1CG194100 Rh1DG205100 Rh3AG236300 Rh4AG052000 Rh4AG052100 Rh4AG145900 Rh4AG289700 Rh4AG289800 Rh6AG136800 Rh6AG137300 Rh6BG133600 Rh6CG132000 Rh6CG134000 Rh6DG119300
rosa_wichuraiana Rw0G003420 Rw1G015500 Rw1G016110 Rw1G016180 Rw1G016210 Rw1G016230 Rw1G016280 Rw1G016440 Rw1G016450 Rw1G016460 Rw1G016480 Rw1G017490 Rw1G024140 Rw1G024160 Rw3G022530 Rw4G004140 Rw4G004190 Rw4G011850 Rw6G011800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 629, 2048
AarI CACCTGC 1 cut(s) 2099
Acc36I ACCTGC 1 cut(s) 2099
AccB7I CCANNNNNTGG 1 cut(s) 869
AccBSI CCGCTC 1 cut(s) 139
AccI GTMKAC 2 cut(s) 382, 432
AciI CCGC 4 cut(s) 139, 762, 1198, 2165
AclWI GGATC 2 cut(s) 582, 1231
AcsI RAATTY 4 cut(s) 663, 814, 1073, 1808
AcuI CTGAAG 5 cut(s) 1070, 1148, 1862, 1916, 2193
AcyI GRCGYC 1 cut(s) 1309
AdeI CACNNNGTG 1 cut(s) 1823
AfaI GTAC 5 cut(s) 330, 414, 1176, 1681, 1920
AfiI CCNNNNNNNGG 5 cut(s) 235, 869, 898, 978, 1731
AflIII ACRYGT 2 cut(s) 1479, 2032
AjnI CCWGG 2 cut(s) 1641, 1743
AjuI GAANNNNNNNTTGG 2 cut(s) 1252, 1284
AluBI AGCT 6 cut(s) 110, 234, 1453, 1534, 1639, 2198
AluI AGCT 6 cut(s) 110, 234, 1453, 1534, 1639, 2198
Alw21I GWGCWC 2 cut(s) 366, 1641
Alw26I GTCTC 5 cut(s) 383, 770, 777, 960, 2121
AlwI GGATC 2 cut(s) 582, 1231
AlwNI CAGNNNCTG 1 cut(s) 1366
Ama87I CYCGRG 1 cut(s) 2118
ApeKI GCWGC 3 cut(s) 1720, 2105, 2198
ApoI RAATTY 4 cut(s) 663, 814, 1073, 1808
AspA2I CCTAGG 1 cut(s) 1786
AspS9I GGNCC 2 cut(s) 28, 64
AsuHPI GGTGA 3 cut(s) 763, 1382, 1651
AsuII TTCGAA 2 cut(s) 880, 1056
AvaI CYCGRG 1 cut(s) 2118
AvaII GGWCC 2 cut(s) 28, 64
AvrII CCTAGG 1 cut(s) 1786
AxyI CCTNAGG 1 cut(s) 570
BanII GRGCYC 1 cut(s) 1641
BbsI GAAGAC 3 cut(s) 365, 889, 1868
Bbv12I GWGCWC 2 cut(s) 366, 1641
BbvI GCAGC 3 cut(s) 1707, 2117, 2185
BccI CCATC 5 cut(s) 362, 535, 926, 1162, 1919
BcgI CGANNNNNNTGC 2 cut(s) 771, 805
BciT130I CCWGG 2 cut(s) 1643, 1745
BciVI GTATCC 1 cut(s) 47
BclI TGATCA 1 cut(s) 193
BcoDI GTCTC 5 cut(s) 383, 770, 777, 960, 2121
BfaI CTAG 6 cut(s) 218, 692, 1103, 1190, 1787, 1872
BfmI CTRYAG 1 cut(s) 1987
BfuAI ACCTGC 1 cut(s) 2099
BfuI GTATCC 1 cut(s) 47
BglII AGATCT 2 cut(s) 710, 1192
BisI GCNGC 3 cut(s) 1721, 2106, 2199
BlnI CCTAGG 1 cut(s) 1786
BlsI GCNGC 3 cut(s) 1722, 2107, 2200
BmcAI AGTACT 1 cut(s) 414
Bme1390I CCNGG 2 cut(s) 1643, 1745
Bme18I GGWCC 2 cut(s) 28, 64
BmeT110I CYCGRG 1 cut(s) 2118
BmgT120I GGNCC 2 cut(s) 28, 64
BmiI GGNNCC 1 cut(s) 2088
BmrFI CCNGG 2 cut(s) 1643, 1745
BmsI GCATC 6 cut(s) 312, 397, 1519, 1707, 1744, 2210
BpiI GAAGAC 3 cut(s) 365, 889, 1868
Bpu14I TTCGAA 2 cut(s) 880, 1056
BpuEI CTTGAG 3 cut(s) 69, 1132, 1934
BsaBI GATNNNNATC 1 cut(s) 1522
BsaHI GRCGYC 1 cut(s) 1309
BsaI GGTCTC 2 cut(s) 770, 960
BsaJI CCNNGG 4 cut(s) 1304, 1642, 1744, 1786
BsaWI WCCGGW 1 cut(s) 58
BsaXI ACNNNNNCTCC 2 cut(s) 876, 906
Bsc4I CCNNNNNNNGG 5 cut(s) 235, 869, 898, 978, 1731
Bse1I ACTGG 2 cut(s) 852, 1977
Bse21I CCTNAGG 1 cut(s) 570
Bse8I GATNNNNATC 1 cut(s) 1522
BseBI CCWGG 2 cut(s) 1643, 1745
BseDI CCNNGG 4 cut(s) 1304, 1642, 1744, 1786
BseGI GGATG 3 cut(s) 16, 412, 2201
BseJI GATNNNNATC 1 cut(s) 1522
BseLI CCNNNNNNNGG 5 cut(s) 235, 869, 898, 978, 1731
BseMII CTCAG 5 cut(s) 561, 1112, 1277, 1679, 2130
BseNI ACTGG 2 cut(s) 852, 1977
BseRI GAGGAG 2 cut(s) 824, 2151
BseXI GCAGC 3 cut(s) 1707, 2117, 2185
BseYI CCCAGC 2 cut(s) 234, 1366
Bsh1285I CGRYCG 1 cut(s) 1520
BsiEI CGRYCG 1 cut(s) 1520
BsiHKAI GWGCWC 2 cut(s) 366, 1641
BsiHKCI CYCGRG 1 cut(s) 2118
BsiSI CCGG 1 cut(s) 59
BslFI GGGAC 1 cut(s) 858
BslI CCNNNNNNNGG 5 cut(s) 235, 869, 898, 978, 1731
BsmAI GTCTC 5 cut(s) 383, 770, 777, 960, 2121
BsmBI CGTCTC 2 cut(s) 383, 2121
BsmFI GGGAC 1 cut(s) 858
BsmI GAATGC 1 cut(s) 97
Bso31I GGTCTC 2 cut(s) 770, 960
BsoBI CYCGRG 1 cut(s) 2118
Bsp119I TTCGAA 2 cut(s) 880, 1056
Bsp1286I GDGCHC 2 cut(s) 366, 1641
Bsp1407I TGTACA 1 cut(s) 328
Bsp143I GATC 9 cut(s) 193, 574, 710, 1013, 1192, 1223, 1372, 1402, 1517
BspACI CCGC 4 cut(s) 139, 762, 1198, 2165
BspCNI CTCAG 5 cut(s) 562, 1113, 1278, 1680, 2131
BspHI TCATGA 1 cut(s) 577
BspLI GGNNCC 1 cut(s) 2088
BspMAI CTGCAG 1 cut(s) 1991
BspMI ACCTGC 1 cut(s) 2099
BspPI GGATC 2 cut(s) 582, 1231
BspQI GCTCTTC 1 cut(s) 1629
BspT104I TTCGAA 2 cut(s) 880, 1056
BspTNI GGTCTC 2 cut(s) 770, 960
BsrBI CCGCTC 1 cut(s) 139
BsrGI TGTACA 1 cut(s) 328
BsrI ACTGG 2 cut(s) 852, 1977
BssECI CCNNGG 4 cut(s) 1304, 1642, 1744, 1786
BssMI GATC 9 cut(s) 193, 574, 710, 1013, 1192, 1223, 1372, 1402, 1517
BssNAI GTATAC 1 cut(s) 433
BssNI GRCGYC 1 cut(s) 1309
BssT1I CCWWGG 2 cut(s) 1304, 1786
Bst1107I GTATAC 1 cut(s) 433
Bst2UI CCWGG 2 cut(s) 1643, 1745
Bst4CI ACNGT 2 cut(s) 243, 2152
Bst6I CTCTTC 4 cut(s) 296, 801, 931, 1629
BstACI GRCGYC 1 cut(s) 1309
BstAPI GCANNNNNTGC 1 cut(s) 2111
BstAUI TGTACA 1 cut(s) 328
BstBI TTCGAA 2 cut(s) 880, 1056
BstC8I GCNNGC 3 cut(s) 180, 366, 794
BstF5I GGATG 3 cut(s) 16, 412, 2201
BstKTI GATC 9 cut(s) 196, 577, 713, 1016, 1195, 1226, 1375, 1405, 1520
BstMAI GTCTC 5 cut(s) 383, 770, 777, 960, 2121
BstMBI GATC 9 cut(s) 193, 574, 710, 1013, 1192, 1223, 1372, 1402, 1517
BstMCI CGRYCG 1 cut(s) 1520
BstMWI GCNNNNNNNGC 3 cut(s) 179, 1288, 2111
BstNI CCWGG 2 cut(s) 1643, 1745
BstNSI RCATGY 3 cut(s) 653, 1483, 2036
BstSCI CCNGG 2 cut(s) 1641, 1743
BstSFI CTRYAG 1 cut(s) 1987
BstV1I GCAGC 3 cut(s) 1707, 2117, 2185
BstV2I GAAGAC 3 cut(s) 365, 889, 1868
BstX2I RGATCY 3 cut(s) 710, 1192, 1223
BstYI RGATCY 3 cut(s) 710, 1192, 1223
BstZ17I GTATAC 1 cut(s) 433
Bsu36I CCTNAGG 1 cut(s) 570
BsuI GTATCC 1 cut(s) 47
BtgZI GCGATG 1 cut(s) 272
BtsCI GGATG 3 cut(s) 16, 412, 2201
BveI ACCTGC 1 cut(s) 2099
Cac8I GCNNGC 3 cut(s) 180, 366, 794
CaiI CAGNNNCTG 1 cut(s) 1366
CciI TCATGA 1 cut(s) 577
Cfr13I GGNCC 2 cut(s) 28, 64
CseI GACGC 4 cut(s) 1298, 1372, 2103, 2165
Csp6I GTAC 5 cut(s) 329, 413, 1175, 1680, 1919
CviAII CATG 5 cut(s) 578, 650, 770, 1480, 2033
CviQI GTAC 5 cut(s) 329, 413, 1175, 1680, 1919
DpnI GATC 9 cut(s) 195, 576, 712, 1015, 1194, 1225, 1374, 1404, 1519
DpnII GATC 9 cut(s) 193, 574, 710, 1013, 1192, 1223, 1372, 1402, 1517
DraIII CACNNNGTG 1 cut(s) 1823
Eam1104I CTCTTC 4 cut(s) 296, 801, 931, 1629
EarI CTCTTC 4 cut(s) 296, 801, 931, 1629
EciI GGCGGA 1 cut(s) 2154
Ecl136II GAGCTC 1 cut(s) 1639
Eco130I CCWWGG 2 cut(s) 1304, 1786
Eco24I GRGCYC 1 cut(s) 1641
Eco31I GGTCTC 2 cut(s) 770, 960
Eco32I GATATC 1 cut(s) 1488
Eco47I GGWCC 2 cut(s) 28, 64
Eco53kI GAGCTC 1 cut(s) 1639
Eco57I CTGAAG 5 cut(s) 1070, 1148, 1862, 1916, 2193
Eco81I CCTNAGG 1 cut(s) 570
Eco88I CYCGRG 1 cut(s) 2118
EcoICRI GAGCTC 1 cut(s) 1639
EcoRII CCWGG 2 cut(s) 1641, 1743
EcoRV GATATC 1 cut(s) 1488
EcoT14I CCWWGG 2 cut(s) 1304, 1786
EcoT22I ATGCAT 1 cut(s) 651
EcoT38I GRGCYC 1 cut(s) 1641
ErhI CCWWGG 2 cut(s) 1304, 1786
Esp3I CGTCTC 2 cut(s) 383, 2121
FaeI CATG 5 cut(s) 581, 653, 773, 1483, 2036
FalI AAGNNNNNCTT 2 cut(s) 1570, 1602
FaqI GGGAC 1 cut(s) 858
FatI CATG 5 cut(s) 577, 649, 769, 1479, 2032
FauNDI CATATG 2 cut(s) 77, 1504
FbaI TGATCA 1 cut(s) 193
FblI GTMKAC 2 cut(s) 382, 432
Fnu4HI GCNGC 3 cut(s) 1721, 2106, 2199
FokI GGATG 3 cut(s) 23, 419, 2188
FriOI GRGCYC 1 cut(s) 1641
Fsp4HI GCNGC 3 cut(s) 1721, 2106, 2199
FspBI CTAG 6 cut(s) 218, 692, 1103, 1190, 1787, 1872
GluI GCNGC 3 cut(s) 1721, 2106, 2199
GsaI CCCAGC 2 cut(s) 238, 1370
HapII CCGG 1 cut(s) 59
HgaI GACGC 4 cut(s) 1298, 1372, 2103, 2165
Hin1I GRCGYC 1 cut(s) 1309
Hin1II CATG 5 cut(s) 581, 653, 773, 1483, 2036
HinfI GANTC 8 cut(s) 82, 114, 1099, 1123, 1254, 1983, 2135, 2144
HpaII CCGG 1 cut(s) 59
HphI GGTGA 3 cut(s) 763, 1382, 1651
Hpy166II GTNNAC 6 cut(s) 344, 383, 433, 1108, 1325, 2155
Hpy188I TCNGA 8 cut(s) 643, 824, 1050, 1122, 1128, 1259, 1881, 2140
Hpy8I GTNNAC 6 cut(s) 344, 383, 433, 1108, 1325, 2155
HpyAV CCTTC 5 cut(s) 614, 742, 1214, 2000, 2049
HpyCH4III ACNGT 2 cut(s) 243, 2152
HpyCH4IV ACGT 1 cut(s) 638
HpyF10VI GCNNNNNNNGC 3 cut(s) 179, 1288, 2111
HpySE526I ACGT 1 cut(s) 638
Hsp92I GRCGYC 1 cut(s) 1309
Hsp92II CATG 5 cut(s) 581, 653, 773, 1483, 2036
Ksp22I TGATCA 1 cut(s) 193
Kzo9I GATC 9 cut(s) 193, 574, 710, 1013, 1192, 1223, 1372, 1402, 1517
LguI GCTCTTC 1 cut(s) 1629
LmnI GCTCC 4 cut(s) 1279, 1644, 2086, 2164
Lsp1109I GCAGC 3 cut(s) 1707, 2117, 2185
LweI GCATC 6 cut(s) 312, 397, 1519, 1707, 1744, 2210
MaeI CTAG 6 cut(s) 218, 692, 1103, 1190, 1787, 1872
MaeII ACGT 1 cut(s) 638
MaeIII GTNAC 4 cut(s) 1080, 1310, 1457, 1694
MalI GATC 9 cut(s) 195, 576, 712, 1015, 1194, 1225, 1374, 1404, 1519
MbiI CCGCTC 1 cut(s) 139
MboI GATC 9 cut(s) 193, 574, 710, 1013, 1192, 1223, 1372, 1402, 1517
MfeI CAATTG 2 cut(s) 1380, 1907
MflI RGATCY 3 cut(s) 710, 1192, 1223
MhlI GDGCHC 2 cut(s) 366, 1641
MlyI GAGTC 3 cut(s) 76, 1132, 2129
MmeI TCCRAC 1 cut(s) 64
Mph1103I ATGCAT 1 cut(s) 651
MslI CAYNNNNRTG 1 cut(s) 359
MspI CCGG 1 cut(s) 59
MspR9I CCNGG 2 cut(s) 1643, 1745
MunI CAATTG 2 cut(s) 1380, 1907
Mva1269I GAATGC 1 cut(s) 97
MvaI CCWGG 2 cut(s) 1643, 1745
MwoI GCNNNNNNNGC 3 cut(s) 179, 1288, 2111
NdeI CATATG 2 cut(s) 77, 1504
NdeII GATC 9 cut(s) 193, 574, 710, 1013, 1192, 1223, 1372, 1402, 1517
NlaIII CATG 5 cut(s) 581, 653, 773, 1483, 2036
NlaIV GGNNCC 1 cut(s) 2088
NmuCI GTSAC 3 cut(s) 1310, 1457, 1694
NsiI ATGCAT 1 cut(s) 651
NspI RCATGY 3 cut(s) 653, 1483, 2036
NspV TTCGAA 2 cut(s) 880, 1056
PaeR7I CTCGAG 1 cut(s) 2118
PagI TCATGA 1 cut(s) 577
PaqCI CACCTGC 1 cut(s) 2099
PciI ACATGT 2 cut(s) 1479, 2032
PciSI GCTCTTC 1 cut(s) 1629
PctI GAATGC 1 cut(s) 97
PfeI GAWTC 5 cut(s) 114, 1099, 1254, 1983, 2144
PflMI CCANNNNNTGG 1 cut(s) 869
PkrI GCNGC 3 cut(s) 1722, 2107, 2200
Ple19I CGATCG 1 cut(s) 1520
PleI GAGTC 3 cut(s) 76, 1131, 2129
PpsI GAGTC 3 cut(s) 76, 1131, 2129
PscI ACATGT 2 cut(s) 1479, 2032
PsiI TTATAA 2 cut(s) 629, 2048
Psp124BI GAGCTC 1 cut(s) 1641
Psp6I CCWGG 2 cut(s) 1641, 1743
PspFI CCCAGC 2 cut(s) 234, 1366
PspGI CCWGG 2 cut(s) 1641, 1743
PspN4I GGNNCC 1 cut(s) 2088
PspPI GGNCC 2 cut(s) 28, 64
PstI CTGCAG 1 cut(s) 1991
PstNI CAGNNNCTG 1 cut(s) 1366
PsuI RGATCY 3 cut(s) 710, 1192, 1223
PvuI CGATCG 1 cut(s) 1520
RsaI GTAC 5 cut(s) 330, 414, 1176, 1681, 1920
RsaNI GTAC 5 cut(s) 329, 413, 1175, 1680, 1919
RseI CAYNNNNRTG 1 cut(s) 359
SacI GAGCTC 1 cut(s) 1641
SapI GCTCTTC 1 cut(s) 1629
SatI GCNGC 3 cut(s) 1721, 2106, 2199
Sau3AI GATC 9 cut(s) 193, 574, 710, 1013, 1192, 1223, 1372, 1402, 1517
Sau96I GGNCC 2 cut(s) 28, 64
ScaI AGTACT 1 cut(s) 414
SchI GAGTC 3 cut(s) 76, 1132, 2129
ScrFI CCNGG 2 cut(s) 1643, 1745
SduI GDGCHC 2 cut(s) 366, 1641
SfaNI GCATC 6 cut(s) 312, 397, 1519, 1707, 1744, 2210
SfcI CTRYAG 1 cut(s) 1987
Sfr274I CTCGAG 1 cut(s) 2118
SfuI TTCGAA 2 cut(s) 880, 1056
SinI GGWCC 2 cut(s) 28, 64
SlaI CTCGAG 1 cut(s) 2118
SmiMI CAYNNNNRTG 1 cut(s) 359
SmlI CTYRAG 4 cut(s) 84, 1111, 1949, 2118
SmoI CTYRAG 4 cut(s) 84, 1111, 1949, 2118
SsiI CCGC 4 cut(s) 139, 762, 1198, 2165
SspMI CTAG 6 cut(s) 218, 692, 1103, 1190, 1787, 1872
SstI GAGCTC 1 cut(s) 1641
StyD4I CCNGG 2 cut(s) 1641, 1743
StyI CCWWGG 2 cut(s) 1304, 1786
TaaI ACNGT 2 cut(s) 243, 2152
TaiI ACGT 1 cut(s) 641
TaqI TCGA 6 cut(s) 101, 211, 880, 1056, 1516, 2119
TatI WGTACW 3 cut(s) 328, 412, 1679
TfiI GAWTC 5 cut(s) 114, 1099, 1254, 1983, 2144
TseFI GTSAC 3 cut(s) 1310, 1457, 1694
TseI GCWGC 3 cut(s) 1720, 2105, 2198
Tsp45I GTSAC 3 cut(s) 1310, 1457, 1694
TspDTI ATGAA 4 cut(s) 17, 27, 594, 1233
TspGWI ACGGA 2 cut(s) 20, 1637
Van91I CCANNNNNTGG 1 cut(s) 869
VpaK11BI GGWCC 2 cut(s) 28, 64
XapI RAATTY 4 cut(s) 663, 814, 1073, 1808
XbaI TCTAGA 1 cut(s) 1189
XceI RCATGY 3 cut(s) 653, 1483, 2036
XcmI CCANNNNNNNNNTGG 1 cut(s) 1669
XhoI CTCGAG 1 cut(s) 2118
XmaJI CCTAGG 1 cut(s) 1786
XmiI GTMKAC 2 cut(s) 382, 432
XspI CTAG 6 cut(s) 218, 692, 1103, 1190, 1787, 1872
ZrmI AGTACT 1 cut(s) 414
Zsp2I ATGCAT 1 cut(s) 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.