Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000069

Physical Location & Seq

Genomic Coordinates Reverse (-)

29023572 .. 29024149

Gene Structure 578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028837

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGTTTTCTCCCAAGGAGGCTTTCCTCATCTGGAATTTCTTACCCTTAAAGCTGTAGATGATTTGAAGGACTGGAGGGTGGAGAAAGAAGCCATGCCTAGTCTTCAGAGATTGCGCATTGATTGGTGCGACCAATTGCGGGCTATTCCAGATGGGCTTCAGGATATTACTACCCTCAAGGAATTAACAATTAACAGGATGTACAGTACATTCTGTCATAGGGTCAGGGAAGGAGGAGAGGATTTCTACAAAATCAAGCATGTGCCTTCTCTTATAATCACAAATATTCGAACGCACTACAATTTCGACAAGGAGCCAGAAATGGAGGAAGCTGCAGGGGCGTCCCAAGTAGTTACGGGTCCAGTCGTTGACTCTCATCAGGAATTGACTGTGGAGGCTCCTCCTCCTCCTCACGATAAAACAGAGGAAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0002230 GO:0002238 GO:0002239 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009615 GO:0009620 GO:0009626 GO:0009628 GO:0009637 GO:0009642 GO:0009646 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0012501 GO:0014070 GO:0016020 GO:0023052 GO:0030054 GO:0031347 GO:0032101 GO:0032870 GO:0033554 GO:0034050 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0043207 GO:0043900 GO:0044464 GO:0045087 GO:0046677 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071944 GO:0080134 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

145

Amino Acids

16.53

Weight (kDa)

5.07

Isoelectric Point (pI)

53.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G50180 AT1G53350 AT1G58390 AT1G58390 AT1G58400 AT1G58400 AT1G58400 AT1G58410 AT1G58410 AT1G58410 AT1G58410 AT1G58602 AT1G58602 AT1G58807 AT1G58807 AT1G58848 AT1G58848 AT1G59124 AT1G59124 AT1G59218 AT1G59218 AT1G59218 AT1G59620 AT1G59780 AT1G59780 AT5G35450 AT5G35450 AT5G43470 AT5G43470 AT5G43470 AT5G43470 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620
fragaria_vesca	FvH4_4g04072 FvH4_4g22931 FvH4_4g22931 FvH4_4g22940 FvH4_6g49940 FvH4_6g49940 FvH4_7g08100 FvH4_7g08870 FvH4_7g08870 FvH4_7g09280 FvH4_7g09290 FvH4_7g15190 FvH4_7g15200 FvH4_7g15240 FvH4_7g15240 FvH4_7g33440
malus_domestica	MD00G1174600.v1.1 MD01G1113700.v1.1 MD03G1071300.v1.1 MD04G1041500.v1.1 MD04G1238000.v1.1 MD07G1029000.v1.1 MD07G1092100.v1.1 MD07G1092300.v1.1 MD07G1092600.v1.1 MD12G1256300.v1.1 MD13G1128200.v1.1 MD13G1128400.v1.1 MD17G1268000.v1.1
prunus_persica	Prupe.1G041300_v2.0.a1 Prupe.1G041300_v2.0.a1 Prupe.1G042900_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043600_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G046700_v2.0.a1 Prupe.1G047700_v2.0.a1 Prupe.1G047900_v2.0.a1 Prupe.1G048000_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G049900_v2.0.a1 Prupe.1G051500_v2.0.a1 Prupe.1G051800_v2.0.a1 Prupe.1G051900_v2.0.a1 Prupe.1G052200_v2.0.a1 Prupe.1G194900_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117300_v2.0.a1 Prupe.2G117400_v2.0.a1 Prupe.2G117500_v2.0.a1 Prupe.2G117700_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G119900_v2.0.a1
pyrus_communis	pycom03g05750 pycom04g21110 pycom07g07530 pycom07g07590 pycom13g11110 pycom13g11140 pycom13g11160 pycom13g11170 pycom17g26680
rosa_chinensis	RchiOBHm_Chr1g0341231 RchiOBHm_Chr1g0344091 RchiOBHm_Chr1g0344161 RchiOBHm_Chr1g0345001 RchiOBHm_Chr1g0345351 RchiOBHm_Chr1g0345371 RchiOBHm_Chr1g0345391 RchiOBHm_Chr1g0345531 RchiOBHm_Chr1g0345551 RchiOBHm_Chr1g0345571 RchiOBHm_Chr1g0345581 RchiOBHm_Chr1g0345661 RchiOBHm_Chr1g0345691 RchiOBHm_Chr1g0345761 RchiOBHm_Chr1g0345791 RchiOBHm_Chr1g0345821 RchiOBHm_Chr1g0345911 RchiOBHm_Chr1g0345941 RchiOBHm_Chr1g0357611 RchiOBHm_Chr1g0357911 RchiOBHm_Chr1g0357921 RchiOBHm_Chr1g0357931 RchiOBHm_Chr1g0357971 RchiOBHm_Chr1g0358121 RchiOBHm_Chr1g0383491 RchiOBHm_Chr1g0383511 RchiOBHm_Chr1g0383521 RchiOBHm_Chr3g0480581 RchiOBHm_Chr4g0394341 RchiOBHm_Chr4g0394361 RchiOBHm_Chr4g0394411 RchiOBHm_Chr4g0394441 RchiOBHm_Chr4g0407681 RchiOBHm_Chr4g0429191 RchiOBHm_Chr4g0429201 RchiOBHm_Chr4g0429211 RchiOBHm_Chr4g0429221 RchiOBHm_Chr6g0265091
rosa_laevigata	RLG00000007088 RLG00000008700 RLG00000009190 RLG00000009702 RLG00000014210 RLG00000028829 RLG00000028833 RLG00000028837 RLG00000028838 RLG00000028921 RLG00000028926
rosa_multiflora	Rmu_co8366955.1_g000001 Rmu_co8394205.1_g000001 Rmu_sc0000019.1_g000001 Rmu_sc0000054.1_g000031 Rmu_sc0000054.1_g000033 Rmu_sc0000200.1_g000002 Rmu_sc0000200.1_g000007 Rmu_sc0000200.1_g000018 Rmu_sc0000200.1_g000020 Rmu_sc0000200.1_g000021 Rmu_sc0000251.1_g000012 Rmu_sc0000251.1_g000015 Rmu_sc0000251.1_g000028 Rmu_sc0000253.1_g000015 Rmu_sc0000255.1_g000045 Rmu_sc0000255.1_g000046 Rmu_sc0001292.1_g000013 Rmu_sc0001292.1_g000018 Rmu_sc0001292.1_g000028 Rmu_sc0001292.1_g000029 Rmu_sc0001349.1_g000006 Rmu_sc0001349.1_g000014 Rmu_sc0001582.1_g000006 Rmu_sc0001582.1_g000018 Rmu_sc0001582.1_g000020 Rmu_sc0001692.1_g000007 Rmu_sc0001692.1_g000024 Rmu_sc0001692.1_g000026 Rmu_sc0001692.1_g000029 Rmu_sc0001692.1_g000030 Rmu_sc0001835.1_g000006 Rmu_sc0001835.1_g000010 Rmu_sc0002071.1_g000005 Rmu_sc0002276.1_g000002 Rmu_sc0002276.1_g000009 Rmu_sc0002329.1_g000018 Rmu_sc0002329.1_g000023 Rmu_sc0002329.1_g000025 Rmu_sc0002523.1_g000005 Rmu_sc0003573.1_g000005 Rmu_sc0003573.1_g000006 Rmu_sc0004099.1_g000021 Rmu_sc0005812.1_g000009 Rmu_sc0006271.1_g000002 Rmu_sc0006287.1_g000038 Rmu_sc0006439.1_g000008 Rmu_sc0007456.1_g000004 Rmu_sc0007581.1_g000009 Rmu_sc0007849.1_g000014 Rmu_sc0008115.1_g000012 Rmu_sc0010521.1_g000004 Rmu_sc0012471.1_g000017 Rmu_sc0014762.1_g000001 Rmu_sc0015150.1_g000003 Rmu_sc0017221.1_g000001 Rmu_sc0017299.1_g000001 Rmu_sc0017299.1_g000002 Rmu_sc0021457.1_g000001 Rmu_sc0022067.1_g000001 Rmu_sc0033275.1_g000001 Rmu_ssc0000245.1_g000012 Rmu_ssc0000359.1_g000035 Rmu_ssc0000359.1_g000067 Rmu_ssc0000359.1_g000072 Rmu_ssc0000434.1_g000005 Rmu_ssc0000434.1_g000007
rosa_roxburghii	Rroxscaffold_4G00298420 Rroxscaffold_4G00298720 Rroxscaffold_4G00308990 Rroxscaffold_4G00309000 Rroxscaffold_4G00309010 Rroxscaffold_4G00309050 Rroxscaffold_4G00309070 Rroxscaffold_4G00309100 Rroxscaffold_4G00310030 Rroxscaffold_4G00310050 Rroxscaffold_4G00311880 Rroxscaffold_5G00339420 Rroxscaffold_5G00339450 Rroxscaffold_5G00344880 Rroxscaffold_5G00352270 Rroxscaffold_5G00362240 Rroxscaffold_5G00370840 Rroxscaffold_7G00202970
rosa_rugosa	Rorug01G0159100.1 Rorug01G0159200.1 Rorug01G0171700 Rorug01G0171900 Rorug01G0172000 Rorug01G0191700 Rorug01G0191800 Rorug01G0256900 Rorug01G0257000 Rorug01G0257100 Rorug03G0198000 Rorug03G0366300.1 Rorug03G0366400.1 Rorug03G0366500.1 Rorug04G0081200 Rorug04G0081200 Rorug04G0081200 Rorug04G0233700 Rorug04G0233800 Rorug04G0233800 Rorug06G0013300
rosa_samantha	Rh1CG138800 Rh1CG161300 Rh1CG173800 Rh1CG179800 Rh1CG180100 Rh1CG180500 Rh1CG180800 Rh1CG180900 Rh1CG194100 Rh1DG205100 Rh3AG236300 Rh4AG052000 Rh4AG052100 Rh4AG145900 Rh4AG289700 Rh4AG289800 Rh6AG136800 Rh6AG137300 Rh6BG133600 Rh6CG132000 Rh6CG134000 Rh6DG119300
rosa_wichuraiana	Rw0G003420 Rw1G015500 Rw1G016110 Rw1G016180 Rw1G016210 Rw1G016230 Rw1G016280 Rw1G016440 Rw1G016450 Rw1G016460 Rw1G016480 Rw1G017490 Rw1G024140 Rw1G024160 Rw3G022530 Rw4G004140 Rw4G004190 Rw4G011850 Rw6G011800

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	275
Acc16I	TGCGCA	1 cut(s)	116
AciI	CCGC	1 cut(s)	139
AcsI	RAATTY	1 cut(s)	35
AcuI	CTGAAG	2 cut(s)	89, 143
AcyI	GRCGYC	1 cut(s)	341
AfaI	GTAC	2 cut(s)	203, 208
AfiI	CCNNNNNNNGG	1 cut(s)	139
AgsI	TTSAA	1 cut(s)	67
AjuI	GAANNNNNNNTTGG	1 cut(s)	38
AluBI	AGCT	2 cut(s)	53, 332
AluI	AGCT	2 cut(s)	53, 332
ApeKI	GCWGC	1 cut(s)	332
ApoI	RAATTY	1 cut(s)	35
AspLEI	GCGC	1 cut(s)	117
AspS9I	GGNCC	1 cut(s)	359
AsuII	TTCGAA	1 cut(s)	289
AvaII	GGWCC	1 cut(s)	359
BbsI	GAAGAC	1 cut(s)	95
BbvI	GCAGC	1 cut(s)	319
BccI	CCATC	1 cut(s)	146
BfaI	CTAG	1 cut(s)	99
BfmI	CTRYAG	2 cut(s)	54, 333
BisI	GCNGC	1 cut(s)	333
BlsI	GCNGC	1 cut(s)	334
Bme18I	GGWCC	1 cut(s)	359
BmgT120I	GGNCC	1 cut(s)	359
BmiI	GGNNCC	3 cut(s)	315, 360, 399
BpiI	GAAGAC	1 cut(s)	95
BpmI	CTGGAG	1 cut(s)	94
Bpu14I	TTCGAA	1 cut(s)	289
BpuEI	CTTGAG	1 cut(s)	161
BsaHI	GRCGYC	1 cut(s)	341
BsaJI	CCNNGG	1 cut(s)	13
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
Bse1I	ACTGG	2 cut(s)	77, 362
BseDI	CCNNGG	1 cut(s)	13
BseGI	GGATG	1 cut(s)	204
BseLI	CCNNNNNNNGG	1 cut(s)	139
BseNI	ACTGG	2 cut(s)	77, 362
BseRI	GAGGAG	5 cut(s)	249, 390, 393, 396, 399
BseXI	GCAGC	1 cut(s)	319
BslFI	GGGAC	1 cut(s)	328
BslI	CCNNNNNNNGG	1 cut(s)	139
BsmFI	GGGAC	1 cut(s)	328
Bsp119I	TTCGAA	1 cut(s)	289
Bsp1407I	TGTACA	1 cut(s)	201
BspACI	CCGC	1 cut(s)	139
BspLI	GGNNCC	3 cut(s)	315, 360, 399
BspMAI	CTGCAG	1 cut(s)	337
BspT104I	TTCGAA	1 cut(s)	289
BsrGI	TGTACA	1 cut(s)	201
BsrI	ACTGG	2 cut(s)	77, 362
BssECI	CCNNGG	1 cut(s)	13
BssNI	GRCGYC	1 cut(s)	341
BssT1I	CCWWGG	1 cut(s)	13
Bst4CI	ACNGT	2 cut(s)	206, 391
BstACI	GRCGYC	1 cut(s)	341
BstAUI	TGTACA	1 cut(s)	201
BstBI	TTCGAA	1 cut(s)	289
BstC8I	GCNNGC	1 cut(s)	141
BstF5I	GGATG	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	117
BstMWI	GCNNNNNNNGC	1 cut(s)	338
BstNSI	RCATGY	1 cut(s)	263
BstSFI	CTRYAG	2 cut(s)	54, 333
BstV1I	GCAGC	1 cut(s)	319
BstV2I	GAAGAC	1 cut(s)	95
BtsCI	GGATG	1 cut(s)	204
Cac8I	GCNNGC	1 cut(s)	141
CfoI	GCGC	1 cut(s)	117
Cfr13I	GGNCC	1 cut(s)	359
CseI	GACGC	1 cut(s)	330
Csp6I	GTAC	2 cut(s)	202, 207
CviAII	CATG	2 cut(s)	94, 260
CviJI	RGCY	8 cut(s)	21, 53, 92, 143, 157, 316, 332, 398
CviKI_1	RGCY	8 cut(s)	21, 53, 92, 143, 157, 316, 332, 398
CviQI	GTAC	2 cut(s)	202, 207
Eco130I	CCWWGG	1 cut(s)	13
Eco47I	GGWCC	1 cut(s)	359
Eco57I	CTGAAG	2 cut(s)	89, 143
EcoT14I	CCWWGG	1 cut(s)	13
ErhI	CCWWGG	1 cut(s)	13
FaeI	CATG	2 cut(s)	97, 263
FaiI	YATR	5 cut(s)	95, 219, 261, 275, 433
FaqI	GGGAC	1 cut(s)	328
FatI	CATG	2 cut(s)	93, 259
FauI	CCCGC	1 cut(s)	132
Fnu4HI	GCNGC	1 cut(s)	333
FokI	GGATG	1 cut(s)	211
Fsp4HI	GCNGC	1 cut(s)	333
FspBI	CTAG	1 cut(s)	99
FspI	TGCGCA	1 cut(s)	116
GlaI	GCGC	1 cut(s)	116
GluI	GCNGC	1 cut(s)	333
GsuI	CTGGAG	1 cut(s)	94
HgaI	GACGC	1 cut(s)	330
HhaI	GCGC	1 cut(s)	117
Hin1I	GRCGYC	1 cut(s)	341
Hin1II	CATG	2 cut(s)	97, 263
Hin6I	GCGC	1 cut(s)	115
HinP1I	GCGC	1 cut(s)	115
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HinfI	GANTC	1 cut(s)	371
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	1 cut(s)	108
Hpy188III	TCNNGA	5 cut(s)	32, 149, 161, 380, 413
Hpy8I	GTNNAC	1 cut(s)	370
HpyAV	CCTTC	3 cut(s)	61, 224, 276
HpyCH4III	ACNGT	2 cut(s)	206, 391
HpyCH4V	TGCA	1 cut(s)	335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	338
Hsp92I	GRCGYC	1 cut(s)	341
Hsp92II	CATG	2 cut(s)	97, 263
HspAI	GCGC	1 cut(s)	115
LmnI	GCTCC	2 cut(s)	313, 403
Lsp1109I	GCAGC	1 cut(s)	319
MaeI	CTAG	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	352
MboII	GAAGA	1 cut(s)	95
MfeI	CAATTG	1 cut(s)	134
MluCI	AATT	6 cut(s)	35, 134, 182, 189, 301, 383
MlyI	GAGTC	1 cut(s)	365
MseI	TTAA	3 cut(s)	48, 185, 192
MunI	CAATTG	1 cut(s)	134
MwoI	GCNNNNNNNGC	1 cut(s)	338
NlaIII	CATG	2 cut(s)	97, 263
NlaIV	GGNNCC	3 cut(s)	315, 360, 399
NsbI	TGCGCA	1 cut(s)	116
NspI	RCATGY	1 cut(s)	263
NspV	TTCGAA	1 cut(s)	289
PkrI	GCNGC	1 cut(s)	334
PleI	GAGTC	1 cut(s)	365
PpsI	GAGTC	1 cut(s)	365
PsiI	TTATAA	1 cut(s)	275
PspN4I	GGNNCC	3 cut(s)	315, 360, 399
PspPI	GGNCC	1 cut(s)	359
PstI	CTGCAG	1 cut(s)	337
RsaI	GTAC	2 cut(s)	203, 208
RsaNI	GTAC	2 cut(s)	202, 207
SaqAI	TTAA	3 cut(s)	48, 185, 192
SatI	GCNGC	1 cut(s)	333
Sau96I	GGNCC	1 cut(s)	359
SchI	GAGTC	1 cut(s)	365
SetI	ASST	2 cut(s)	55, 334
SfcI	CTRYAG	2 cut(s)	54, 333
SfuI	TTCGAA	1 cut(s)	289
SinI	GGWCC	1 cut(s)	359
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	6 cut(s)	35, 134, 182, 189, 301, 383
SsiI	CCGC	1 cut(s)	139
SspI	AATATT	1 cut(s)	286
SspMI	CTAG	1 cut(s)	99
StyI	CCWWGG	1 cut(s)	13
TaaI	ACNGT	2 cut(s)	206, 391
TaqI	TCGA	2 cut(s)	289, 306
TasI	AATT	6 cut(s)	35, 134, 182, 189, 301, 383
TatI	WGTACW	2 cut(s)	201, 206
Tru1I	TTAA	3 cut(s)	48, 185, 192
Tru9I	TTAA	3 cut(s)	48, 185, 192
TseI	GCWGC	1 cut(s)	332
VpaK11BI	GGWCC	1 cut(s)	359
XapI	RAATTY	1 cut(s)	35
XceI	RCATGY	1 cut(s)	263
XspI	CTAG	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.