Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000251.1

Orthogroup ID

OG0000069

Physical Location & Seq

Genomic Coordinates Forward (+)

49019 .. 59521

Gene Structure 10503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000251.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4125 bp

atggctgaaggcgttgttacagttgtggctgaagggatcaagcccctcggagagttcatcattcagcaagcgaaattcttgagtggagtcagctatcaaattgagcttgcgcagattgagctacatttgatccggggatttctaaaagacgcagatacgaggcaacaagatgaagaactagtacgcatttgtgttaaacttatcagagatgctgcttatgatttggaggatgtcattgaatcttttgccttgaaagtggcttccaggaggagaggaggtaccgtgaagattgttctcaaaaggtttacctgcatctttaatgaaggacttaatcgatacaagattgcgtccgatattgaggatattatgaccaaactttctcatctgaggtcaagtttgcaaagttataacatcaggcaaataagtggggctgatggtgtcgcttcttcttttaagaggcaacgagaccgaaggctaacttatgctcatcaagttgaaaatcacattgttggcttggaggaaagcacagatgtactggtgaaggagttggtgagagaaggaaagagtcaccgtgttgtttctatttgggggatgggcggctccggaaaaaccactcttgcaaaacaggtttttcttcaaaatgaagttaagcgtcattttgattgttttgcttgggtctgtatatctcaacaatgggaaggaaaggatgtattggaagagattttaattaaactcacttccccaacaacagagagaaggaaagaaatttccaaaatgaaaaaggatgaaatagcaagggaggtctgtagtatccaacgagaaaagagatgtctggtggtccttgatgacatatggactcaaggggcttggcattcgataaaagctggattcccaatcagtgaggaaaccgagagccggatattacttactactcgcaagaaagaagttgccttgcttgcatccggaaatgatcgtctccaccaacctcaacaattaaatgacaagcaaatctgggaactgtttgaaaagatagccatatgtgaaagcgacaaaacagacttggaagtttataaaaagaagagagaattaggaaagaagatgcttgtacattgttcaggtttgccattagccatcagtgtgcttgctggtcttctaagtagacgagagaaagttgaggagtgggaaacagtacttagaaatgttgatcaatacataatgagaggcacaaatgtccttgaaagagaaaacacaggtgaagagtatggtgtatcgagtgtcttggcattgagttatgatgatttaccatctaacttaaaactctgctttctatacttggcccaatttcctgaggatcatgagatacaggtaacaagattgactcaattatggattgcagaagggtttataacttcaacatcagaaatacagggttcagtggaaataatggaagatgcatcatatggctgcgtaactgaactggtggaaagatctatgattcaagttgtaaaatctggtttaagtgggaaggtgaaaactttccgtctccatgatcttatgcgggacttgtgcttgcaaaaggcaaaagaagagaactttctcggtattgttaacttttctgttggtccggtatctaatgcaacactgattggtaaggttcgaagactagccctctatttggatgaaaatgttaaatatgagttcagcagtaagaatggaagagatggccacatcagatctctattatactttgccccagaacgcttcaagcaaaagtggaacaaaagaataatacgatcagtattcaatgacttcaaattgcttagagtcttgaagtttgaaaatatatatgaagattttgagttaccaaagacgattgggaatctagtccacttgaggtttctgagtctgaaggatagtgcatatcgtgccttgccatcatctgtatctaatctggtacttttgcaaactctagatctgcggagtaatgttttagatgatggatcttgttttgggtttcattggcagagggctattaaaatcagaaatgtgttttggaatttggagcaactgaggcatttgtatttaccaagacagtatagtgtcagtggaaaactgtcatttgcaaggctgtgcaatttgcagacgttggtcaatgttagaattgagaaatgtgatttgaatggtcttgttcaattaagcaatctgaagaaactaagcataaggccatcagagtctagtaggttggaaaagctgaaggacatgttgatatcaaggaatagaacatataaacatcttcggtctctatctctggaggtaatcggatctggtgatggggatattataccaagtgatatagtattaaggtgtcctcatttatacaagctgcgactggaggggaaaatgacagcgttaccgaaagagctcccaaaccgcaccaagttaacgctgagacatacaagactgaaggctgaccagattgaaatactggagaagctgcccaacttaagggtgctttacctcggttcggattctttcgaatcagaaacattggttttctcccaaggaggctttcctcatctggaatttctcacccttaatgcattgtatgatttgaaggagtggagggtggagaaagaagccatgcctagtcttcagagattgcgcattgaatattgcacagaattgcggggagttccagatgggcttcaggagattactaccctcaaggaattaacaattaacgcgatgcgcagtacattctgcagtagagtcaaggaaggaggagaggatttctacaaaatcaaacatgtgccttctcttataatcacaaatacctgggacgacgaggagccagtaacggagcagaaagaaaagaaaagaaaaacagagcaagtgttctccaagctctttctccctccaccggtcatcaatcgacgccaaacaaccttctgtggcttcgtctcagccttgcgaagctacctgcggcggtcttgggtcacggcacagccggaagcggctgcgaagaggccgggttcgtccagccccgatttgaattccaagcatggttgctcgagctatcgaccacgaaaccttcttaaactccatccacaggttcgcatcgacctcctgaagctcccagaaccaaccttacacggaggcatagcccgtagcagcagctgcaaggcaaccccacggaaccggaaattatcgatccaaatatctcgagctacaggacgccgttttgcttgtttcttggactgtcagttcgccttgatgttcttaacaactctacagaaggaatcgaggcctgaaagtgaagtttttacgtcgaaatcaagctcgccggattctgcgtttttcgccggattctggaaatttccggccaccccgactgttttaggtaatttcgactccatccggtcattttcagacttcatgctagttaggaaagttgttaggcttgatgagatgaagaggagcagcctggccccgacaccattggcggtggtcggcggcggctcggccccaaactccggcgccctttccggccacctccgggggaagatccgaccgttggatcttcgtgataatttcaggaggatgatccaaaggatttatgtgtttttccctgatgaaccaaaaataggggtcaggacgatcaagaattacatcaaacgcttggttcaggaggatacagacaaagccatcgtgcttattcaacaaaatctgactccctttggaaagcgcttcataagtgagatgagatcaaagtactacttggaggttttccagcttcctcgtattcagctgattgatccaattgcaagatattacgggcttaagcgtggacaagttgtgaagataatccggccaagtgagactgcaggacgatatgtcacctaccgttactgtcgtgatggaaggttagctcagaaattgaacattgcagttgggattttgcgaagatctccattagtcaaatgggttcaaagtaccacttggagaattgatggaggttggagaaagaagccatgcctagtcttcagtgattgcgcattgaatggtgcgaacaactgcgggcggttccagaagggcttcaggagattactaccttcaaggaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0002230 GO:0002238 GO:0002239 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009615 GO:0009620 GO:0009626 GO:0009628 GO:0009637 GO:0009642 GO:0009646 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0012501 GO:0014070 GO:0016020 GO:0023052 GO:0030054 GO:0031347 GO:0032101 GO:0032870 GO:0033554 GO:0034050 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0043207 GO:0043900 GO:0044464 GO:0045087 GO:0046677 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071944 GO:0080134 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

1374

Amino Acids

157.5

Weight (kDa)

9.58

Isoelectric Point (pI)

48.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G50180 AT1G53350 AT1G58390 AT1G58390 AT1G58400 AT1G58400 AT1G58400 AT1G58410 AT1G58410 AT1G58410 AT1G58410 AT1G58602 AT1G58602 AT1G58807 AT1G58807 AT1G58848 AT1G58848 AT1G59124 AT1G59124 AT1G59218 AT1G59218 AT1G59218 AT1G59620 AT1G59780 AT1G59780 AT5G35450 AT5G35450 AT5G43470 AT5G43470 AT5G43470 AT5G43470 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620
fragaria_vesca	FvH4_4g04072 FvH4_4g22931 FvH4_4g22931 FvH4_4g22940 FvH4_6g49940 FvH4_6g49940 FvH4_7g08100 FvH4_7g08870 FvH4_7g08870 FvH4_7g09280 FvH4_7g09290 FvH4_7g15190 FvH4_7g15200 FvH4_7g15240 FvH4_7g15240 FvH4_7g33440
malus_domestica	MD00G1174600.v1.1 MD01G1113700.v1.1 MD03G1071300.v1.1 MD04G1041500.v1.1 MD04G1238000.v1.1 MD07G1029000.v1.1 MD07G1092100.v1.1 MD07G1092300.v1.1 MD07G1092600.v1.1 MD12G1256300.v1.1 MD13G1128200.v1.1 MD13G1128400.v1.1 MD17G1268000.v1.1
prunus_persica	Prupe.1G041300_v2.0.a1 Prupe.1G041300_v2.0.a1 Prupe.1G042900_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043600_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G046700_v2.0.a1 Prupe.1G047700_v2.0.a1 Prupe.1G047900_v2.0.a1 Prupe.1G048000_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G049900_v2.0.a1 Prupe.1G051500_v2.0.a1 Prupe.1G051800_v2.0.a1 Prupe.1G051900_v2.0.a1 Prupe.1G052200_v2.0.a1 Prupe.1G194900_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117300_v2.0.a1 Prupe.2G117400_v2.0.a1 Prupe.2G117500_v2.0.a1 Prupe.2G117700_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G119900_v2.0.a1
pyrus_communis	pycom03g05750 pycom04g21110 pycom07g07530 pycom07g07590 pycom13g11110 pycom13g11140 pycom13g11160 pycom13g11170 pycom17g26680
rosa_chinensis	RchiOBHm_Chr1g0341231 RchiOBHm_Chr1g0344091 RchiOBHm_Chr1g0344161 RchiOBHm_Chr1g0345001 RchiOBHm_Chr1g0345351 RchiOBHm_Chr1g0345371 RchiOBHm_Chr1g0345391 RchiOBHm_Chr1g0345531 RchiOBHm_Chr1g0345551 RchiOBHm_Chr1g0345571 RchiOBHm_Chr1g0345581 RchiOBHm_Chr1g0345661 RchiOBHm_Chr1g0345691 RchiOBHm_Chr1g0345761 RchiOBHm_Chr1g0345791 RchiOBHm_Chr1g0345821 RchiOBHm_Chr1g0345911 RchiOBHm_Chr1g0345941 RchiOBHm_Chr1g0357611 RchiOBHm_Chr1g0357911 RchiOBHm_Chr1g0357921 RchiOBHm_Chr1g0357931 RchiOBHm_Chr1g0357971 RchiOBHm_Chr1g0358121 RchiOBHm_Chr1g0383491 RchiOBHm_Chr1g0383511 RchiOBHm_Chr1g0383521 RchiOBHm_Chr3g0480581 RchiOBHm_Chr4g0394341 RchiOBHm_Chr4g0394361 RchiOBHm_Chr4g0394411 RchiOBHm_Chr4g0394441 RchiOBHm_Chr4g0407681 RchiOBHm_Chr4g0429191 RchiOBHm_Chr4g0429201 RchiOBHm_Chr4g0429211 RchiOBHm_Chr4g0429221 RchiOBHm_Chr6g0265091
rosa_laevigata	RLG00000007088 RLG00000008700 RLG00000009190 RLG00000009702 RLG00000014210 RLG00000028829 RLG00000028833 RLG00000028837 RLG00000028838 RLG00000028921 RLG00000028926
rosa_multiflora	Rmu_co8366955.1_g000001 Rmu_co8394205.1_g000001 Rmu_sc0000019.1_g000001 Rmu_sc0000054.1_g000031 Rmu_sc0000054.1_g000033 Rmu_sc0000200.1_g000002 Rmu_sc0000200.1_g000007 Rmu_sc0000200.1_g000018 Rmu_sc0000200.1_g000020 Rmu_sc0000200.1_g000021 Rmu_sc0000251.1_g000012 Rmu_sc0000251.1_g000015 Rmu_sc0000251.1_g000028 Rmu_sc0000253.1_g000015 Rmu_sc0000255.1_g000045 Rmu_sc0000255.1_g000046 Rmu_sc0001292.1_g000013 Rmu_sc0001292.1_g000018 Rmu_sc0001292.1_g000028 Rmu_sc0001292.1_g000029 Rmu_sc0001349.1_g000006 Rmu_sc0001349.1_g000014 Rmu_sc0001582.1_g000006 Rmu_sc0001582.1_g000018 Rmu_sc0001582.1_g000020 Rmu_sc0001692.1_g000007 Rmu_sc0001692.1_g000024 Rmu_sc0001692.1_g000026 Rmu_sc0001692.1_g000029 Rmu_sc0001692.1_g000030 Rmu_sc0001835.1_g000006 Rmu_sc0001835.1_g000010 Rmu_sc0002071.1_g000005 Rmu_sc0002276.1_g000002 Rmu_sc0002276.1_g000009 Rmu_sc0002329.1_g000018 Rmu_sc0002329.1_g000023 Rmu_sc0002329.1_g000025 Rmu_sc0002523.1_g000005 Rmu_sc0003573.1_g000005 Rmu_sc0003573.1_g000006 Rmu_sc0004099.1_g000021 Rmu_sc0005812.1_g000009 Rmu_sc0006271.1_g000002 Rmu_sc0006287.1_g000038 Rmu_sc0006439.1_g000008 Rmu_sc0007456.1_g000004 Rmu_sc0007581.1_g000009 Rmu_sc0007849.1_g000014 Rmu_sc0008115.1_g000012 Rmu_sc0010521.1_g000004 Rmu_sc0012471.1_g000017 Rmu_sc0014762.1_g000001 Rmu_sc0015150.1_g000003 Rmu_sc0017221.1_g000001 Rmu_sc0017299.1_g000001 Rmu_sc0017299.1_g000002 Rmu_sc0021457.1_g000001 Rmu_sc0022067.1_g000001 Rmu_sc0033275.1_g000001 Rmu_ssc0000245.1_g000012 Rmu_ssc0000359.1_g000035 Rmu_ssc0000359.1_g000067 Rmu_ssc0000359.1_g000072 Rmu_ssc0000434.1_g000005 Rmu_ssc0000434.1_g000007
rosa_roxburghii	Rroxscaffold_4G00298420 Rroxscaffold_4G00298720 Rroxscaffold_4G00308990 Rroxscaffold_4G00309000 Rroxscaffold_4G00309010 Rroxscaffold_4G00309050 Rroxscaffold_4G00309070 Rroxscaffold_4G00309100 Rroxscaffold_4G00310030 Rroxscaffold_4G00310050 Rroxscaffold_4G00311880 Rroxscaffold_5G00339420 Rroxscaffold_5G00339450 Rroxscaffold_5G00344880 Rroxscaffold_5G00352270 Rroxscaffold_5G00362240 Rroxscaffold_5G00370840 Rroxscaffold_7G00202970
rosa_rugosa	Rorug01G0159100.1 Rorug01G0159200.1 Rorug01G0171700 Rorug01G0171900 Rorug01G0172000 Rorug01G0191700 Rorug01G0191800 Rorug01G0256900 Rorug01G0257000 Rorug01G0257100 Rorug03G0198000 Rorug03G0366300.1 Rorug03G0366400.1 Rorug03G0366500.1 Rorug04G0081200 Rorug04G0081200 Rorug04G0081200 Rorug04G0233700 Rorug04G0233800 Rorug04G0233800 Rorug06G0013300
rosa_samantha	Rh1CG138800 Rh1CG161300 Rh1CG173800 Rh1CG179800 Rh1CG180100 Rh1CG180500 Rh1CG180800 Rh1CG180900 Rh1CG194100 Rh1DG205100 Rh3AG236300 Rh4AG052000 Rh4AG052100 Rh4AG145900 Rh4AG289700 Rh4AG289800 Rh6AG136800 Rh6AG137300 Rh6BG133600 Rh6CG132000 Rh6CG134000 Rh6DG119300
rosa_wichuraiana	Rw0G003420 Rw1G015500 Rw1G016110 Rw1G016180 Rw1G016210 Rw1G016230 Rw1G016280 Rw1G016440 Rw1G016450 Rw1G016460 Rw1G016480 Rw1G017490 Rw1G024140 Rw1G024160 Rw3G022530 Rw4G004140 Rw4G004190 Rw4G011850 Rw6G011800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	408, 1071, 1406, 2822
Acc16I	TGCGCA	4 cut(s)	111, 2663, 2750, 4054
Acc36I	ACCTGC	2 cut(s)	317, 2988
Acc65I	GGTACC	1 cut(s)	278
AccB1I	GGYRCC	2 cut(s)	278, 3536
AccI	GTMKAC	1 cut(s)	1159
AccII	CGCG	1 cut(s)	2744
AccIII	TCCGGA	2 cut(s)	602, 962
AcoI	YGGCCR	4 cut(s)	1723, 3381, 3547, 3869
AcsI	RAATTY	6 cut(s)	74, 765, 2056, 2582, 3052, 3374
AcyI	GRCGYC	3 cut(s)	2935, 3235, 3537
AfaI	GTAC	9 cut(s)	183, 280, 534, 1107, 1191, 1956, 2755, 3773, 3994
AfeI	AGCGCT	1 cut(s)	3746
AflII	CTTAAG	2 cut(s)	2503, 3839
AflIII	ACRYGT	2 cut(s)	2259, 2806
AgeI	ACCGGT	1 cut(s)	2920
AhdI	GACNNNNNGTC	1 cut(s)	3893
AhlI	ACTAGT	1 cut(s)	178
AjnI	CCWGG	3 cut(s)	263, 2834, 3483
AjuI	GAANNNNNNNTTGG	4 cut(s)	2035, 2067, 2553, 2585
AloI	GAACNNNNNNTCC	2 cut(s)	3248, 3280
Alw21I	GWGCWC	1 cut(s)	2424
Alw26I	GTCTC	7 cut(s)	459, 980, 1547, 2304, 2443, 2965, 3872
AlwNI	CAGNNNCTG	1 cut(s)	3177
Ama87I	CYCGRG	2 cut(s)	3070, 3222
Aor13HI	TCCGGA	2 cut(s)	602, 962
Aor51HI	AGCGCT	1 cut(s)	3746
ApeKI	GCWGC	9 cut(s)	212, 1464, 2383, 2494, 3017, 3171, 3174, 3177, 3480
ApoI	RAATTY	6 cut(s)	74, 765, 2056, 2582, 3052, 3374
ArsI	GACNNNNNNTTYG	2 cut(s)	3248, 3280
AsiGI	ACCGGT	1 cut(s)	2920
Asp700I	GAANNNNTTC	2 cut(s)	1535, 4094
Asp718I	GGTACC	1 cut(s)	278
AspLEI	GCGC	6 cut(s)	112, 2664, 2751, 3539, 3747, 4055
AspS9I	GGNCC	5 cut(s)	838, 1336, 1622, 3487, 3523
AsuC2I	CCSGG	3 cut(s)	134, 3030, 3557
AsuHPI	GGTGA	8 cut(s)	550, 560, 562, 1265, 1540, 2339, 2581, 3889
AsuII	TTCGAA	2 cut(s)	1657, 2535
AvaI	CYCGRG	2 cut(s)	3070, 3222
AvaII	GGWCC	2 cut(s)	838, 1622
AxyI	CCTNAGG	1 cut(s)	1347
BalI	TGGCCA	1 cut(s)	1725
BanI	GGYRCC	2 cut(s)	278, 3536
BanII	GRGCYC	1 cut(s)	2424
BarI	GAAGNNNNNNTAC	2 cut(s)	165, 197
BbsI	GAAGAC	4 cut(s)	1142, 1666, 2642, 4033
Bbv12I	GWGCWC	1 cut(s)	2424
BbvI	GCAGC	9 cut(s)	199, 1451, 2370, 2481, 3004, 3164, 3183, 3186, 3492
BceAI	ACGGC	2 cut(s)	3015, 3222
BciT130I	CCWGG	3 cut(s)	265, 2836, 3485
BciVI	GTATCC	2 cut(s)	821, 3685
BclI	TGATCA	1 cut(s)	1204
BcnI	CCSGG	3 cut(s)	134, 3030, 3557
BcoDI	GTCTC	7 cut(s)	459, 980, 1547, 2304, 2443, 2965, 3872
BcuI	ACTAGT	1 cut(s)	178
BfaI	CTAG	8 cut(s)	179, 1664, 1883, 1970, 2235, 2646, 3440, 4037
BfmI	CTRYAG	5 cut(s)	805, 2761, 3228, 3290, 3882
BfoI	RGCGCY	2 cut(s)	3540, 3748
BfrI	CTTAAG	2 cut(s)	2503, 3839
BfuAI	ACCTGC	2 cut(s)	317, 2988
BfuI	GTATCC	2 cut(s)	821, 3685
BglII	AGATCT	4 cut(s)	1487, 1733, 1972, 3965
BmcAI	AGTACT	2 cut(s)	1191, 3773
Bme1390I	CCNGG	6 cut(s)	134, 265, 2836, 3030, 3485, 3557
Bme18I	GGWCC	2 cut(s)	838, 1622
BmeRI	GACNNNNNGTC	1 cut(s)	3893
BmeT110I	CYCGRG	2 cut(s)	3070, 3222
BmgT120I	GGNCC	5 cut(s)	838, 1336, 1622, 3487, 3523
BmiI	GGNNCC	8 cut(s)	280, 601, 2850, 3197, 3489, 3525, 3538, 4085
BmrFI	CCNGG	6 cut(s)	134, 265, 2836, 3030, 3485, 3557
BmsI	GCATC	8 cut(s)	199, 321, 968, 1089, 1441, 1463, 2736, 3126
BoxI	GACNNNNGTC	1 cut(s)	2147
BpiI	GAAGAC	4 cut(s)	1142, 1666, 2642, 4033
BpmI	CTGGAG	3 cut(s)	2330, 2411, 2507
Bpu14I	TTCGAA	2 cut(s)	1657, 2535
BpuEI	CTTGAG	4 cut(s)	100, 843, 1912, 2708
BpuMI	CCSGG	3 cut(s)	134, 3030, 3557
Bsa29I	ATCGAT	2 cut(s)	334, 3209
BsaHI	GRCGYC	3 cut(s)	2935, 3235, 3537
BsaI	GGTCTC	2 cut(s)	459, 2304
BsaJI	CCNNGG	7 cut(s)	46, 133, 2518, 2560, 2835, 3191, 3556
BsaWI	WCCGGW	6 cut(s)	602, 962, 1624, 2920, 3198, 3417
BsaXI	ACNNNNNCTCC	4 cut(s)	262, 267, 292, 297
Bse118I	RCCGGY	1 cut(s)	2920
Bse1I	ACTGG	5 cut(s)	540, 1482, 2394, 2490, 2852
Bse21I	CCTNAGG	1 cut(s)	1347
Bse3DI	GCAATG	1 cut(s)	3942
BseAI	TCCGGA	2 cut(s)	602, 962
BseBI	CCWGG	3 cut(s)	265, 2836, 3485
BseCI	ATCGAT	2 cut(s)	334, 3209
BseDI	CCNNGG	7 cut(s)	46, 133, 2518, 2560, 2835, 3191, 3556
BseGI	GGATG	9 cut(s)	235, 597, 712, 790, 959, 1684, 3103, 3414, 3606
BseMI	GCAATG	1 cut(s)	3942
BseMII	CTCAG	7 cut(s)	377, 1338, 1892, 2060, 2438, 2976, 3944
BseNI	ACTGG	5 cut(s)	540, 1482, 2394, 2490, 2852
BseRI	GAGGAG	6 cut(s)	283, 288, 1190, 2796, 2861, 3490
BseXI	GCAGC	9 cut(s)	199, 1451, 2370, 2481, 3004, 3164, 3183, 3186, 3492
Bsh1236I	CGCG	1 cut(s)	2744
Bsh1285I	CGRYCG	1 cut(s)	3572
BshNI	GGYRCC	2 cut(s)	278, 3536
BshTI	ACCGGT	1 cut(s)	2920
BshVI	ATCGAT	2 cut(s)	334, 3209
BsiEI	CGRYCG	1 cut(s)	3572
BsiHKAI	GWGCWC	1 cut(s)	2424
BsiHKCI	CYCGRG	2 cut(s)	3070, 3222
BslFI	GGGAC	2 cut(s)	1574, 2852
BsmAI	GTCTC	7 cut(s)	459, 980, 1547, 2304, 2443, 2965, 3872
BsmBI	CGTCTC	3 cut(s)	980, 1547, 2965
BsmFI	GGGAC	2 cut(s)	1574, 2852
BsmI	GAATGC	1 cut(s)	871
Bso31I	GGTCTC	2 cut(s)	459, 2304
BsoBI	CYCGRG	2 cut(s)	3070, 3222
Bsp119I	TTCGAA	2 cut(s)	1657, 2535
Bsp1286I	GDGCHC	1 cut(s)	2424
Bsp13I	TCCGGA	2 cut(s)	602, 962
Bsp1407I	TGTACA	1 cut(s)	1105
BspCNI	CTCAG	7 cut(s)	378, 1339, 1893, 2061, 2439, 2975, 3943
BspDI	ATCGAT	2 cut(s)	334, 3209
BspEI	TCCGGA	2 cut(s)	602, 962
BspFNI	CGCG	1 cut(s)	2744
BspHI	TCATGA	1 cut(s)	1354
BspLI	GGNNCC	8 cut(s)	280, 601, 2850, 3197, 3489, 3525, 3538, 4085
BspMAI	CTGCAG	2 cut(s)	2765, 3886
BspMI	ACCTGC	2 cut(s)	317, 2988
BspT104I	TTCGAA	2 cut(s)	1657, 2535
BspT107I	GGYRCC	2 cut(s)	278, 3536
BspTI	CTTAAG	2 cut(s)	2503, 3839
BspTNI	GGTCTC	2 cut(s)	459, 2304
BsrDI	GCAATG	1 cut(s)	3942
BsrFI	RCCGGY	1 cut(s)	2920
BsrGI	TGTACA	1 cut(s)	1105
BsrI	ACTGG	5 cut(s)	540, 1482, 2394, 2490, 2852
BssAI	RCCGGY	1 cut(s)	2920
BssECI	CCNNGG	7 cut(s)	46, 133, 2518, 2560, 2835, 3191, 3556
BssNI	GRCGYC	3 cut(s)	2935, 3235, 3537
BssT1I	CCWWGG	1 cut(s)	2560
Bst2UI	CCWGG	3 cut(s)	265, 2836, 3485
Bst6I	CTCTTC	7 cut(s)	711, 1073, 1251, 1581, 1711, 3017, 3467
BstACI	GRCGYC	3 cut(s)	2935, 3235, 3537
BstAFI	CTTAAG	2 cut(s)	2503, 3839
BstAPI	GCANNNNNTGC	2 cut(s)	1925, 3177
BstAUI	TGTACA	1 cut(s)	1105
BstBI	TTCGAA	2 cut(s)	1657, 2535
BstC8I	GCNNGC	7 cut(s)	69, 108, 957, 1143, 1571, 3341, 4079
BstDSI	CCRYGG	1 cut(s)	3191
BstF5I	GGATG	9 cut(s)	235, 597, 712, 790, 959, 1684, 3103, 3414, 3606
BstFNI	CGCG	1 cut(s)	2744
BstH2I	RGCGCY	2 cut(s)	3540, 3748
BstHHI	GCGC	6 cut(s)	112, 2664, 2751, 3539, 3747, 4055
BstMAI	GTCTC	7 cut(s)	459, 980, 1547, 2304, 2443, 2965, 3872
BstMCI	CGRYCG	1 cut(s)	3572
BstMWI	GCNNNNNNNGC	6 cut(s)	118, 956, 1925, 2071, 3177, 3359
BstNI	CCWGG	3 cut(s)	265, 2836, 3485
BstNSI	RCATGY	2 cut(s)	2263, 2810
BstPAI	GACNNNNGTC	1 cut(s)	2147
BstSCI	CCNGG	6 cut(s)	132, 263, 2834, 3028, 3483, 3555
BstSFI	CTRYAG	5 cut(s)	805, 2761, 3228, 3290, 3882
BstUI	CGCG	1 cut(s)	2744
BstV1I	GCAGC	9 cut(s)	199, 1451, 2370, 2481, 3004, 3164, 3183, 3186, 3492
BstV2I	GAAGAC	4 cut(s)	1142, 1666, 2642, 4033
BstX2I	RGATCY	8 cut(s)	1487, 1733, 1972, 2000, 2321, 3564, 3577, 3965
BstYI	RGATCY	8 cut(s)	1487, 1733, 1972, 2000, 2321, 3564, 3577, 3965
Bsu15I	ATCGAT	2 cut(s)	334, 3209
Bsu36I	CCTNAGG	1 cut(s)	1347
BsuI	GTATCC	2 cut(s)	821, 3685
BsuTUI	ATCGAT	2 cut(s)	334, 3209
BtgI	CCRYGG	1 cut(s)	3191
BtgZI	GCGATG	1 cut(s)	2759
BtsCI	GGATG	9 cut(s)	235, 597, 712, 790, 959, 1684, 3103, 3414, 3606
BtsIMutI	CAGTG	6 cut(s)	904, 1141, 1440, 1640, 2110, 4051
BveI	ACCTGC	2 cut(s)	317, 2988
Cac8I	GCNNGC	7 cut(s)	69, 108, 957, 1143, 1571, 3341, 4079
CaiI	CAGNNNCTG	1 cut(s)	3177
CciI	TCATGA	1 cut(s)	1354
CfoI	GCGC	6 cut(s)	112, 2664, 2751, 3539, 3747, 4055
Cfr10I	RCCGGY	1 cut(s)	2920
Cfr13I	GGNCC	5 cut(s)	838, 1336, 1622, 3487, 3523
ClaI	ATCGAT	2 cut(s)	334, 3209
CseI	GACGC	5 cut(s)	158, 336, 641, 2943, 3243
Csp6I	GTAC	9 cut(s)	182, 279, 533, 1106, 1190, 1955, 2754, 3772, 3993
CspAI	ACCGGT	1 cut(s)	2920
CviAII	CATG	8 cut(s)	1355, 1547, 2260, 2641, 2807, 3062, 3436, 4032
CviQI	GTAC	9 cut(s)	182, 279, 533, 1106, 1190, 1955, 2754, 3772, 3993
DinI	GGCGCC	1 cut(s)	3538
DriI	GACNNNNNGTC	1 cut(s)	3893
EaeI	YGGCCR	4 cut(s)	1723, 3381, 3547, 3869
Eam1104I	CTCTTC	7 cut(s)	711, 1073, 1251, 1581, 1711, 3017, 3467
Eam1105I	GACNNNNNGTC	1 cut(s)	3893
EarI	CTCTTC	7 cut(s)	711, 1073, 1251, 1581, 1711, 3017, 3467
Ecl136II	GAGCTC	1 cut(s)	2422
Eco130I	CCWWGG	1 cut(s)	2560
Eco147I	AGGCCT	1 cut(s)	3307
Eco24I	GRGCYC	1 cut(s)	2424
Eco31I	GGTCTC	2 cut(s)	459, 2304
Eco32I	GATATC	1 cut(s)	2268
Eco47I	GGWCC	2 cut(s)	838, 1622
Eco47III	AGCGCT	1 cut(s)	3746
Eco53kI	GAGCTC	1 cut(s)	2422
Eco81I	CCTNAGG	1 cut(s)	1347
Eco88I	CYCGRG	2 cut(s)	3070, 3222
EcoICRI	GAGCTC	1 cut(s)	2422
EcoRI	GAATTC	1 cut(s)	3052
EcoRII	CCWGG	3 cut(s)	263, 2834, 3483
EcoRV	GATATC	1 cut(s)	2268
EcoT14I	CCWWGG	1 cut(s)	2560
EcoT22I	ATGCAT	2 cut(s)	1456, 2602
EcoT38I	GRGCYC	1 cut(s)	2424
EgeI	GGCGCC	1 cut(s)	3538
EheI	GGCGCC	1 cut(s)	3538
ErhI	CCWWGG	1 cut(s)	2560
Esp3I	CGTCTC	3 cut(s)	980, 1547, 2965
FaeI	CATG	8 cut(s)	1358, 1550, 2263, 2644, 2810, 3065, 3439, 4035
FalI	AAGNNNNNCTT	6 cut(s)	463, 495, 3761, 3793, 3982, 4014
FaqI	GGGAC	2 cut(s)	1574, 2852
FatI	CATG	8 cut(s)	1354, 1546, 2259, 2640, 2806, 3061, 3435, 4031
FauI	CCCGC	3 cut(s)	1551, 2679, 4070
FauNDI	CATATG	3 cut(s)	851, 1037, 1459
FbaI	TGATCA	1 cut(s)	1204
FblI	GTMKAC	1 cut(s)	1159
FokI	GGATG	9 cut(s)	242, 604, 719, 797, 946, 1691, 3090, 3401, 3613
FriOI	GRGCYC	1 cut(s)	2424
FspBI	CTAG	8 cut(s)	179, 1664, 1883, 1970, 2235, 2646, 3440, 4037
FspI	TGCGCA	4 cut(s)	111, 2663, 2750, 4054
GlaI	GCGC	6 cut(s)	111, 2663, 2750, 3538, 3746, 4054
GsuI	CTGGAG	3 cut(s)	2330, 2411, 2507
HaeII	RGCGCY	2 cut(s)	3540, 3748
HgaI	GACGC	5 cut(s)	158, 336, 641, 2943, 3243
HhaI	GCGC	6 cut(s)	112, 2664, 2751, 3539, 3747, 4055
Hin1I	GRCGYC	3 cut(s)	2935, 3235, 3537
Hin1II	CATG	8 cut(s)	1358, 1550, 2263, 2644, 2810, 3065, 3439, 4035
Hin6I	GCGC	6 cut(s)	110, 2662, 2749, 3537, 3745, 4053
HinP1I	GCGC	6 cut(s)	110, 2662, 2749, 3537, 3745, 4053
HincII	GTYRAC	2 cut(s)	1609, 2442
HindII	GTYRAC	2 cut(s)	1609, 2442
HpaI	GTTAAC	2 cut(s)	1609, 2442
HphI	GGTGA	8 cut(s)	550, 560, 562, 1265, 1540, 2339, 2581, 3889
Hpy166II	GTNNAC	6 cut(s)	306, 1160, 1609, 1888, 2442, 3848
Hpy8I	GTNNAC	6 cut(s)	306, 1160, 1609, 1888, 2442, 3848
Hpy99I	CGWCG	3 cut(s)	2846, 2937, 3331
HpyCH4IV	ACGT	2 cut(s)	2144, 3326
HpyF10VI	GCNNNNNNNGC	6 cut(s)	118, 956, 1925, 2071, 3177, 3359
HpySE526I	ACGT	2 cut(s)	2144, 3326
Hsp92I	GRCGYC	3 cut(s)	2935, 3235, 3537
Hsp92II	CATG	8 cut(s)	1358, 1550, 2263, 2644, 2810, 3065, 3439, 4035
HspAI	GCGC	6 cut(s)	110, 2662, 2749, 3537, 3745, 4053
KasI	GGCGCC	1 cut(s)	3536
Kpn2I	TCCGGA	2 cut(s)	602, 962
KpnI	GGTACC	1 cut(s)	282
Ksp22I	TGATCA	1 cut(s)	1204
KspAI	GTTAAC	2 cut(s)	1609, 2442
LmnI	GCTCC	7 cut(s)	605, 2062, 2427, 2848, 2860, 3138, 3477
Lsp1109I	GCAGC	9 cut(s)	199, 1451, 2370, 2481, 3004, 3164, 3183, 3186, 3492
LweI	GCATC	8 cut(s)	199, 321, 968, 1089, 1441, 1463, 2736, 3126
MaeI	CTAG	8 cut(s)	179, 1664, 1883, 1970, 2235, 2646, 3440, 4037
MaeII	ACGT	2 cut(s)	2144, 3326
MfeI	CAATTG	1 cut(s)	3819
MflI	RGATCY	8 cut(s)	1487, 1733, 1972, 2000, 2321, 3564, 3577, 3965
MhlI	GDGCHC	1 cut(s)	2424
MlsI	TGGCCA	1 cut(s)	1725
MluNI	TGGCCA	1 cut(s)	1725
Mly113I	GGCGCC	1 cut(s)	3537
MmeI	TCCRAC	5 cut(s)	838, 2223, 3555, 3592, 3998
Mox20I	TGGCCA	1 cut(s)	1725
Mph1103I	ATGCAT	2 cut(s)	1456, 2602
MroI	TCCGGA	2 cut(s)	602, 962
MroXI	GAANNNNTTC	2 cut(s)	1535, 4094
MscI	TGGCCA	1 cut(s)	1725
MslI	CAYNNNNRTG	1 cut(s)	1136
Msp20I	TGGCCA	1 cut(s)	1725
MspA1I	CMGCKG	2 cut(s)	3177, 3808
MspCI	CTTAAG	2 cut(s)	2503, 3839
MspR9I	CCNGG	6 cut(s)	134, 265, 2836, 3030, 3485, 3557
MunI	CAATTG	1 cut(s)	3819
Mva1269I	GAATGC	1 cut(s)	871
MvaI	CCWGG	3 cut(s)	265, 2836, 3485
MvnI	CGCG	1 cut(s)	2744
MwoI	GCNNNNNNNGC	6 cut(s)	118, 956, 1925, 2071, 3177, 3359
NarI	GGCGCC	1 cut(s)	3537
NciI	CCSGG	3 cut(s)	134, 3030, 3557
NdeI	CATATG	3 cut(s)	851, 1037, 1459
NlaIII	CATG	8 cut(s)	1358, 1550, 2263, 2644, 2810, 3065, 3439, 4035
NlaIV	GGNNCC	8 cut(s)	280, 601, 2850, 3197, 3489, 3525, 3538, 4085
NmeAIII	GCCGAG	1 cut(s)	3500
NmuCI	GTSAC	3 cut(s)	566, 2995, 3895
NsbI	TGCGCA	4 cut(s)	111, 2663, 2750, 4054
NsiI	ATGCAT	2 cut(s)	1456, 2602
NspI	RCATGY	2 cut(s)	2263, 2810
NspV	TTCGAA	2 cut(s)	1657, 2535
PacI	TTAATTAA	1 cut(s)	729
PaeR7I	CTCGAG	2 cut(s)	3070, 3222
PagI	TCATGA	1 cut(s)	1354
PceI	AGGCCT	1 cut(s)	3307
PciI	ACATGT	2 cut(s)	2259, 2806
PctI	GAATGC	1 cut(s)	871
PdmI	GAANNNNTTC	2 cut(s)	1535, 4094
PfeI	GAWTC	9 cut(s)	239, 888, 1495, 1879, 2528, 2537, 3299, 3347, 3366
PfoI	TCCNGGA	1 cut(s)	263
PinAI	ACCGGT	1 cut(s)	2920
PluTI	GGCGCC	1 cut(s)	3540
PscI	ACATGT	2 cut(s)	2259, 2806
PshAI	GACNNNNGTC	1 cut(s)	2147
PsiI	TTATAA	4 cut(s)	408, 1071, 1406, 2822
Psp124BI	GAGCTC	1 cut(s)	2424
Psp6I	CCWGG	3 cut(s)	263, 2834, 3483
PspGI	CCWGG	3 cut(s)	263, 2834, 3483
PspN4I	GGNNCC	8 cut(s)	280, 601, 2850, 3197, 3489, 3525, 3538, 4085
PspPI	GGNCC	5 cut(s)	838, 1336, 1622, 3487, 3523
PspXI	VCTCGAGB	1 cut(s)	3070
PsrI	GAACNNNNNNTAC	2 cut(s)	3132, 3164
PstI	CTGCAG	2 cut(s)	2765, 3886
PstNI	CAGNNNCTG	1 cut(s)	3177
PsuI	RGATCY	8 cut(s)	1487, 1733, 1972, 2000, 2321, 3564, 3577, 3965
PvuII	CAGCTG	2 cut(s)	3177, 3808
RsaI	GTAC	9 cut(s)	183, 280, 534, 1107, 1191, 1956, 2755, 3773, 3994
RsaNI	GTAC	9 cut(s)	182, 279, 533, 1106, 1190, 1955, 2754, 3772, 3993
RseI	CAYNNNNRTG	1 cut(s)	1136
SacI	GAGCTC	1 cut(s)	2424
Sau96I	GGNCC	5 cut(s)	838, 1336, 1622, 3487, 3523
ScaI	AGTACT	2 cut(s)	1191, 3773
ScrFI	CCNGG	6 cut(s)	134, 265, 2836, 3030, 3485, 3557
SduI	GDGCHC	1 cut(s)	2424
SfaNI	GCATC	8 cut(s)	199, 321, 968, 1089, 1441, 1463, 2736, 3126
SfcI	CTRYAG	5 cut(s)	805, 2761, 3228, 3290, 3882
SfoI	GGCGCC	1 cut(s)	3538
Sfr274I	CTCGAG	2 cut(s)	3070, 3222
SfuI	TTCGAA	2 cut(s)	1657, 2535
SinI	GGWCC	2 cut(s)	838, 1622
SlaI	CTCGAG	2 cut(s)	3070, 3222
SmiMI	CAYNNNNRTG	1 cut(s)	1136
SmlI	CTYRAG	8 cut(s)	79, 858, 1891, 2503, 2723, 3070, 3222, 3839
SmoI	CTYRAG	8 cut(s)	79, 858, 1891, 2503, 2723, 3070, 3222, 3839
SpeI	ACTAGT	1 cut(s)	178
SseBI	AGGCCT	1 cut(s)	3307
SspDI	GGCGCC	1 cut(s)	3536
SspI	AATATT	1 cut(s)	2672
SspMI	CTAG	8 cut(s)	179, 1664, 1883, 1970, 2235, 2646, 3440, 4037
SstI	GAGCTC	1 cut(s)	2424
StuI	AGGCCT	1 cut(s)	3307
StyD4I	CCNGG	6 cut(s)	132, 263, 2834, 3028, 3483, 3555
StyI	CCWWGG	1 cut(s)	2560
TaiI	ACGT	2 cut(s)	2147, 3329
TaqII	GACCGA	2 cut(s)	483, 2286
TatI	WGTACW	5 cut(s)	532, 1105, 1189, 2753, 3771
TauI	GCSGC	5 cut(s)	600, 2986, 3017, 3516, 3519
TfiI	GAWTC	9 cut(s)	239, 888, 1495, 1879, 2528, 2537, 3299, 3347, 3366
TscAI	CASTG	6 cut(s)	904, 1141, 1440, 1647, 2110, 4051
TseFI	GTSAC	3 cut(s)	566, 2995, 3895
TseI	GCWGC	9 cut(s)	212, 1464, 2383, 2494, 3017, 3171, 3174, 3177, 3480
Tsp45I	GTSAC	3 cut(s)	566, 2995, 3895
TspGWI	ACGGA	4 cut(s)	1529, 2873, 3168, 3208
TspRI	CASTG	6 cut(s)	904, 1141, 1440, 1647, 2110, 4051
Vha464I	CTTAAG	2 cut(s)	2503, 3839
VpaK11BI	GGWCC	2 cut(s)	838, 1622
XapI	RAATTY	6 cut(s)	74, 765, 2056, 2582, 3052, 3374
XbaI	TCTAGA	1 cut(s)	1969
XceI	RCATGY	2 cut(s)	2263, 2810
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3978
XhoI	CTCGAG	2 cut(s)	3070, 3222
XmiI	GTMKAC	1 cut(s)	1159
XmnI	GAANNNNTTC	2 cut(s)	1535, 4094
XspI	CTAG	8 cut(s)	179, 1664, 1883, 1970, 2235, 2646, 3440, 4037
ZrmI	AGTACT	2 cut(s)	1191, 3773
Zsp2I	ATGCAT	2 cut(s)	1456, 2602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.