MD03G1071300.v1.1

disease resistance

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
5809138 .. 5813491
4354 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1071300.v1.1.491

Sequence Viewer

Length: 2859 bp
ATGGCTGAGGCGATCGTTTCTATGGTGCTCGAAGGCTTCAAAAGCCTCATTGTGAACGAAGCCAAGTTCTTAAGTGGAGTCAGCGATCAGTTTGAGCATGCACAGAACGAGCTCTACTTGATGCGGAGCTACCTGAAAGATGCAGATGCAAAACAAGGAGACGATGAATTAGTACACAATTGGGTTGGTATTATTAGAGATGCTGCTTATGATCTGGAGGATATCATTGAGTCCTTTGTCTTGAAAGTGGCTTCCAGGAGGAAAAGAAGTATAAAGCTTGTTCTGAAAAGGTCTGCTTGTATCTTGAGTGAAGGAATTAATCGTCACAAGATTGGGTCTGAGATTGAGAACATTGCAACCAAACTTTCTAAGCTGAAATCGAGCTTAGAAGGTTACAGCATAGCAAGGCAAATAGGGGGGAGTGTAAGTGCTACTTCTTTTGAGAGGCAACAAGATTATCGGTTAACTTATTCTCATGTTGTTGAACACCATTCTGTTGAGTTAAAGGAAGAGATTGACCTGTTGGCCGAAAATTTGGTTAAAAGAAAATACCAAATTGTTTCTATTTGGGGGATGGGTGGTTTGGGGAAGACCACCCTTGCAAAACAGCTTAATAATCATAAGGATGTTAGGGCTGAATTTGATTGTTTTGCTTGGGTATGTGTAACTCAACACTTTCAAAAGGAAGATGTGTGGAAGAAAATTTTTGTTCAACTTACATCTGATGCCGACAAGGACAGAATTGAAAACATGCAGACGGATCAAATTGCAGGGGAGCTTTGTGTACTGCAACGAAAGAAGAAATGTTTAGTGGTTCTTGATGACATGTGGACTCGTGATGCATGGAAATCTTTAAGAGATGGATTTCCAATTAATGATGATACAGGAAGTCGAGTAGTCATCACCACTCGCAACAAAGAAGTCGTTTCGGAGGCGCATGAAAGAGTTTACTTGCACCCAATTCGGCCCCTGAATGATGCTGAAAGCTGGGAACTGTTCAAGAAGATAGTAACGTTTGGAAGAGATAACACAAACTCGGAAATCGATAGAGGGAAGGAAGAACTAGGGAAGGAGATGCTTAAACATTGCGGGGGTTCGCCATTGGCTATCATCGTGCTTGCAGGACTTCTAGCTAGAAAAGAAACGGTTGAAGATTGGAAGACTGTGCAAAAGAATGTTGGCGCATACATAGGGAGAGGCACAGACCTTGAATCACGGTACAAAGGTGAAAATAGTGAAGGTACCTCACGTGTATTGGCATTGAGCTATGAGAGCTTACCGTATCATTTAAAACCCTGCTTCCTATATTTGGGTCATTTTCCTGAGGATCGTGAGATACCAGTGAAAAGATTGATTCAATTGTGGATTGCAGAAGGTTTTATCTATTCAGCATCTGGAGAATTGTTGGAAGATGTGGCATACAATTGCTTAAATGAGTTGGTCATAAGATGTATGGTTCAAGTTGGACATCCTGGTTCAACCAATAAGATTAAATCTTGTCGCCTCCATGATCTTATGCGAGATCTGTGCTTGTTACAGGCGAAACATGAGAATTTTTTCCATATTTCAGATTCTTTTGCCAGGGCGACCCCGGTATCACCAAGTGGTAAAGTTCGAAGACATGTCATCTATTTAGACAAAATAGGTGATATATTAAATCCCCCGACAGATGGTCAACTTAGGTCTTTGTTATACTTTACGTCAGATGGGCTATGGTTTGGAAAACCAATTGGACAATGGTTCCAGAATATCAAATTGCTTAGAGTTTTGAGTTTCGAAGTGTTTGGAAGAGAAGTAGAGCTACCGAGCACAATTGGGAATCTAGTGCACTTGAGGTTTTTCAGTCTAGAGGGTTGTGTCGTAACACGATTTCCATCATCTATGTCTAAGTTGGTATGCTTGCAAACTCTAAATTTACGTTGCTTCAAGCTTAAAGAGATGAAAAGGAGTTTCAGAAATCTGCACAATGTGATTCGACATTTGGGACAATTGAGACACTTATATTTACCAGCTCTAGGGTTCGGACTCAGAGCAGCAGAGAAGAGAGTCTTGCCATTGGCTACTCTTGGAAATTTGCAGACATTAGTCAATGCTTCGAACTATGATTGTCGTTTGAGTGATCTTGCTGGATTAACCAATCTTAGGAAAATGTCCATCGTTATAGTACCACCGGAAGATGAGATGAATAACGTTGATTCTGAAACCATACAATTCAACCGTCTTCAGTCGCTGTCTCTGGAATCTTCAACTGAGGTAGAGGTTTCGGTAAGGATTCTACTAAGCTGTCGTAATATATACAAGCTGAAACTTGATGGGCCAATTGCAGGGTTACCGAAAGACCTCCTGGACTATCCAAACCTGACCAAGATAAAGCTTGACAGAACTTCTCGCATGGACGAGCACATAAAAATACTAGAGCAGCTGCCGCATTTGAAATTTCTTTGGCTTGATGCCGTCACTTTGGAGATTCCAATACTTGTCTTCTCCAAACAAGGCTTTCCTTGTCTCGAATTTCTTTCCATTTCTTGGATAGATCAACTAAAGGAGTGGAGGGTGGAGGAAGGAGCCATGAATTGCCTCCGCAGATTGCGAGTTATATGGTGCCAACGGTTGAAGGAAGTTCCAGATGGGCTTCGATATATTGAAAAACTCGAGGAATTAACCATCAAGATGATGCCCCCTGGATTCTGTAGTGCACTTCGGAAAGGAGGAAAGGATTTTGACAAGATCAAACATGTCGCTTCTGTTAACTTGGAAGATTGGAAGATGCCTCCATCTCACAAAATCAGATCCGAGCGCAACGAGAGGCCGGATTGGGAGCAGTTCAGTTCTGAGGAATCTACAGCGGATGCTGTGTGA

Protein Analysis

953

Amino Acids

108.93

Weight (kDa)

8.21

Isoelectric Point (pI)

42.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 5 - 90 5.1e-21 Rx N-terminal domain
NB-ARC PF00931 170 - 338 1.2e-39 NB-ARC domain
WHD_DRP PF23559 440 - 510 5.2e-20 Disease resistance protein Winged helix domain
LRR_14 PF23598 560 - 891 4.3e-26 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000069)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G50180 AT1G53350 AT1G58390 AT1G58390 AT1G58400 AT1G58400 AT1G58400 AT1G58410 AT1G58410 AT1G58410 AT1G58410 AT1G58602 AT1G58602 AT1G58807 AT1G58807 AT1G58848 AT1G58848 AT1G59124 AT1G59124 AT1G59218 AT1G59218 AT1G59218 AT1G59620 AT1G59780 AT1G59780 AT5G35450 AT5G35450 AT5G43470 AT5G43470 AT5G43470 AT5G43470 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620
fragaria_vesca FvH4_4g04072 FvH4_4g22931 FvH4_4g22931 FvH4_4g22940 FvH4_6g49940 FvH4_6g49940 FvH4_7g08100 FvH4_7g08870 FvH4_7g08870 FvH4_7g09280 FvH4_7g09290 FvH4_7g15190 FvH4_7g15200 FvH4_7g15240 FvH4_7g15240 FvH4_7g33440
malus_domestica MD00G1174600.v1.1 MD01G1113700.v1.1 MD03G1071300.v1.1 MD04G1041500.v1.1 MD04G1238000.v1.1 MD07G1029000.v1.1 MD07G1092100.v1.1 MD07G1092300.v1.1 MD07G1092600.v1.1 MD12G1256300.v1.1 MD13G1128200.v1.1 MD13G1128400.v1.1 MD17G1268000.v1.1
prunus_persica Prupe.1G041300_v2.0.a1 Prupe.1G041300_v2.0.a1 Prupe.1G042900_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043600_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G046700_v2.0.a1 Prupe.1G047700_v2.0.a1 Prupe.1G047900_v2.0.a1 Prupe.1G048000_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G049900_v2.0.a1 Prupe.1G051500_v2.0.a1 Prupe.1G051800_v2.0.a1 Prupe.1G051900_v2.0.a1 Prupe.1G052200_v2.0.a1 Prupe.1G194900_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117300_v2.0.a1 Prupe.2G117400_v2.0.a1 Prupe.2G117500_v2.0.a1 Prupe.2G117700_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G119900_v2.0.a1
pyrus_communis pycom03g05750 pycom04g21110 pycom07g07530 pycom07g07590 pycom13g11110 pycom13g11140 pycom13g11160 pycom13g11170 pycom17g26680
rosa_chinensis RchiOBHm_Chr1g0341231 RchiOBHm_Chr1g0344091 RchiOBHm_Chr1g0344161 RchiOBHm_Chr1g0345001 RchiOBHm_Chr1g0345351 RchiOBHm_Chr1g0345371 RchiOBHm_Chr1g0345391 RchiOBHm_Chr1g0345531 RchiOBHm_Chr1g0345551 RchiOBHm_Chr1g0345571 RchiOBHm_Chr1g0345581 RchiOBHm_Chr1g0345661 RchiOBHm_Chr1g0345691 RchiOBHm_Chr1g0345761 RchiOBHm_Chr1g0345791 RchiOBHm_Chr1g0345821 RchiOBHm_Chr1g0345911 RchiOBHm_Chr1g0345941 RchiOBHm_Chr1g0357611 RchiOBHm_Chr1g0357911 RchiOBHm_Chr1g0357921 RchiOBHm_Chr1g0357931 RchiOBHm_Chr1g0357971 RchiOBHm_Chr1g0358121 RchiOBHm_Chr1g0383491 RchiOBHm_Chr1g0383511 RchiOBHm_Chr1g0383521 RchiOBHm_Chr3g0480581 RchiOBHm_Chr4g0394341 RchiOBHm_Chr4g0394361 RchiOBHm_Chr4g0394411 RchiOBHm_Chr4g0394441 RchiOBHm_Chr4g0407681 RchiOBHm_Chr4g0429191 RchiOBHm_Chr4g0429201 RchiOBHm_Chr4g0429211 RchiOBHm_Chr4g0429221 RchiOBHm_Chr6g0265091
rosa_laevigata RLG00000007088 RLG00000008700 RLG00000009190 RLG00000009702 RLG00000014210 RLG00000028829 RLG00000028833 RLG00000028837 RLG00000028838 RLG00000028921 RLG00000028926
rosa_multiflora Rmu_co8366955.1_g000001 Rmu_co8394205.1_g000001 Rmu_sc0000019.1_g000001 Rmu_sc0000054.1_g000031 Rmu_sc0000054.1_g000033 Rmu_sc0000200.1_g000002 Rmu_sc0000200.1_g000007 Rmu_sc0000200.1_g000018 Rmu_sc0000200.1_g000020 Rmu_sc0000200.1_g000021 Rmu_sc0000251.1_g000012 Rmu_sc0000251.1_g000015 Rmu_sc0000251.1_g000028 Rmu_sc0000253.1_g000015 Rmu_sc0000255.1_g000045 Rmu_sc0000255.1_g000046 Rmu_sc0001292.1_g000013 Rmu_sc0001292.1_g000018 Rmu_sc0001292.1_g000028 Rmu_sc0001292.1_g000029 Rmu_sc0001349.1_g000006 Rmu_sc0001349.1_g000014 Rmu_sc0001582.1_g000006 Rmu_sc0001582.1_g000018 Rmu_sc0001582.1_g000020 Rmu_sc0001692.1_g000007 Rmu_sc0001692.1_g000024 Rmu_sc0001692.1_g000026 Rmu_sc0001692.1_g000029 Rmu_sc0001692.1_g000030 Rmu_sc0001835.1_g000006 Rmu_sc0001835.1_g000010 Rmu_sc0002071.1_g000005 Rmu_sc0002276.1_g000002 Rmu_sc0002276.1_g000009 Rmu_sc0002329.1_g000018 Rmu_sc0002329.1_g000023 Rmu_sc0002329.1_g000025 Rmu_sc0002523.1_g000005 Rmu_sc0003573.1_g000005 Rmu_sc0003573.1_g000006 Rmu_sc0004099.1_g000021 Rmu_sc0005812.1_g000009 Rmu_sc0006271.1_g000002 Rmu_sc0006287.1_g000038 Rmu_sc0006439.1_g000008 Rmu_sc0007456.1_g000004 Rmu_sc0007581.1_g000009 Rmu_sc0007849.1_g000014 Rmu_sc0008115.1_g000012 Rmu_sc0010521.1_g000004 Rmu_sc0012471.1_g000017 Rmu_sc0014762.1_g000001 Rmu_sc0015150.1_g000003 Rmu_sc0017221.1_g000001 Rmu_sc0017299.1_g000001 Rmu_sc0017299.1_g000002 Rmu_sc0021457.1_g000001 Rmu_sc0022067.1_g000001 Rmu_sc0033275.1_g000001 Rmu_ssc0000245.1_g000012 Rmu_ssc0000359.1_g000035 Rmu_ssc0000359.1_g000067 Rmu_ssc0000359.1_g000072 Rmu_ssc0000434.1_g000005 Rmu_ssc0000434.1_g000007
rosa_roxburghii Rroxscaffold_4G00298420 Rroxscaffold_4G00298720 Rroxscaffold_4G00308990 Rroxscaffold_4G00309000 Rroxscaffold_4G00309010 Rroxscaffold_4G00309050 Rroxscaffold_4G00309070 Rroxscaffold_4G00309100 Rroxscaffold_4G00310030 Rroxscaffold_4G00310050 Rroxscaffold_4G00311880 Rroxscaffold_5G00339420 Rroxscaffold_5G00339450 Rroxscaffold_5G00344880 Rroxscaffold_5G00352270 Rroxscaffold_5G00362240 Rroxscaffold_5G00370840 Rroxscaffold_7G00202970
rosa_rugosa Rorug01G0159100.1 Rorug01G0159200.1 Rorug01G0171700 Rorug01G0171900 Rorug01G0172000 Rorug01G0191700 Rorug01G0191800 Rorug01G0256900 Rorug01G0257000 Rorug01G0257100 Rorug03G0198000 Rorug03G0366300.1 Rorug03G0366400.1 Rorug03G0366500.1 Rorug04G0081200 Rorug04G0081200 Rorug04G0081200 Rorug04G0233700 Rorug04G0233800 Rorug04G0233800 Rorug06G0013300
rosa_samantha Rh1CG138800 Rh1CG161300 Rh1CG173800 Rh1CG179800 Rh1CG180100 Rh1CG180500 Rh1CG180800 Rh1CG180900 Rh1CG194100 Rh1DG205100 Rh3AG236300 Rh4AG052000 Rh4AG052100 Rh4AG145900 Rh4AG289700 Rh4AG289800 Rh6AG136800 Rh6AG137300 Rh6BG133600 Rh6CG132000 Rh6CG134000 Rh6DG119300
rosa_wichuraiana Rw0G003420 Rw1G015500 Rw1G016110 Rw1G016180 Rw1G016210 Rw1G016230 Rw1G016280 Rw1G016440 Rw1G016450 Rw1G016460 Rw1G016480 Rw1G017490 Rw1G024140 Rw1G024160 Rw3G022530 Rw4G004140 Rw4G004190 Rw4G011850 Rw6G011800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1241
AccB1I GGYRCC 2 cut(s) 1241, 2601
AccB7I CCANNNNNTGG 1 cut(s) 2526
AciI CCGC 5 cut(s) 124, 1089, 2426, 2581, 2846
AclI AACGTT 2 cut(s) 1013, 2190
AclWI GGATC 3 cut(s) 768, 1335, 2784
AcoI YGGCCR 1 cut(s) 525
AcsI RAATTY 8 cut(s) 532, 638, 702, 1552, 1912, 2071, 2435, 2510
AcuI CTGAAG 1 cut(s) 2207
AcvI CACGTG 1 cut(s) 1250
AdeI CACNNNGTG 2 cut(s) 1604, 1969
AfaI GTAC 5 cut(s) 174, 786, 1220, 1243, 2166
AfiI CCNNNNNNNGG 6 cut(s) 1309, 1670, 2015, 2142, 2324, 2526
AflII CTTAAG 1 cut(s) 70
AflIII ACRYGT 4 cut(s) 825, 1249, 1621, 2734
AhdI GACNNNNNGTC 1 cut(s) 1671
AjnI CCWGG 5 cut(s) 254, 1471, 1580, 2343, 2680
Alw21I GWGCWC 6 cut(s) 30, 114, 1811, 1830, 2403, 2698
Alw26I GTCTC 4 cut(s) 153, 1987, 2238, 2510
Alw44I GTGCAC 2 cut(s) 1826, 2694
AlwI GGATC 3 cut(s) 768, 1335, 2784
AlwNI CAGNNNCTG 2 cut(s) 1394, 2230
Ama87I CYCGRG 1 cut(s) 2651
AoxI GGCC 4 cut(s) 525, 965, 2315, 2807
ApaLI GTGCAC 2 cut(s) 1826, 2694
ApeKI GCWGC 4 cut(s) 203, 2033, 2419, 2422
ApoI RAATTY 8 cut(s) 532, 638, 702, 1552, 1912, 2071, 2435, 2510
AseI ATTAAT 2 cut(s) 318, 873
Asp700I GAANNNNTTC 1 cut(s) 1556
Asp718I GGTACC 1 cut(s) 1241
AspLEI GCGC 3 cut(s) 937, 1184, 2799
AspS9I GGNCC 2 cut(s) 966, 2315
AsuC2I CCSGG 1 cut(s) 1592
AsuHPI GGTGA 4 cut(s) 895, 1238, 1590, 1658
AsuII TTCGAA 3 cut(s) 1615, 1776, 2096
AvaI CYCGRG 1 cut(s) 2651
AxyI CCTNAGG 1 cut(s) 1323
BaeGI GKGCMC 2 cut(s) 1830, 2698
BaeI ACNNNNGTAYC 4 cut(s) 1210, 1243, 1578, 1611
BanI GGYRCC 2 cut(s) 1241, 2601
BanII GRGCYC 1 cut(s) 114
BarI GAAGNNNNNNTAC 2 cut(s) 1785, 1817
BauI CACGAG 1 cut(s) 834
BbrPI CACGTG 1 cut(s) 1250
BbsI GAAGAC 5 cut(s) 596, 1166, 1624, 2213, 2473
Bbv12I GWGCWC 6 cut(s) 30, 114, 1811, 1830, 2403, 2698
BbvCI CCTCAGC 1 cut(s) 6
BbvI GCAGC 4 cut(s) 190, 2045, 2409, 2431
BceAI ACGGC 1 cut(s) 2438
BcgI CGANNNNNNTGC 4 cut(s) 944, 978, 1509, 1543
BciT130I CCWGG 5 cut(s) 256, 1473, 1582, 2345, 2682
BcnI CCSGG 1 cut(s) 1592
BcoDI GTCTC 4 cut(s) 153, 1987, 2238, 2510
BfaI CTAG 7 cut(s) 1064, 1130, 1134, 1823, 1847, 2015, 2414
BfmI CTRYAG 2 cut(s) 2689, 2841
BfrI CTTAAG 1 cut(s) 70
BglII AGATCT 1 cut(s) 1522
BisI GCNGC 5 cut(s) 204, 2034, 2420, 2423, 2426
BlsI GCNGC 5 cut(s) 205, 2035, 2421, 2424, 2427
Bme1390I CCNGG 6 cut(s) 256, 1473, 1582, 1592, 2345, 2682
BmeRI GACNNNNNGTC 1 cut(s) 1671
BmeT110I CYCGRG 1 cut(s) 2651
BmgT120I GGNCC 2 cut(s) 966, 2315
BmiI GGNNCC 5 cut(s) 968, 1243, 1742, 2566, 2603
BmrFI CCNGG 6 cut(s) 256, 1473, 1582, 1592, 2345, 2682
BoxI GACNNNNGTC 1 cut(s) 2084
BpiI GAAGAC 5 cut(s) 596, 1166, 1624, 2213, 2473
BpmI CTGGAG 2 cut(s) 236, 1416
Bpu10I CCTNAGC 1 cut(s) 6
Bpu14I TTCGAA 3 cut(s) 1615, 1776, 2096
BpuEI CTTGAG 2 cut(s) 325, 1852
BpuMI CCSGG 1 cut(s) 1592
Bsa29I ATCGAT 1 cut(s) 1044
BsaAI YACGTR 1 cut(s) 1250
BsaBI GATNNNNATC 1 cut(s) 1873
BsaJI CCNNGG 3 cut(s) 1581, 1590, 2680
BsaWI WCCGGW 1 cut(s) 2170
BsaXI ACNNNNNCTCC 2 cut(s) 412, 442
Bsc4I CCNNNNNNNGG 6 cut(s) 1309, 1670, 2015, 2142, 2324, 2526
Bse1I ACTGG 1 cut(s) 1340
Bse21I CCTNAGG 1 cut(s) 1323
Bse3DI GCAATG 2 cut(s) 351, 1084
Bse8I GATNNNNATC 1 cut(s) 1873
BseBI CCWGG 5 cut(s) 256, 1473, 1582, 2345, 2682
BseCI ATCGAT 1 cut(s) 1044
BseDI CCNNGG 3 cut(s) 1581, 1590, 2680
BseGI GGATG 4 cut(s) 579, 631, 1468, 2854
BseJI GATNNNNATC 1 cut(s) 1873
BseLI CCNNNNNNNGG 6 cut(s) 1309, 1670, 2015, 2142, 2324, 2526
BseMI GCAATG 2 cut(s) 351, 1084
BseMII CTCAG 5 cut(s) 330, 1314, 2041, 2241, 2823
BseNI ACTGG 1 cut(s) 1340
BseSI GKGCMC 2 cut(s) 1830, 2698
BseXI GCAGC 4 cut(s) 190, 2045, 2409, 2431
BseYI CCCAGC 1 cut(s) 987
BsgI GTGCAG 1 cut(s) 1946
Bsh1285I CGRYCG 1 cut(s) 15
BshFI GGCC 4 cut(s) 527, 967, 2317, 2809
BshNI GGYRCC 2 cut(s) 1241, 2601
BshVI ATCGAT 1 cut(s) 1044
BsiEI CGRYCG 1 cut(s) 15
BsiHKAI GWGCWC 6 cut(s) 30, 114, 1811, 1830, 2403, 2698
BsiHKCI CYCGRG 1 cut(s) 2651
BsiSI CCGG 3 cut(s) 1592, 2171, 2810
BslFI GGGAC 1 cut(s) 1998
BslI CCNNNNNNNGG 6 cut(s) 1309, 1670, 2015, 2142, 2324, 2526
BsmAI GTCTC 4 cut(s) 153, 1987, 2238, 2510
BsmBI CGTCTC 1 cut(s) 153
BsmFI GGGAC 1 cut(s) 1998
BsnI GGCC 4 cut(s) 527, 967, 2317, 2809
BsoBI CYCGRG 1 cut(s) 2651
Bsp119I TTCGAA 3 cut(s) 1615, 1776, 2096
Bsp1286I GDGCHC 6 cut(s) 30, 114, 1811, 1830, 2403, 2698
BspACI CCGC 5 cut(s) 124, 1089, 2426, 2581, 2846
BspANI GGCC 4 cut(s) 527, 967, 2317, 2809
BspCNI CTCAG 5 cut(s) 331, 1315, 2040, 2242, 2824
BspDI ATCGAT 1 cut(s) 1044
BspLI GGNNCC 5 cut(s) 968, 1243, 1742, 2566, 2603
BspPI GGATC 3 cut(s) 768, 1335, 2784
BspT104I TTCGAA 3 cut(s) 1615, 1776, 2096
BspT107I GGYRCC 2 cut(s) 1241, 2601
BspTI CTTAAG 1 cut(s) 70
BsrDI GCAATG 2 cut(s) 351, 1084
BsrI ACTGG 1 cut(s) 1340
BssECI CCNNGG 3 cut(s) 1581, 1590, 2680
BssSI CACGAG 1 cut(s) 834
Bst2BI CACGAG 1 cut(s) 834
Bst2UI CCWGG 5 cut(s) 256, 1473, 1582, 2345, 2682
Bst4CI ACNGT 7 cut(s) 996, 1147, 1165, 1218, 1281, 2219, 2610
Bst6I CTCTTC 4 cut(s) 504, 1015, 1783, 2036
BstAFI CTTAAG 1 cut(s) 70
BstBAI YACGTR 1 cut(s) 1250
BstBI TTCGAA 3 cut(s) 1615, 1776, 2096
BstC8I GCNNGC 3 cut(s) 99, 1119, 1901
BstEII GGTNACC 1 cut(s) 2328
BstF5I GGATG 4 cut(s) 579, 631, 1468, 2854
BstHHI GCGC 3 cut(s) 937, 1184, 2799
BstMAI GTCTC 4 cut(s) 153, 1987, 2238, 2510
BstMCI CGRYCG 1 cut(s) 15
BstMWI GCNNNNNNNGC 3 cut(s) 42, 1272, 2425
BstNI CCWGG 5 cut(s) 256, 1473, 1582, 2345, 2682
BstNSI RCATGY 5 cut(s) 101, 754, 829, 1625, 2738
BstPAI GACNNNNGTC 1 cut(s) 2084
BstPI GGTNACC 1 cut(s) 2328
BstSCI CCNGG 6 cut(s) 254, 1471, 1580, 1590, 2343, 2680
BstSFI CTRYAG 2 cut(s) 2689, 2841
BstSLI GKGCMC 2 cut(s) 1830, 2698
BstV1I GCAGC 4 cut(s) 190, 2045, 2409, 2431
BstV2I GAAGAC 5 cut(s) 596, 1166, 1624, 2213, 2473
BstX2I RGATCY 2 cut(s) 1522, 2789
BstYI RGATCY 2 cut(s) 1522, 2789
Bsu15I ATCGAT 1 cut(s) 1044
Bsu36I CCTNAGG 1 cut(s) 1323
BsuRI GGCC 4 cut(s) 527, 967, 2317, 2809
BsuTUI ATCGAT 1 cut(s) 1044
BtsCI GGATG 4 cut(s) 579, 631, 1468, 2854
BtsIMutI CAGTG 1 cut(s) 1347
Cac8I GCNNGC 3 cut(s) 99, 1119, 1901
CaiI CAGNNNCTG 2 cut(s) 1394, 2230
CfoI GCGC 3 cut(s) 937, 1184, 2799
Cfr13I GGNCC 2 cut(s) 966, 2315
ClaI ATCGAT 1 cut(s) 1044
Csp6I GTAC 5 cut(s) 173, 785, 1219, 1242, 2165
CviQI GTAC 5 cut(s) 173, 785, 1219, 1242, 2165
DraI TTTAAA 1 cut(s) 1290
DraIII CACNNNGTG 2 cut(s) 1604, 1969
DriI GACNNNNNGTC 1 cut(s) 1671
EaeI YGGCCR 1 cut(s) 525
Eam1104I CTCTTC 4 cut(s) 504, 1015, 1783, 2036
Eam1105I GACNNNNNGTC 1 cut(s) 1671
EarI CTCTTC 4 cut(s) 504, 1015, 1783, 2036
Ecl136II GAGCTC 1 cut(s) 112
Eco24I GRGCYC 1 cut(s) 114
Eco32I GATATC 1 cut(s) 223
Eco53kI GAGCTC 1 cut(s) 112
Eco57I CTGAAG 1 cut(s) 2207
Eco72I CACGTG 1 cut(s) 1250
Eco81I CCTNAGG 1 cut(s) 1323
Eco88I CYCGRG 1 cut(s) 2651
Eco91I GGTNACC 1 cut(s) 2328
EcoICRI GAGCTC 1 cut(s) 112
EcoO65I GGTNACC 1 cut(s) 2328
EcoRII CCWGG 5 cut(s) 254, 1471, 1580, 2343, 2680
EcoRV GATATC 1 cut(s) 223
EcoT22I ATGCAT 1 cut(s) 844
EcoT38I GRGCYC 1 cut(s) 114
Esp3I CGTCTC 1 cut(s) 153
FalI AAGNNNNNCTT 6 cut(s) 280, 312, 418, 450, 2033, 2065
FaqI GGGAC 1 cut(s) 1998
FauI CCCGC 1 cut(s) 1082
Fnu4HI GCNGC 5 cut(s) 204, 2034, 2420, 2423, 2426
FokI GGATG 3 cut(s) 586, 638, 1455
FriOI GRGCYC 1 cut(s) 114
Fsp4HI GCNGC 5 cut(s) 204, 2034, 2420, 2423, 2426
FspBI CTAG 7 cut(s) 1064, 1130, 1134, 1823, 1847, 2015, 2414
GlaI GCGC 3 cut(s) 936, 1183, 2798
GluI GCNGC 5 cut(s) 204, 2034, 2420, 2423, 2426
GsaI CCCAGC 1 cut(s) 991
GsuI CTGGAG 2 cut(s) 236, 1416
HaeIII GGCC 4 cut(s) 527, 967, 2317, 2809
HapII CCGG 3 cut(s) 1592, 2171, 2810
HhaI GCGC 3 cut(s) 937, 1184, 2799
Hin6I GCGC 3 cut(s) 935, 1182, 2797
HinP1I GCGC 3 cut(s) 935, 1182, 2797
HincII GTYRAC 3 cut(s) 465, 1676, 2749
HindII GTYRAC 3 cut(s) 465, 1676, 2749
HindIII AAGCTT 3 cut(s) 275, 1928, 2372
HpaI GTTAAC 2 cut(s) 465, 2749
HpaII CCGG 3 cut(s) 1592, 2171, 2810
HphI GGTGA 4 cut(s) 895, 1238, 1590, 1658
HpyAV CCTTC 9 cut(s) 26, 305, 383, 1048, 1063, 1232, 1367, 2555, 2608
HpyCH4III ACNGT 7 cut(s) 996, 1147, 1165, 1218, 1281, 2219, 2610
HpyCH4IV ACGT 5 cut(s) 1013, 1249, 1700, 1918, 2190
HpyF10VI GCNNNNNNNGC 3 cut(s) 42, 1272, 2425
HpySE526I ACGT 5 cut(s) 1013, 1249, 1700, 1918, 2190
HspAI GCGC 3 cut(s) 935, 1182, 2797
KpnI GGTACC 1 cut(s) 1245
KspAI GTTAAC 2 cut(s) 465, 2749
LmnI GCTCC 4 cut(s) 126, 775, 2564, 2818
Lsp1109I GCAGC 4 cut(s) 190, 2045, 2409, 2431
MaeI CTAG 7 cut(s) 1064, 1130, 1134, 1823, 1847, 2015, 2414
MaeII ACGT 5 cut(s) 1013, 1249, 1700, 1918, 2190
MaeIII GTNAC 8 cut(s) 323, 392, 664, 1009, 1533, 1861, 2328, 2455
MfeI CAATTG 7 cut(s) 178, 1358, 1423, 1728, 1812, 1988, 2319
MflI RGATCY 2 cut(s) 1522, 2789
MhlI GDGCHC 6 cut(s) 30, 114, 1811, 1830, 2403, 2698
MlyI GAGTC 5 cut(s) 87, 239, 826, 2019, 2055
MmeI TCCRAC 2 cut(s) 1386, 1444
Mph1103I ATGCAT 1 cut(s) 844
MroXI GAANNNNTTC 1 cut(s) 1556
MslI CAYNNNNRTG 2 cut(s) 624, 2669
MspA1I CMGCKG 2 cut(s) 2422, 2846
MspCI CTTAAG 1 cut(s) 70
MspI CCGG 3 cut(s) 1592, 2171, 2810
MspR9I CCNGG 6 cut(s) 256, 1473, 1582, 1592, 2345, 2682
MunI CAATTG 7 cut(s) 178, 1358, 1423, 1728, 1812, 1988, 2319
MvaI CCWGG 5 cut(s) 256, 1473, 1582, 2345, 2682
MwoI GCNNNNNNNGC 3 cut(s) 42, 1272, 2425
NciI CCSGG 1 cut(s) 1592
NlaIV GGNNCC 5 cut(s) 968, 1243, 1742, 2566, 2603
NmuCI GTSAC 2 cut(s) 323, 2455
NsiI ATGCAT 1 cut(s) 844
NspI RCATGY 5 cut(s) 101, 754, 829, 1625, 2738
NspV TTCGAA 3 cut(s) 1615, 1776, 2096
PaeI GCATGC 1 cut(s) 101
PaeR7I CTCGAG 1 cut(s) 2651
PciI ACATGT 3 cut(s) 825, 1621, 2734
PdmI GAANNNNTTC 1 cut(s) 1556
PflMI CCANNNNNTGG 1 cut(s) 2526
PfoI TCCNGGA 2 cut(s) 254, 2343
PkrI GCNGC 5 cut(s) 205, 2035, 2421, 2424, 2427
Ple19I CGATCG 1 cut(s) 15
PleI GAGTC 5 cut(s) 86, 238, 826, 2019, 2054
PmaCI CACGTG 1 cut(s) 1250
PmlI CACGTG 1 cut(s) 1250
PpsI GAGTC 5 cut(s) 86, 238, 826, 2019, 2054
Ppu21I YACGTR 1 cut(s) 1250
PscI ACATGT 3 cut(s) 825, 1621, 2734
PshAI GACNNNNGTC 1 cut(s) 2084
PshBI ATTAAT 2 cut(s) 318, 873
Psp124BI GAGCTC 1 cut(s) 114
Psp1406I AACGTT 2 cut(s) 1013, 2190
Psp6I CCWGG 5 cut(s) 254, 1471, 1580, 2343, 2680
PspCI CACGTG 1 cut(s) 1250
PspEI GGTNACC 1 cut(s) 2328
PspFI CCCAGC 1 cut(s) 987
PspGI CCWGG 5 cut(s) 254, 1471, 1580, 2343, 2680
PspN4I GGNNCC 5 cut(s) 968, 1243, 1742, 2566, 2603
PspPI GGNCC 2 cut(s) 966, 2315
PspXI VCTCGAGB 1 cut(s) 2651
PsrI GAACNNNNNNTAC 2 cut(s) 98, 130
PstNI CAGNNNCTG 2 cut(s) 1394, 2230
PsuI RGATCY 2 cut(s) 1522, 2789
PvuI CGATCG 1 cut(s) 15
PvuII CAGCTG 1 cut(s) 2422
RsaI GTAC 5 cut(s) 174, 786, 1220, 1243, 2166
RsaNI GTAC 5 cut(s) 173, 785, 1219, 1242, 2165
RseI CAYNNNNRTG 2 cut(s) 624, 2669
SacI GAGCTC 1 cut(s) 114
SatI GCNGC 5 cut(s) 204, 2034, 2420, 2423, 2426
Sau96I GGNCC 2 cut(s) 966, 2315
SchI GAGTC 5 cut(s) 87, 239, 826, 2019, 2055
ScrFI CCNGG 6 cut(s) 256, 1473, 1582, 1592, 2345, 2682
SduI GDGCHC 6 cut(s) 30, 114, 1811, 1830, 2403, 2698
SfcI CTRYAG 2 cut(s) 2689, 2841
Sfr274I CTCGAG 1 cut(s) 2651
SfuI TTCGAA 3 cut(s) 1615, 1776, 2096
SlaI CTCGAG 1 cut(s) 2651
SmiMI CAYNNNNRTG 2 cut(s) 624, 2669
SmlI CTYRAG 4 cut(s) 70, 304, 1831, 2651
SmoI CTYRAG 4 cut(s) 70, 304, 1831, 2651
SphI GCATGC 1 cut(s) 101
SsiI CCGC 5 cut(s) 124, 1089, 2426, 2581, 2846
SspMI CTAG 7 cut(s) 1064, 1130, 1134, 1823, 1847, 2015, 2414
SstI GAGCTC 1 cut(s) 114
StyD4I CCNGG 6 cut(s) 254, 1471, 1580, 1590, 2343, 2680
TaaI ACNGT 7 cut(s) 996, 1147, 1165, 1218, 1281, 2219, 2610
TaiI ACGT 5 cut(s) 1016, 1252, 1703, 1921, 2193
TatI WGTACW 2 cut(s) 172, 784
TauI GCSGC 1 cut(s) 2428
TscAI CASTG 1 cut(s) 1347
TseFI GTSAC 2 cut(s) 323, 2455
TseI GCWGC 4 cut(s) 203, 2033, 2419, 2422
Tsp45I GTSAC 2 cut(s) 323, 2455
TspDTI ATGAA 5 cut(s) 180, 954, 1955, 2198, 2585
TspGWI ACGGA 1 cut(s) 773
TspRI CASTG 1 cut(s) 1347
Van91I CCANNNNNTGG 1 cut(s) 2526
Vha464I CTTAAG 1 cut(s) 70
VneI GTGCAC 2 cut(s) 1826, 2694
VspI ATTAAT 2 cut(s) 318, 873
XapI RAATTY 8 cut(s) 532, 638, 702, 1552, 1912, 2071, 2435, 2510
XbaI TCTAGA 1 cut(s) 1846
XceI RCATGY 5 cut(s) 101, 754, 829, 1625, 2738
XcmI CCANNNNNNNNNTGG 1 cut(s) 1734
XhoI CTCGAG 1 cut(s) 2651
XmnI GAANNNNTTC 1 cut(s) 1556
XspI CTAG 7 cut(s) 1064, 1130, 1134, 1823, 1847, 2015, 2414
Zsp2I ATGCAT 1 cut(s) 844
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.