Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000069

Physical Location & Seq

Genomic Coordinates Forward (+)

38659209 .. 38665844

Gene Structure 6636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G017490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2970 bp

ATGGCTGAAGGTGTTGTTACTGTTGTGGCTGAAGGGATCAAGCCCCTGGGAGATTTCATCATTCAGCAAGCGAAGTTCTTGAGTGGAGTCAGCTATCAAGTTGAGCTTGCACAAGTTGAACTTCACTTGATCCGGGGCTTTCTCAGAGATGCAGATGCAAGACAAGGAGACGAAGAAGTAGTACGCATTTGGGTTAAACTGATTAGAGATGCTGCTTATGACTTGGACGATATCATTGAATCTTTTGCCTTGAAAGTAGCTTCCAGGAGGAGAGGAGGTACTGTGAAGATTGCTCTCAAAAGGTTTGCCAGCATCTTTAATGAAGGAGTTAATCTATACAAGATTGGGTCCGAAATTGAGGATATTATGACCAAACTTTCTCATCTGAGGGCCAGTTTGCTGAGTTATAATATCAGGCAAATAAGTGGGGGTGAAGGTATCGCTTCTTCTTTTAAGAGGCAACTAGACCGGCGGCTAACTTACGCTCATGAAGTTGAAAGTCATATTGTTGGCTTAGAGGAAAACACAGATATACTGGTTGAGGAGTTGGTGGGAGAAGGAAAGCGTCACCTTGTTGTTTCTATTTGGGGGATGGGCGGCTCCGGAAAAACCACTCTTGCAAAACAAGTTTTTCGTCAAAATGAGGTGAAACGTCATTTTGATTGTTTCGCTTGGATTTGTATATCTCAACAATGTGAAGGCAGAGAGGTCTTCGAAGAAATTTTAATTAAACTCACTTCCCCAACAATAGAGAAAAGGAAAGAAATTTCCAAAATGAAAAAGGATGAAATAGCAATGGAGGTCTGTAGTATCCAAAGAGAAAAGAGATGTCTGGTGGTCCTTGATGACATATGGACTCAAGAGGCTTGGCATTCGATAAAAGCTGGATTCCCAATCAATGAGGAAACAGAGAGCCGGATATTACTCACTACTCGCAAGAAAGAAGTCGCCTCGCTTGCATCCAAAAATGATCATCTCCACCAACCTCGACCACTAGATGACAACCAAAGCTGGGAACTGTTTGAAAATATAGCGGTATACTTGGAAATTTATGCAAAGAAGAGAGAATTAGGAAAGAAGATGCTTGTACATTGTTCAGGTTTACCCTTAGCCATCAGTGTGCTTGCTGGTCTTCTTAGTAGACGAGAGACAGTTGATGAGTGGGATACGGTACTTAGAAATGTTGGTGTATACATAATGAGAGGCACAAATGTCCTTGAAAGAGAAAAGACAGGTCAGGGGTGTGGTGTTTCAGGTGTCTTGGCATTGAGTTATGATGACTTACCATCTCACTTAAAACTATGCTTTTTGTATTTAGCCCAATTTCCTGAGGATCATGAGATACGGGTAAAAAGACTTGCTCAATTATGGATTGCAGAAGGGTTTATAACTTCAACGTCAGAAATGCATGTTTCAGTGGAAAGTTTGGAAGAAATGTCATATAGTTGCTTAGTTGAATTGGTGGAGAGATCTATGGTTCAAGTTGTAGAATATGGTTTAAGTGGGAAGGTGAAAACTTGCCGTCTCCATGATTTTATGCGAGACTTGTGCTTGCGAAAGGCAGAAGAGGAGAATTTTTTCCGAATTATTAATTTTTCTGCGGGACTGATATCTAAGACAGCCCTAATTGGCAAGGTTCGAAGACTTGCCCTCTATTTGGACGAAAATGTGAAATATGATTTCAGTATAGATGGAAGAGATGACCACATTAGGTCTCTACTATACTTTATCCCAAAAGGGTTTGACCAAAAGTGGAACAGAAAAATAATGCGATCAGTATTCAATGACTTCAAATTGCTTAGAGTTCTGAAGTTTGAAAATATAGAGAGAGAATTTCAGTTGCCGAAAACGATTGGGAATCTAGTCCACTTGAGGTTTCTGAGTCTGAAGCATAGTGCATATCGTGGGTTGCCATCATCTGTATCTAAGCTGGTACTTTTGCAAACTCTAGATCTGCGGTATAATTATTTATATGAAGGATTTTGTTTTGGTTGGGAGAGGGCGACCAGAATCAGAAATGTGTTTTGGAATATGGAGCAACTGAGGCATTTATATTTACCTTGGAGTCACTATATAAGTGAACAGAAACTGTCATTTGCAAGGCTGTGCAATTTGCAGACGTTGGGTGATATTTCAATTGAGAAATGTGATTTGAATGACCTTGTTCAGTTAACCAATCTGAAGAAAATATCCATAATTGTATCACAGCCTAGTCACTTGGAAAAGTTCAAGAACATGTTGATATCAAGAAGTATTACATATGAGCATCTTCGATCGCTATCTTTGAAGTTAAACCGAGATGATAATGAGGATATAGCAAGAGATATAGTATTAAGGTGTCCTCATATATACAAGCTGCGACTGGTTGGGAAAATGACGGAGTTTCCAAAAGAGCTCCTGGACTATCCAAACCTCATCAAGATAACGCTGGTTAGTACCAAATTGAGGTGTGACCAGATAGAAATACTGAAGATGTTGCCCAAGTTAAGGGTGCTTTACCTGGGTAAGAATGCTTTCGATTCAAAAACAATGGTTTTCTCTCGAGGAGGCTTTCCTCATCTGGAATTTCTTACCCTTAGTGCTTTGTTTATGTTGAACGAGTGGAGGGTGGAGAAAGAAGCCATGCCTAGTCTTCAGAGATTGCATATTGAATGGTGCCTACATTTATGGGAAGTTCCAGATGGGCTTCAGCATATTACTACCCTCAAGGAATTAACAATCAACGTGATGACTGGTAGATTCTGCAGTAGGGTTGGGGAAGGAGGAGAGGATTTCTACAAAATTAAACATGTGCCTTCTATTATAATCACAAATATTGAACCCGACTACAAGAAAGACAAGGAGCCAGAAATGGAGGAAGCAGCAGGTGCATATCCCGAATGTCCAACTTGTCAAGTGAGAAAGAGAGGAAGAGAGAAGAGAGGAGTGGAACAACCTTTTTATATTATTAACCATATACACGTAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0002230 GO:0002238 GO:0002239 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009615 GO:0009620 GO:0009626 GO:0009628 GO:0009637 GO:0009642 GO:0009646 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0012501 GO:0014070 GO:0016020 GO:0023052 GO:0030054 GO:0031347 GO:0032101 GO:0032870 GO:0033554 GO:0034050 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0043207 GO:0043900 GO:0044464 GO:0045087 GO:0046677 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071944 GO:0080134 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

989

Amino Acids

114.29

Weight (kDa)

8.38

Isoelectric Point (pI)

47.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	13 - 91	1.1e-18	Rx N-terminal domain
NB-ARC	PF00931	174 - 346	1.4e-42	NB-ARC domain
WHD_DRP	PF23559	442 - 517	6.5e-18	Disease resistance protein Winged helix domain
LRR_14	PF23598	590 - 910	2.5e-34	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G50180 AT1G53350 AT1G58390 AT1G58390 AT1G58400 AT1G58400 AT1G58400 AT1G58410 AT1G58410 AT1G58410 AT1G58410 AT1G58602 AT1G58602 AT1G58807 AT1G58807 AT1G58848 AT1G58848 AT1G59124 AT1G59124 AT1G59218 AT1G59218 AT1G59218 AT1G59620 AT1G59780 AT1G59780 AT5G35450 AT5G35450 AT5G43470 AT5G43470 AT5G43470 AT5G43470 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620
fragaria_vesca	FvH4_4g04072 FvH4_4g22931 FvH4_4g22931 FvH4_4g22940 FvH4_6g49940 FvH4_6g49940 FvH4_7g08100 FvH4_7g08870 FvH4_7g08870 FvH4_7g09280 FvH4_7g09290 FvH4_7g15190 FvH4_7g15200 FvH4_7g15240 FvH4_7g15240 FvH4_7g33440
malus_domestica	MD00G1174600.v1.1 MD01G1113700.v1.1 MD03G1071300.v1.1 MD04G1041500.v1.1 MD04G1238000.v1.1 MD07G1029000.v1.1 MD07G1092100.v1.1 MD07G1092300.v1.1 MD07G1092600.v1.1 MD12G1256300.v1.1 MD13G1128200.v1.1 MD13G1128400.v1.1 MD17G1268000.v1.1
prunus_persica	Prupe.1G041300_v2.0.a1 Prupe.1G041300_v2.0.a1 Prupe.1G042900_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043600_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G046700_v2.0.a1 Prupe.1G047700_v2.0.a1 Prupe.1G047900_v2.0.a1 Prupe.1G048000_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G049900_v2.0.a1 Prupe.1G051500_v2.0.a1 Prupe.1G051800_v2.0.a1 Prupe.1G051900_v2.0.a1 Prupe.1G052200_v2.0.a1 Prupe.1G194900_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117300_v2.0.a1 Prupe.2G117400_v2.0.a1 Prupe.2G117500_v2.0.a1 Prupe.2G117700_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G119900_v2.0.a1
pyrus_communis	pycom03g05750 pycom04g21110 pycom07g07530 pycom07g07590 pycom13g11110 pycom13g11140 pycom13g11160 pycom13g11170 pycom17g26680
rosa_chinensis	RchiOBHm_Chr1g0341231 RchiOBHm_Chr1g0344091 RchiOBHm_Chr1g0344161 RchiOBHm_Chr1g0345001 RchiOBHm_Chr1g0345351 RchiOBHm_Chr1g0345371 RchiOBHm_Chr1g0345391 RchiOBHm_Chr1g0345531 RchiOBHm_Chr1g0345551 RchiOBHm_Chr1g0345571 RchiOBHm_Chr1g0345581 RchiOBHm_Chr1g0345661 RchiOBHm_Chr1g0345691 RchiOBHm_Chr1g0345761 RchiOBHm_Chr1g0345791 RchiOBHm_Chr1g0345821 RchiOBHm_Chr1g0345911 RchiOBHm_Chr1g0345941 RchiOBHm_Chr1g0357611 RchiOBHm_Chr1g0357911 RchiOBHm_Chr1g0357921 RchiOBHm_Chr1g0357931 RchiOBHm_Chr1g0357971 RchiOBHm_Chr1g0358121 RchiOBHm_Chr1g0383491 RchiOBHm_Chr1g0383511 RchiOBHm_Chr1g0383521 RchiOBHm_Chr3g0480581 RchiOBHm_Chr4g0394341 RchiOBHm_Chr4g0394361 RchiOBHm_Chr4g0394411 RchiOBHm_Chr4g0394441 RchiOBHm_Chr4g0407681 RchiOBHm_Chr4g0429191 RchiOBHm_Chr4g0429201 RchiOBHm_Chr4g0429211 RchiOBHm_Chr4g0429221 RchiOBHm_Chr6g0265091
rosa_laevigata	RLG00000007088 RLG00000008700 RLG00000009190 RLG00000009702 RLG00000014210 RLG00000028829 RLG00000028833 RLG00000028837 RLG00000028838 RLG00000028921 RLG00000028926
rosa_multiflora	Rmu_co8366955.1_g000001 Rmu_co8394205.1_g000001 Rmu_sc0000019.1_g000001 Rmu_sc0000054.1_g000031 Rmu_sc0000054.1_g000033 Rmu_sc0000200.1_g000002 Rmu_sc0000200.1_g000007 Rmu_sc0000200.1_g000018 Rmu_sc0000200.1_g000020 Rmu_sc0000200.1_g000021 Rmu_sc0000251.1_g000012 Rmu_sc0000251.1_g000015 Rmu_sc0000251.1_g000028 Rmu_sc0000253.1_g000015 Rmu_sc0000255.1_g000045 Rmu_sc0000255.1_g000046 Rmu_sc0001292.1_g000013 Rmu_sc0001292.1_g000018 Rmu_sc0001292.1_g000028 Rmu_sc0001292.1_g000029 Rmu_sc0001349.1_g000006 Rmu_sc0001349.1_g000014 Rmu_sc0001582.1_g000006 Rmu_sc0001582.1_g000018 Rmu_sc0001582.1_g000020 Rmu_sc0001692.1_g000007 Rmu_sc0001692.1_g000024 Rmu_sc0001692.1_g000026 Rmu_sc0001692.1_g000029 Rmu_sc0001692.1_g000030 Rmu_sc0001835.1_g000006 Rmu_sc0001835.1_g000010 Rmu_sc0002071.1_g000005 Rmu_sc0002276.1_g000002 Rmu_sc0002276.1_g000009 Rmu_sc0002329.1_g000018 Rmu_sc0002329.1_g000023 Rmu_sc0002329.1_g000025 Rmu_sc0002523.1_g000005 Rmu_sc0003573.1_g000005 Rmu_sc0003573.1_g000006 Rmu_sc0004099.1_g000021 Rmu_sc0005812.1_g000009 Rmu_sc0006271.1_g000002 Rmu_sc0006287.1_g000038 Rmu_sc0006439.1_g000008 Rmu_sc0007456.1_g000004 Rmu_sc0007581.1_g000009 Rmu_sc0007849.1_g000014 Rmu_sc0008115.1_g000012 Rmu_sc0010521.1_g000004 Rmu_sc0012471.1_g000017 Rmu_sc0014762.1_g000001 Rmu_sc0015150.1_g000003 Rmu_sc0017221.1_g000001 Rmu_sc0017299.1_g000001 Rmu_sc0017299.1_g000002 Rmu_sc0021457.1_g000001 Rmu_sc0022067.1_g000001 Rmu_sc0033275.1_g000001 Rmu_ssc0000245.1_g000012 Rmu_ssc0000359.1_g000035 Rmu_ssc0000359.1_g000067 Rmu_ssc0000359.1_g000072 Rmu_ssc0000434.1_g000005 Rmu_ssc0000434.1_g000007
rosa_roxburghii	Rroxscaffold_4G00298420 Rroxscaffold_4G00298720 Rroxscaffold_4G00308990 Rroxscaffold_4G00309000 Rroxscaffold_4G00309010 Rroxscaffold_4G00309050 Rroxscaffold_4G00309070 Rroxscaffold_4G00309100 Rroxscaffold_4G00310030 Rroxscaffold_4G00310050 Rroxscaffold_4G00311880 Rroxscaffold_5G00339420 Rroxscaffold_5G00339450 Rroxscaffold_5G00344880 Rroxscaffold_5G00352270 Rroxscaffold_5G00362240 Rroxscaffold_5G00370840 Rroxscaffold_7G00202970
rosa_rugosa	Rorug01G0159100.1 Rorug01G0159200.1 Rorug01G0171700 Rorug01G0171900 Rorug01G0172000 Rorug01G0191700 Rorug01G0191800 Rorug01G0256900 Rorug01G0257000 Rorug01G0257100 Rorug03G0198000 Rorug03G0366300.1 Rorug03G0366400.1 Rorug03G0366500.1 Rorug04G0081200 Rorug04G0081200 Rorug04G0081200 Rorug04G0233700 Rorug04G0233800 Rorug04G0233800 Rorug06G0013300
rosa_samantha	Rh1CG138800 Rh1CG161300 Rh1CG173800 Rh1CG179800 Rh1CG180100 Rh1CG180500 Rh1CG180800 Rh1CG180900 Rh1CG194100 Rh1DG205100 Rh3AG236300 Rh4AG052000 Rh4AG052100 Rh4AG145900 Rh4AG289700 Rh4AG289800 Rh6AG136800 Rh6AG137300 Rh6BG133600 Rh6CG132000 Rh6CG134000 Rh6DG119300
rosa_wichuraiana	Rw0G003420 Rw1G015500 Rw1G016110 Rw1G016180 Rw1G016210 Rw1G016230 Rw1G016280 Rw1G016440 Rw1G016450 Rw1G016460 Rw1G016480 Rw1G017490 Rw1G024140 Rw1G024160 Rw3G022530 Rw4G004140 Rw4G004190 Rw4G011850 Rw6G011800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	408, 1388, 2804
AarI	CACCTGC	1 cut(s)	2855
Acc36I	ACCTGC	1 cut(s)	2855
AccB1I	GGYRCC	1 cut(s)	2655
AccI	GTMKAC	3 cut(s)	1038, 1141, 1191
AccIII	TCCGGA	1 cut(s)	602
AciI	CCGC	5 cut(s)	472, 597, 1034, 1601, 1957
AclWI	GGATC	3 cut(s)	44, 124, 1341
AcsI	RAATTY	6 cut(s)	720, 765, 1047, 1573, 1832, 2564
AcuI	CTGAAG	8 cut(s)	27, 51, 1829, 1907, 2201, 2489, 2618, 2672
AfaI	GTAC	6 cut(s)	183, 280, 1089, 1173, 1935, 2437
AfiI	CCNNNNNNNGG	4 cut(s)	1012, 1657, 2445, 2487
AflIII	ACRYGT	3 cut(s)	2235, 2788, 2959
AjnI	CCWGG	4 cut(s)	45, 263, 2397, 2499
AjuI	GAANNNNNNNTTGG	2 cut(s)	2008, 2040
AluBI	AGCT	8 cut(s)	93, 106, 260, 884, 1011, 1930, 2356, 2395
AluI	AGCT	8 cut(s)	93, 106, 260, 884, 1011, 1930, 2356, 2395
Alw21I	GWGCWC	1 cut(s)	2397
Alw26I	GTCTC	5 cut(s)	162, 1142, 1529, 1536, 1719
AlwI	GGATC	3 cut(s)	44, 124, 1341
AlwNI	CAGNNNCTG	1 cut(s)	2089
Ama87I	CYCGRG	1 cut(s)	2541
Aor13HI	TCCGGA	1 cut(s)	602
AoxI	GGCC	1 cut(s)	390
ApeKI	GCWGC	3 cut(s)	212, 2356, 2861
ApoI	RAATTY	6 cut(s)	720, 765, 1047, 1573, 1832, 2564
AseI	ATTAAT	1 cut(s)	1590
Asp700I	GAANNNNTTC	2 cut(s)	1577, 2513
AspS9I	GGNCC	3 cut(s)	348, 390, 838
AsuC2I	CCSGG	1 cut(s)	134
AsuHPI	GGTGA	5 cut(s)	443, 560, 658, 1522, 2138
AsuII	TTCGAA	2 cut(s)	714, 1639
AvaI	CYCGRG	1 cut(s)	2541
AvaII	GGWCC	2 cut(s)	348, 838
AxyI	CCTNAGG	1 cut(s)	1329
BanI	GGYRCC	1 cut(s)	2655
BanII	GRGCYC	1 cut(s)	2397
BarI	GAAGNNNNNNTAC	4 cut(s)	165, 197, 430, 462
BbsI	GAAGAC	4 cut(s)	703, 1124, 1648, 2624
Bbv12I	GWGCWC	1 cut(s)	2397
BbvI	GCAGC	3 cut(s)	199, 2343, 2873
BccI	CCATC	6 cut(s)	586, 1121, 1294, 1685, 1921, 2675
BceAI	ACGGC	1 cut(s)	1506
BcgI	CGANNNNNNTGC	2 cut(s)	1530, 1564
BciT130I	CCWGG	4 cut(s)	47, 265, 2399, 2501
BciVI	GTATCC	2 cut(s)	821, 1159
BclI	TGATCA	1 cut(s)	970
BcnI	CCSGG	1 cut(s)	134
BcoDI	GTCTC	5 cut(s)	162, 1142, 1529, 1536, 1719
BfaI	CTAG	6 cut(s)	464, 995, 1862, 1949, 2211, 2628
BfmI	CTRYAG	2 cut(s)	805, 2743
BfuAI	ACCTGC	1 cut(s)	2855
BfuI	GTATCC	2 cut(s)	821, 1159
BglII	AGATCT	2 cut(s)	1469, 1951
BisI	GCNGC	5 cut(s)	213, 473, 598, 2357, 2862
BlsI	GCNGC	5 cut(s)	214, 474, 599, 2358, 2863
Bme1390I	CCNGG	5 cut(s)	47, 134, 265, 2399, 2501
Bme18I	GGWCC	2 cut(s)	348, 838
BmeT110I	CYCGRG	1 cut(s)	2541
BmgT120I	GGNCC	3 cut(s)	348, 390, 838
BmiI	GGNNCC	4 cut(s)	349, 601, 2657, 2844
BmrFI	CCNGG	5 cut(s)	47, 134, 265, 2399, 2501
BmsI	GCATC	7 cut(s)	139, 145, 199, 321, 968, 1071, 2275
BpiI	GAAGAC	4 cut(s)	703, 1124, 1648, 2624
Bpu10I	CCTNAGC	1 cut(s)	1108
Bpu14I	TTCGAA	2 cut(s)	714, 1639
BpuEI	CTTGAG	4 cut(s)	100, 843, 1891, 2690
BpuMI	CCSGG	1 cut(s)	134
BsaAI	YACGTR	1 cut(s)	2962
BsaBI	GATNNNNATC	1 cut(s)	2278
BsaI	GGTCTC	1 cut(s)	1719
BsaJI	CCNNGG	5 cut(s)	45, 46, 133, 2060, 2500
BsaWI	WCCGGW	1 cut(s)	602
BsaXI	ACNNNNNCTCC	4 cut(s)	262, 267, 292, 297
Bsc4I	CCNNNNNNNGG	4 cut(s)	1012, 1657, 2445, 2487
Bse118I	RCCGGY	1 cut(s)	468
Bse1I	ACTGG	4 cut(s)	393, 540, 2367, 2737
Bse21I	CCTNAGG	1 cut(s)	1329
Bse3DI	GCAATG	1 cut(s)	801
Bse8I	GATNNNNATC	1 cut(s)	2278
BseAI	TCCGGA	1 cut(s)	602
BseBI	CCWGG	4 cut(s)	47, 265, 2399, 2501
BseDI	CCNNGG	5 cut(s)	45, 46, 133, 2060, 2500
BseGI	GGATG	3 cut(s)	597, 790, 959
BseJI	GATNNNNATC	1 cut(s)	2278
BseLI	CCNNNNNNNGG	4 cut(s)	1012, 1657, 2445, 2487
BseMI	GCAATG	1 cut(s)	801
BseMII	CTCAG	6 cut(s)	157, 377, 392, 1320, 1871, 2033
BseNI	ACTGG	4 cut(s)	393, 540, 2367, 2737
BseRI	GAGGAG	7 cut(s)	283, 288, 557, 1583, 2559, 2778, 2937
BseXI	GCAGC	3 cut(s)	199, 2343, 2873
BseYI	CCCAGC	1 cut(s)	1011
Bsh1285I	CGRYCG	1 cut(s)	2276
BshFI	GGCC	1 cut(s)	392
BshNI	GGYRCC	1 cut(s)	2655
BsiEI	CGRYCG	1 cut(s)	2276
BsiHKAI	GWGCWC	1 cut(s)	2397
BsiHKCI	CYCGRG	1 cut(s)	2541
BsiSI	CCGG	4 cut(s)	133, 469, 603, 916
BslFI	GGGAC	1 cut(s)	1617
BslI	CCNNNNNNNGG	4 cut(s)	1012, 1657, 2445, 2487
BsmAI	GTCTC	5 cut(s)	162, 1142, 1529, 1536, 1719
BsmBI	CGTCTC	2 cut(s)	162, 1529
BsmFI	GGGAC	1 cut(s)	1617
BsmI	GAATGC	2 cut(s)	871, 2515
BsnI	GGCC	1 cut(s)	392
Bso31I	GGTCTC	1 cut(s)	1719
BsoBI	CYCGRG	1 cut(s)	2541
Bsp119I	TTCGAA	2 cut(s)	714, 1639
Bsp1286I	GDGCHC	1 cut(s)	2397
Bsp13I	TCCGGA	1 cut(s)	602
Bsp1407I	TGTACA	1 cut(s)	1087
Bsp143I	GATC	8 cut(s)	36, 129, 970, 1333, 1469, 1772, 1951, 2273
BspACI	CCGC	5 cut(s)	472, 597, 1034, 1601, 1957
BspANI	GGCC	1 cut(s)	392
BspCNI	CTCAG	6 cut(s)	156, 378, 393, 1321, 1872, 2034
BspEI	TCCGGA	1 cut(s)	602
BspHI	TCATGA	2 cut(s)	487, 1336
BspLI	GGNNCC	4 cut(s)	349, 601, 2657, 2844
BspMAI	CTGCAG	1 cut(s)	2747
BspMI	ACCTGC	1 cut(s)	2855
BspPI	GGATC	3 cut(s)	44, 124, 1341
BspT104I	TTCGAA	2 cut(s)	714, 1639
BspT107I	GGYRCC	1 cut(s)	2655
BspTNI	GGTCTC	1 cut(s)	1719
BsrDI	GCAATG	1 cut(s)	801
BsrFI	RCCGGY	1 cut(s)	468
BsrGI	TGTACA	1 cut(s)	1087
BsrI	ACTGG	4 cut(s)	393, 540, 2367, 2737
BssAI	RCCGGY	1 cut(s)	468
BssECI	CCNNGG	5 cut(s)	45, 46, 133, 2060, 2500
BssMI	GATC	8 cut(s)	36, 129, 970, 1333, 1469, 1772, 1951, 2273
BssNAI	GTATAC	2 cut(s)	1039, 1192
BssT1I	CCWWGG	1 cut(s)	2060
Bst1107I	GTATAC	2 cut(s)	1039, 1192
Bst2UI	CCWGG	4 cut(s)	47, 265, 2399, 2501
Bst4CI	ACNGT	6 cut(s)	22, 283, 1020, 1153, 1171, 2091
Bst6I	CTCTTC	5 cut(s)	1055, 1560, 1690, 2905, 2912
BstAPI	GCANNNNNTGC	1 cut(s)	2867
BstAUI	TGTACA	1 cut(s)	1087
BstBAI	YACGTR	1 cut(s)	2962
BstBI	TTCGAA	2 cut(s)	714, 1639
BstC8I	GCNNGC	6 cut(s)	69, 108, 310, 957, 1125, 1553
BstF5I	GGATG	3 cut(s)	597, 790, 959
BstKTI	GATC	8 cut(s)	39, 132, 973, 1336, 1472, 1775, 1954, 2276
BstMAI	GTCTC	5 cut(s)	162, 1142, 1529, 1536, 1719
BstMBI	GATC	8 cut(s)	36, 129, 970, 1333, 1469, 1772, 1951, 2273
BstMCI	CGRYCG	1 cut(s)	2276
BstMWI	GCNNNNNNNGC	3 cut(s)	956, 2044, 2867
BstNI	CCWGG	4 cut(s)	47, 265, 2399, 2501
BstNSI	RCATGY	3 cut(s)	1412, 2239, 2792
BstSCI	CCNGG	5 cut(s)	45, 132, 263, 2397, 2499
BstSFI	CTRYAG	2 cut(s)	805, 2743
BstV1I	GCAGC	3 cut(s)	199, 2343, 2873
BstV2I	GAAGAC	4 cut(s)	703, 1124, 1648, 2624
BstX2I	RGATCY	2 cut(s)	1469, 1951
BstYI	RGATCY	2 cut(s)	1469, 1951
BstZ17I	GTATAC	2 cut(s)	1039, 1192
Bsu36I	CCTNAGG	1 cut(s)	1329
BsuI	GTATCC	2 cut(s)	821, 1159
BsuRI	GGCC	1 cut(s)	392
BtsCI	GGATG	3 cut(s)	597, 790, 959
BtsIMutI	CAGTG	2 cut(s)	1123, 1422
BveI	ACCTGC	1 cut(s)	2855
Cac8I	GCNNGC	6 cut(s)	69, 108, 310, 957, 1125, 1553
CaiI	CAGNNNCTG	1 cut(s)	2089
CciI	TCATGA	2 cut(s)	487, 1336
Cfr10I	RCCGGY	1 cut(s)	468
Cfr13I	GGNCC	3 cut(s)	348, 390, 838
CseI	GACGC	1 cut(s)	554
Csp6I	GTAC	6 cut(s)	182, 279, 1088, 1172, 1934, 2436
CviAII	CATG	7 cut(s)	488, 1337, 1409, 1529, 2236, 2623, 2789
CviQI	GTAC	6 cut(s)	182, 279, 1088, 1172, 1934, 2436
DpnI	GATC	8 cut(s)	38, 131, 972, 1335, 1471, 1774, 1953, 2275
DpnII	GATC	8 cut(s)	36, 129, 970, 1333, 1469, 1772, 1951, 2273
Eam1104I	CTCTTC	5 cut(s)	1055, 1560, 1690, 2905, 2912
EarI	CTCTTC	5 cut(s)	1055, 1560, 1690, 2905, 2912
Ecl136II	GAGCTC	1 cut(s)	2395
Eco130I	CCWWGG	1 cut(s)	2060
Eco24I	GRGCYC	1 cut(s)	2397
Eco31I	GGTCTC	1 cut(s)	1719
Eco32I	GATATC	3 cut(s)	232, 1611, 2244
Eco47I	GGWCC	2 cut(s)	348, 838
Eco53kI	GAGCTC	1 cut(s)	2395
Eco57I	CTGAAG	8 cut(s)	27, 51, 1829, 1907, 2201, 2489, 2618, 2672
Eco81I	CCTNAGG	1 cut(s)	1329
Eco88I	CYCGRG	1 cut(s)	2541
EcoICRI	GAGCTC	1 cut(s)	2395
EcoRII	CCWGG	4 cut(s)	45, 263, 2397, 2499
EcoRV	GATATC	3 cut(s)	232, 1611, 2244
EcoT14I	CCWWGG	1 cut(s)	2060
EcoT22I	ATGCAT	1 cut(s)	1410
EcoT38I	GRGCYC	1 cut(s)	2397
ErhI	CCWWGG	1 cut(s)	2060
Esp3I	CGTCTC	2 cut(s)	162, 1529
FaeI	CATG	7 cut(s)	491, 1340, 1412, 1532, 2239, 2626, 2792
FalI	AAGNNNNNCTT	4 cut(s)	90, 122, 105, 137
FaqI	GGGAC	1 cut(s)	1617
FatI	CATG	7 cut(s)	487, 1336, 1408, 1528, 2235, 2622, 2788
FauI	CCCGC	1 cut(s)	1594
FauNDI	CATATG	2 cut(s)	851, 2260
FbaI	TGATCA	1 cut(s)	970
FblI	GTMKAC	3 cut(s)	1038, 1141, 1191
Fnu4HI	GCNGC	5 cut(s)	213, 473, 598, 2357, 2862
FokI	GGATG	3 cut(s)	604, 797, 946
FriOI	GRGCYC	1 cut(s)	2397
Fsp4HI	GCNGC	5 cut(s)	213, 473, 598, 2357, 2862
FspBI	CTAG	6 cut(s)	464, 995, 1862, 1949, 2211, 2628
GluI	GCNGC	5 cut(s)	213, 473, 598, 2357, 2862
GsaI	CCCAGC	1 cut(s)	1015
HaeIII	GGCC	1 cut(s)	392
HapII	CCGG	4 cut(s)	133, 469, 603, 916
HgaI	GACGC	1 cut(s)	554
Hin1II	CATG	7 cut(s)	491, 1340, 1412, 1532, 2239, 2626, 2792
HincII	GTYRAC	1 cut(s)	2172
HindII	GTYRAC	1 cut(s)	2172
HpaI	GTTAAC	1 cut(s)	2172
HpaII	CCGG	4 cut(s)	133, 469, 603, 916
HphI	GGTGA	5 cut(s)	443, 560, 658, 1522, 2138
Hpy166II	GTNNAC	7 cut(s)	1039, 1103, 1142, 1192, 1867, 2081, 2172
Hpy8I	GTNNAC	7 cut(s)	1039, 1103, 1142, 1192, 1867, 2081, 2172
HpyCH4III	ACNGT	6 cut(s)	22, 283, 1020, 1153, 1171, 2091
HpyCH4IV	ACGT	5 cut(s)	652, 1397, 2120, 2724, 2961
HpyF10VI	GCNNNNNNNGC	3 cut(s)	956, 2044, 2867
HpySE526I	ACGT	5 cut(s)	652, 1397, 2120, 2724, 2961
Hsp92II	CATG	7 cut(s)	491, 1340, 1412, 1532, 2239, 2626, 2792
Kpn2I	TCCGGA	1 cut(s)	602
Ksp22I	TGATCA	1 cut(s)	970
KspAI	GTTAAC	1 cut(s)	2172
Kzo9I	GATC	8 cut(s)	36, 129, 970, 1333, 1469, 1772, 1951, 2273
LmnI	GCTCC	4 cut(s)	605, 2035, 2400, 2842
Lsp1109I	GCAGC	3 cut(s)	199, 2343, 2873
LweI	GCATC	7 cut(s)	139, 145, 199, 321, 968, 1071, 2275
MaeI	CTAG	6 cut(s)	464, 995, 1862, 1949, 2211, 2628
MaeII	ACGT	5 cut(s)	652, 1397, 2120, 2724, 2961
MaeIII	GTNAC	5 cut(s)	16, 566, 2066, 2213, 2450
MalI	GATC	8 cut(s)	38, 131, 972, 1335, 1471, 1774, 1953, 2275
MboI	GATC	8 cut(s)	36, 129, 970, 1333, 1469, 1772, 1951, 2273
MfeI	CAATTG	1 cut(s)	2136
MflI	RGATCY	2 cut(s)	1469, 1951
MhlI	GDGCHC	1 cut(s)	2397
MlyI	GAGTC	4 cut(s)	96, 850, 1891, 2074
MmeI	TCCRAC	1 cut(s)	2909
Mph1103I	ATGCAT	1 cut(s)	1410
MroI	TCCGGA	1 cut(s)	602
MroXI	GAANNNNTTC	2 cut(s)	1577, 2513
MslI	CAYNNNNRTG	1 cut(s)	1118
MspI	CCGG	4 cut(s)	133, 469, 603, 916
MspR9I	CCNGG	5 cut(s)	47, 134, 265, 2399, 2501
MunI	CAATTG	1 cut(s)	2136
Mva1269I	GAATGC	2 cut(s)	871, 2515
MvaI	CCWGG	4 cut(s)	47, 265, 2399, 2501
MwoI	GCNNNNNNNGC	3 cut(s)	956, 2044, 2867
NciI	CCSGG	1 cut(s)	134
NdeI	CATATG	2 cut(s)	851, 2260
NdeII	GATC	8 cut(s)	36, 129, 970, 1333, 1469, 1772, 1951, 2273
NlaIII	CATG	7 cut(s)	491, 1340, 1412, 1532, 2239, 2626, 2792
NlaIV	GGNNCC	4 cut(s)	349, 601, 2657, 2844
NmuCI	GTSAC	4 cut(s)	566, 2066, 2213, 2450
NsiI	ATGCAT	1 cut(s)	1410
NspI	RCATGY	3 cut(s)	1412, 2239, 2792
NspV	TTCGAA	2 cut(s)	714, 1639
PacI	TTAATTAA	1 cut(s)	729
PaeR7I	CTCGAG	1 cut(s)	2541
PagI	TCATGA	2 cut(s)	487, 1336
PaqCI	CACCTGC	1 cut(s)	2855
PasI	CCCWGGG	1 cut(s)	46
PciI	ACATGT	2 cut(s)	2235, 2788
PctI	GAATGC	2 cut(s)	871, 2515
PdmI	GAANNNNTTC	2 cut(s)	1577, 2513
PfeI	GAWTC	6 cut(s)	239, 888, 1858, 2010, 2519, 2739
PfoI	TCCNGGA	2 cut(s)	263, 2397
PkrI	GCNGC	5 cut(s)	214, 474, 599, 2358, 2863
Ple19I	CGATCG	1 cut(s)	2276
PleI	GAGTC	4 cut(s)	95, 850, 1890, 2073
PpsI	GAGTC	4 cut(s)	95, 850, 1890, 2073
Ppu21I	YACGTR	1 cut(s)	2962
PscI	ACATGT	2 cut(s)	2235, 2788
PshBI	ATTAAT	1 cut(s)	1590
PsiI	TTATAA	3 cut(s)	408, 1388, 2804
Psp124BI	GAGCTC	1 cut(s)	2397
Psp6I	CCWGG	4 cut(s)	45, 263, 2397, 2499
PspFI	CCCAGC	1 cut(s)	1011
PspGI	CCWGG	4 cut(s)	45, 263, 2397, 2499
PspN4I	GGNNCC	4 cut(s)	349, 601, 2657, 2844
PspPI	GGNCC	3 cut(s)	348, 390, 838
PstI	CTGCAG	1 cut(s)	2747
PstNI	CAGNNNCTG	1 cut(s)	2089
PsuI	RGATCY	2 cut(s)	1469, 1951
PvuI	CGATCG	1 cut(s)	2276
RsaI	GTAC	6 cut(s)	183, 280, 1089, 1173, 1935, 2437
RsaNI	GTAC	6 cut(s)	182, 279, 1088, 1172, 1934, 2436
RseI	CAYNNNNRTG	1 cut(s)	1118
SacI	GAGCTC	1 cut(s)	2397
SatI	GCNGC	5 cut(s)	213, 473, 598, 2357, 2862
Sau3AI	GATC	8 cut(s)	36, 129, 970, 1333, 1469, 1772, 1951, 2273
Sau96I	GGNCC	3 cut(s)	348, 390, 838
SchI	GAGTC	4 cut(s)	96, 850, 1891, 2074
ScrFI	CCNGG	5 cut(s)	47, 134, 265, 2399, 2501
SduI	GDGCHC	1 cut(s)	2397
SfaNI	GCATC	7 cut(s)	139, 145, 199, 321, 968, 1071, 2275
SfcI	CTRYAG	2 cut(s)	805, 2743
Sfr274I	CTCGAG	1 cut(s)	2541
SfuI	TTCGAA	2 cut(s)	714, 1639
SinI	GGWCC	2 cut(s)	348, 838
SlaI	CTCGAG	1 cut(s)	2541
SmiMI	CAYNNNNRTG	1 cut(s)	1118
SmlI	CTYRAG	5 cut(s)	79, 858, 1870, 2541, 2705
SmoI	CTYRAG	5 cut(s)	79, 858, 1870, 2541, 2705
SsiI	CCGC	5 cut(s)	472, 597, 1034, 1601, 1957
SspI	AATATT	1 cut(s)	2815
SspMI	CTAG	6 cut(s)	464, 995, 1862, 1949, 2211, 2628
SstI	GAGCTC	1 cut(s)	2397
StyD4I	CCNGG	5 cut(s)	45, 132, 263, 2397, 2499
StyI	CCWWGG	1 cut(s)	2060
TaaI	ACNGT	6 cut(s)	22, 283, 1020, 1153, 1171, 2091
TaiI	ACGT	5 cut(s)	655, 1400, 2123, 2727, 2964
TaqI	TCGA	7 cut(s)	714, 875, 988, 1639, 2272, 2517, 2542
TatI	WGTACW	1 cut(s)	1087
TauI	GCSGC	2 cut(s)	475, 600
TfiI	GAWTC	6 cut(s)	239, 888, 1858, 2010, 2519, 2739
TscAI	CASTG	2 cut(s)	1123, 1422
TseFI	GTSAC	4 cut(s)	566, 2066, 2213, 2450
TseI	GCWGC	3 cut(s)	212, 2356, 2861
Tsp45I	GTSAC	4 cut(s)	566, 2066, 2213, 2450
TspDTI	ATGAA	6 cut(s)	46, 336, 504, 791, 801, 1989
TspGWI	ACGGA	1 cut(s)	2393
TspRI	CASTG	2 cut(s)	1123, 1422
VpaK11BI	GGWCC	2 cut(s)	348, 838
VspI	ATTAAT	1 cut(s)	1590
XapI	RAATTY	6 cut(s)	720, 765, 1047, 1573, 1832, 2564
XbaI	TCTAGA	1 cut(s)	1948
XceI	RCATGY	3 cut(s)	1412, 2239, 2792
XhoI	CTCGAG	1 cut(s)	2541
XmiI	GTMKAC	3 cut(s)	1038, 1141, 1191
XmnI	GAANNNNTTC	2 cut(s)	1577, 2513
XspI	CTAG	6 cut(s)	464, 995, 1862, 1949, 2211, 2628
Zsp2I	ATGCAT	1 cut(s)	1410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.