Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000069

Physical Location & Seq

Genomic Coordinates Reverse (-)

36481174 .. 36484949

Gene Structure 3776 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57063

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3084 bp

ATGGTGGCCTTGGTTCGTATCACACAAGGGATAATATTAGTAATCAAGTTAGTTAAAGAATATGCCAAGGGTAAACACCTGGTTTACCAGACTTCATATAGAAACGGAAGATATTTTACATATCCAGTGCTCACAAAATTTCATAATCTAAACTCTAAACACAAACCAAAACACTGCTGGTTCCGTTGCTCTCTTTCGGCAAAGATCAGAAATATGGCTGAAGGTGTTGTTACAGTTGTGGCTGAAGGGATCAAGCCCCTTGGAGAGTTCATCATTCAGCAAGCGAAATTCTTGAGTGGAGTCAGCAATCAAATTGAGCTTGCGCAGAACGAGCTACACTTGATCCGGGGATTTCTAAAAGACGCAGATATGAAGCAACAAGATGAAGAACTAGTACGCAATTGTGTTGAACTTATCAGAGATGCTGCTTATGACTTGGAGGATGTCATTGAATCTTTTTACTTGAAAGTGGCTTCCAGGAGGAGAGGAGGTACTGTGAAGAGGATTGTTCTCAAAAGGTTTGCCTGCATCTTTAATGAAGGACTTAATCGATACAAGATTGGGTCCGAAATTGAGCATATTATGGCCAAACTTTCTCATCTGAGGTCGAATTTGCAGAGTTATAACATAAGACAAATAAGTGGGGGTGAAAGTGTGGCTTCAGCTTTTAAGAGGCAACAAGATAGGAGGCGAACTTACGCTCATGAAGTTGAAAGTCATATTGTTGTTGGGTTGGAGGAAATTACGGGAACACTGGTGAAAAAGTTGGTGAGAGAAGGAAAGCGTCATCTAGTTGTTTCTATTTGGGGGATGGGCGGCTCCGGAAAAACCACTCTTGCAAAACAGGTTTTTCGTCAAAATGAAATTAAGCGTCATTTTGATTGTTTTGCTTGGGTCTGTATATCTCAACAATGGGAAGGAAAGGTTGTATTGGAAGAGATTTTAATCAAACTCACTTCCCCATCAACAGAGAAAAGGAAAGAAATTTCCAAAATGAAAATGGATGAAATAGCAGAGGAGGTCTGTAGTATCCAACGAGAAAAGAGATGTTTGGTGGTCCTTGATGACATATGGACTCAAGAGGCTTGGAATTCGATAAAAGCTGGATTCCCAATCAATGAGAAAACAGAGAGCCGGATATTACTCACTACTCGCAAGAAAGAAGTCGCCTTGCTTGCATCCAAAAATGATCATCTCCACCAACCTCAGCAACTAGATGACAACCAGTGCTGGGAACTGTTTGAAAAGATAGCCATCTGTGGAAGCGACAAAACAGACTTGGAAATTGATGCAGAGAAGAGAAAATTAGGAGAGGAGATGCTTAAACATTGTTCAGGTCTACCATTAGCCATCACTGTGCTCGCTGGTCTTCTTAGTAGACGAGAGACGGTTGATGAATGGAAGACAGTACTTGGAAATGTTAATGTATGCATAATGAGAGGCACAAATGTCCCTGAAAGAGAAAAGACAAGTCAGGAGTGTGGTGTTTCAGGTGTCTTGGCATTGAGTTATGATGACTTACCATCTCACTTGAAACTCTGCTTTCTGTATTTAGCCCAATATCCTGAGGATCATGAGATACAGGTAACAAGATTGACTCAATTATGGATTGCGGAAGGGTTTATACCTTCAACATCAGAAATACATGGTTCAATTGAATTAATGGAAGATGTATCATATGGTTGCCTAACTGAACTGGTGCAAAGATCTATGGTTCAAGTTGGAATATATGGTTTTAGTGGGAAGGTGAAAAGTTGCCGTCTCCATGATCTTATGCGGGACTTGTGCTTGCAAAAGGCAAAAGAGGAGAACTTTCTCGGTATTGTTAACTTTTCTGTTGGTCCGGTATCTAATGCAACAGTGATTGGTAAGGTTCGAAGACTTGCCCTCTATTTGGATGAAAATGTTAAATATGAGTTCAGTAGTGAGAATGGAAGAGATGGCCACATTAGGTCTCTATTATACTTTGCCCCAAAAGAGTTCAAGCAAAAGTGGAACAAAAGAATAATACGATCAGTATTCAATGACTTCAAATTGCTTAGAGTCTTGAAGATTGAAAATATATCTAGAGGTTTTGAGTTACCAAAGACGATTGGGAATCTAGTCCACTTGAGGTTTCTGAGTCTGAAGGGTAGTGCATATCGTGCCTTGCCATCATCTGTATCTAATCTGGTACTTTTGCAAACTCTAGATCTGCGTGGTGGTTTTATAAGCAGGGATACCAAAATCAGAAATGTGTTTTGGAATATGAAGCAACTGAGGCATTTGTATTTACCTCATTTTATATATGGGTACAGTGTCAGTGGAAAACTGTCATTTGCAAGGTTGTGCAATTTGCAGACGTTGGCCAATTTTTCAATTAGGAAGTGTGATTTGAATGATCTTGTTCAATTAAGCAATCTGAAGAAACTAAGCATATTGCCAACAGGGTCTGGTAAGTTGGAAAAGCTGAAGGACATGTTGATATCAAGGAATAGAACATATAAACATCTTCGGTCTCTATCTCTGGAGGTAATCGGATCTGGTGATGGGGATATTATACCAAGTGATATAGTATTAAGGTGTCCTCATTTATACAAGCTGCGACTTTGGGGGGAAATGACAGCGTTACCGAAAGAGCTCCCAAACCTCGCCAAGTTAACGCTGATAAAAACAAAACTGAAGGGTGATCAGATTGAAATACTGGAAAAGCTGCCCAACTTAAGGGTGCTTTACCTCGGTTGGTGTTCTTTCGAATCAGAAACAATGGTTTTCTCCCAAGGAGGCTTTCCTCATCTGGAATTTCTTACCCTTCATTACTTGCGTGATTTGAAGGAGTGGAGGGTGGAGAAAGAAGCCATGCCTTGTCTTCAGAGATTGCACATTGTAGAGTGCTACGGCTTGCAGGCGCTTGCAGATGGGCTTCAGGAGATTACTACCCTCAAGGAATTAACAATTGACGAGATGCCCAGTAGATTCTGCAGTAGGGTTGGGGAAGGAGGAGAGGATTTCTACAAAATCAAACATGTGCCTTCTCGTATAATCACAAATATTCAACGCGACTACGAAATGGAGGAAGCAGCAGTGACCCTGATCAGGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0002230 GO:0002238 GO:0002239 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009615 GO:0009620 GO:0009626 GO:0009628 GO:0009637 GO:0009642 GO:0009646 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0012501 GO:0014070 GO:0016020 GO:0023052 GO:0030054 GO:0031347 GO:0032101 GO:0032870 GO:0033554 GO:0034050 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0043207 GO:0043900 GO:0044464 GO:0045087 GO:0046677 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071944 GO:0080134 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

1027

Amino Acids

117.66

Weight (kDa)

9.11

Isoelectric Point (pI)

45.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	84 - 162	2.9e-19	Rx N-terminal domain
NB-ARC	PF00931	249 - 419	3.7e-42	NB-ARC domain
WHD_DRP	PF23559	521 - 596	6.8e-18	Disease resistance protein Winged helix domain
LRR_14	PF23598	672 - 979	6.5e-35	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G50180 AT1G53350 AT1G58390 AT1G58390 AT1G58400 AT1G58400 AT1G58400 AT1G58410 AT1G58410 AT1G58410 AT1G58410 AT1G58602 AT1G58602 AT1G58807 AT1G58807 AT1G58848 AT1G58848 AT1G59124 AT1G59124 AT1G59218 AT1G59218 AT1G59218 AT1G59620 AT1G59780 AT1G59780 AT5G35450 AT5G35450 AT5G43470 AT5G43470 AT5G43470 AT5G43470 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620
fragaria_vesca	FvH4_4g04072 FvH4_4g22931 FvH4_4g22931 FvH4_4g22940 FvH4_6g49940 FvH4_6g49940 FvH4_7g08100 FvH4_7g08870 FvH4_7g08870 FvH4_7g09280 FvH4_7g09290 FvH4_7g15190 FvH4_7g15200 FvH4_7g15240 FvH4_7g15240 FvH4_7g33440
malus_domestica	MD00G1174600.v1.1 MD01G1113700.v1.1 MD03G1071300.v1.1 MD04G1041500.v1.1 MD04G1238000.v1.1 MD07G1029000.v1.1 MD07G1092100.v1.1 MD07G1092300.v1.1 MD07G1092600.v1.1 MD12G1256300.v1.1 MD13G1128200.v1.1 MD13G1128400.v1.1 MD17G1268000.v1.1
prunus_persica	Prupe.1G041300_v2.0.a1 Prupe.1G041300_v2.0.a1 Prupe.1G042900_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043600_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G046700_v2.0.a1 Prupe.1G047700_v2.0.a1 Prupe.1G047900_v2.0.a1 Prupe.1G048000_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G049900_v2.0.a1 Prupe.1G051500_v2.0.a1 Prupe.1G051800_v2.0.a1 Prupe.1G051900_v2.0.a1 Prupe.1G052200_v2.0.a1 Prupe.1G194900_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117300_v2.0.a1 Prupe.2G117400_v2.0.a1 Prupe.2G117500_v2.0.a1 Prupe.2G117700_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G119900_v2.0.a1
pyrus_communis	pycom03g05750 pycom04g21110 pycom07g07530 pycom07g07590 pycom13g11110 pycom13g11140 pycom13g11160 pycom13g11170 pycom17g26680
rosa_chinensis	RchiOBHm_Chr1g0341231 RchiOBHm_Chr1g0344091 RchiOBHm_Chr1g0344161 RchiOBHm_Chr1g0345001 RchiOBHm_Chr1g0345351 RchiOBHm_Chr1g0345371 RchiOBHm_Chr1g0345391 RchiOBHm_Chr1g0345531 RchiOBHm_Chr1g0345551 RchiOBHm_Chr1g0345571 RchiOBHm_Chr1g0345581 RchiOBHm_Chr1g0345661 RchiOBHm_Chr1g0345691 RchiOBHm_Chr1g0345761 RchiOBHm_Chr1g0345791 RchiOBHm_Chr1g0345821 RchiOBHm_Chr1g0345911 RchiOBHm_Chr1g0345941 RchiOBHm_Chr1g0357611 RchiOBHm_Chr1g0357911 RchiOBHm_Chr1g0357921 RchiOBHm_Chr1g0357931 RchiOBHm_Chr1g0357971 RchiOBHm_Chr1g0358121 RchiOBHm_Chr1g0383491 RchiOBHm_Chr1g0383511 RchiOBHm_Chr1g0383521 RchiOBHm_Chr3g0480581 RchiOBHm_Chr4g0394341 RchiOBHm_Chr4g0394361 RchiOBHm_Chr4g0394411 RchiOBHm_Chr4g0394441 RchiOBHm_Chr4g0407681 RchiOBHm_Chr4g0429191 RchiOBHm_Chr4g0429201 RchiOBHm_Chr4g0429211 RchiOBHm_Chr4g0429221 RchiOBHm_Chr6g0265091
rosa_laevigata	RLG00000007088 RLG00000008700 RLG00000009190 RLG00000009702 RLG00000014210 RLG00000028829 RLG00000028833 RLG00000028837 RLG00000028838 RLG00000028921 RLG00000028926
rosa_multiflora	Rmu_co8366955.1_g000001 Rmu_co8394205.1_g000001 Rmu_sc0000019.1_g000001 Rmu_sc0000054.1_g000031 Rmu_sc0000054.1_g000033 Rmu_sc0000200.1_g000002 Rmu_sc0000200.1_g000007 Rmu_sc0000200.1_g000018 Rmu_sc0000200.1_g000020 Rmu_sc0000200.1_g000021 Rmu_sc0000251.1_g000012 Rmu_sc0000251.1_g000015 Rmu_sc0000251.1_g000028 Rmu_sc0000253.1_g000015 Rmu_sc0000255.1_g000045 Rmu_sc0000255.1_g000046 Rmu_sc0001292.1_g000013 Rmu_sc0001292.1_g000018 Rmu_sc0001292.1_g000028 Rmu_sc0001292.1_g000029 Rmu_sc0001349.1_g000006 Rmu_sc0001349.1_g000014 Rmu_sc0001582.1_g000006 Rmu_sc0001582.1_g000018 Rmu_sc0001582.1_g000020 Rmu_sc0001692.1_g000007 Rmu_sc0001692.1_g000024 Rmu_sc0001692.1_g000026 Rmu_sc0001692.1_g000029 Rmu_sc0001692.1_g000030 Rmu_sc0001835.1_g000006 Rmu_sc0001835.1_g000010 Rmu_sc0002071.1_g000005 Rmu_sc0002276.1_g000002 Rmu_sc0002276.1_g000009 Rmu_sc0002329.1_g000018 Rmu_sc0002329.1_g000023 Rmu_sc0002329.1_g000025 Rmu_sc0002523.1_g000005 Rmu_sc0003573.1_g000005 Rmu_sc0003573.1_g000006 Rmu_sc0004099.1_g000021 Rmu_sc0005812.1_g000009 Rmu_sc0006271.1_g000002 Rmu_sc0006287.1_g000038 Rmu_sc0006439.1_g000008 Rmu_sc0007456.1_g000004 Rmu_sc0007581.1_g000009 Rmu_sc0007849.1_g000014 Rmu_sc0008115.1_g000012 Rmu_sc0010521.1_g000004 Rmu_sc0012471.1_g000017 Rmu_sc0014762.1_g000001 Rmu_sc0015150.1_g000003 Rmu_sc0017221.1_g000001 Rmu_sc0017299.1_g000001 Rmu_sc0017299.1_g000002 Rmu_sc0021457.1_g000001 Rmu_sc0022067.1_g000001 Rmu_sc0033275.1_g000001 Rmu_ssc0000245.1_g000012 Rmu_ssc0000359.1_g000035 Rmu_ssc0000359.1_g000067 Rmu_ssc0000359.1_g000072 Rmu_ssc0000434.1_g000005 Rmu_ssc0000434.1_g000007
rosa_roxburghii	Rroxscaffold_4G00298420 Rroxscaffold_4G00298720 Rroxscaffold_4G00308990 Rroxscaffold_4G00309000 Rroxscaffold_4G00309010 Rroxscaffold_4G00309050 Rroxscaffold_4G00309070 Rroxscaffold_4G00309100 Rroxscaffold_4G00310030 Rroxscaffold_4G00310050 Rroxscaffold_4G00311880 Rroxscaffold_5G00339420 Rroxscaffold_5G00339450 Rroxscaffold_5G00344880 Rroxscaffold_5G00352270 Rroxscaffold_5G00362240 Rroxscaffold_5G00370840 Rroxscaffold_7G00202970
rosa_rugosa	Rorug01G0159100.1 Rorug01G0159200.1 Rorug01G0171700 Rorug01G0171900 Rorug01G0172000 Rorug01G0191700 Rorug01G0191800 Rorug01G0256900 Rorug01G0257000 Rorug01G0257100 Rorug03G0198000 Rorug03G0366300.1 Rorug03G0366400.1 Rorug03G0366500.1 Rorug04G0081200 Rorug04G0081200 Rorug04G0081200 Rorug04G0233700 Rorug04G0233800 Rorug04G0233800 Rorug06G0013300
rosa_samantha	Rh1CG138800 Rh1CG161300 Rh1CG173800 Rh1CG179800 Rh1CG180100 Rh1CG180500 Rh1CG180800 Rh1CG180900 Rh1CG194100 Rh1DG205100 Rh3AG236300 Rh4AG052000 Rh4AG052100 Rh4AG145900 Rh4AG289700 Rh4AG289800 Rh6AG136800 Rh6AG137300 Rh6BG133600 Rh6CG132000 Rh6CG134000 Rh6DG119300
rosa_wichuraiana	Rw0G003420 Rw1G015500 Rw1G016110 Rw1G016180 Rw1G016210 Rw1G016230 Rw1G016280 Rw1G016440 Rw1G016450 Rw1G016460 Rw1G016480 Rw1G017490 Rw1G024140 Rw1G024160 Rw3G022530 Rw4G004140 Rw4G004190 Rw4G011850 Rw6G011800

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	624, 2210
Acc16I	TGCGCA	1 cut(s)	324
AccI	GTMKAC	2 cut(s)	1339, 1378
AccII	CGCG	1 cut(s)	3039
AccIII	TCCGGA	1 cut(s)	821
AciI	CCGC	3 cut(s)	816, 1613, 1777
AclWI	GGATC	4 cut(s)	257, 337, 1578, 2527
AcoI	YGGCCR	3 cut(s)	585, 1942, 2346
AcsI	RAATTY	6 cut(s)	137, 287, 610, 984, 1090, 2780
AcuI	CTGAAG	9 cut(s)	240, 264, 645, 2147, 2423, 2471, 2681, 2834, 2888
AfaI	GTAC	5 cut(s)	396, 493, 1410, 2175, 2294
AfiI	CCNNNNNNNGG	4 cut(s)	1231, 1894, 2703, 3075
AflII	CTTAAG	1 cut(s)	2701
AflIII	ACRYGT	2 cut(s)	2457, 3004
AhlI	ACTAGT	1 cut(s)	391
AjnI	CCWGG	2 cut(s)	78, 476
AjuI	GAANNNNNNNTTGG	4 cut(s)	2224, 2256, 2751, 2783
AluBI	AGCT	8 cut(s)	319, 334, 665, 1103, 2449, 2581, 2620, 2692
AluI	AGCT	8 cut(s)	319, 334, 665, 1103, 2449, 2581, 2620, 2692
Alw21I	GWGCWC	3 cut(s)	132, 1362, 2622
Alw26I	GTCTC	4 cut(s)	1379, 1766, 1959, 2502
AlwI	GGATC	4 cut(s)	257, 337, 1578, 2527
AlwNI	CAGNNNCTG	1 cut(s)	2432
Aor13HI	TCCGGA	1 cut(s)	821
AoxI	GGCC	4 cut(s)	6, 585, 1942, 2346
ApeKI	GCWGC	4 cut(s)	425, 2581, 2692, 3059
ApoI	RAATTY	6 cut(s)	137, 287, 610, 984, 1090, 2780
AseI	ATTAAT	1 cut(s)	1661
AspLEI	GCGC	2 cut(s)	325, 2890
AspS9I	GGNCC	3 cut(s)	564, 1057, 1841
AsuC2I	CCSGG	1 cut(s)	347
AsuHPI	GGTGA	6 cut(s)	659, 769, 781, 1759, 2537, 2678
AsuII	TTCGAA	2 cut(s)	1876, 2733
AvaII	GGWCC	3 cut(s)	564, 1057, 1841
AxyI	CCTNAGG	1 cut(s)	1566
BalI	TGGCCA	3 cut(s)	587, 1944, 2348
BanII	GRGCYC	1 cut(s)	2622
BarI	GAAGNNNNNNTAC	6 cut(s)	100, 132, 378, 410, 1608, 1640
BbsI	GAAGAC	4 cut(s)	1361, 1409, 1885, 2840
Bbv12I	GWGCWC	3 cut(s)	132, 1362, 2622
BbvCI	CCTCAGC	1 cut(s)	1206
BbvI	GCAGC	4 cut(s)	412, 2568, 2679, 3071
BccI	CCATC	9 cut(s)	805, 970, 1262, 1358, 1531, 1934, 2161, 2522, 2891
BceAI	ACGGC	2 cut(s)	1743, 2893
BciT130I	CCWGG	2 cut(s)	80, 478
BciVI	GTATCC	2 cut(s)	1040, 2212
BclI	TGATCA	3 cut(s)	1189, 2668, 3072
BcnI	CCSGG	1 cut(s)	347
BcoDI	GTCTC	4 cut(s)	1379, 1766, 1959, 2502
BcuI	ACTAGT	1 cut(s)	391
BfaI	CTAG	6 cut(s)	392, 791, 1214, 2067, 2102, 2189
BfmI	CTRYAG	2 cut(s)	1024, 2959
BfoI	RGCGCY	1 cut(s)	2891
BfrI	CTTAAG	1 cut(s)	2701
BfuI	GTATCC	2 cut(s)	1040, 2212
BglII	AGATCT	2 cut(s)	1706, 2191
BisI	GCNGC	5 cut(s)	426, 817, 2582, 2693, 3060
BlsI	GCNGC	5 cut(s)	427, 818, 2583, 2694, 3061
BmcAI	AGTACT	1 cut(s)	1410
Bme1390I	CCNGG	3 cut(s)	80, 347, 478
Bme18I	GGWCC	3 cut(s)	564, 1057, 1841
BmgT120I	GGNCC	3 cut(s)	564, 1057, 1841
BmiI	GGNNCC	3 cut(s)	182, 565, 820
BmrFI	CCNGG	3 cut(s)	80, 347, 478
BmrI	ACTGGG	1 cut(s)	2943
BmsI	GCATC	6 cut(s)	412, 537, 1187, 1279, 1308, 2934
BmuI	ACTGGG	1 cut(s)	2943
BpiI	GAAGAC	4 cut(s)	1361, 1409, 1885, 2840
BpmI	CTGGAG	1 cut(s)	2528
Bpu10I	CCTNAGC	1 cut(s)	1206
Bpu14I	TTCGAA	2 cut(s)	1876, 2733
BpuEI	CTTGAG	4 cut(s)	313, 1062, 2131, 2906
BpuMI	CCSGG	1 cut(s)	347
Bsa29I	ATCGAT	1 cut(s)	550
BsaBI	GATNNNNATC	2 cut(s)	944, 1253
BsaI	GGTCTC	2 cut(s)	1959, 2502
BsaJI	CCNNGG	6 cut(s)	9, 66, 259, 346, 2716, 2758
BsaWI	WCCGGW	2 cut(s)	821, 1843
BsaXI	ACNNNNNCTCC	4 cut(s)	475, 480, 505, 510
Bsc4I	CCNNNNNNNGG	4 cut(s)	1231, 1894, 2703, 3075
Bse1I	ACTGG	6 cut(s)	125, 759, 1225, 1701, 2688, 2949
Bse21I	CCTNAGG	1 cut(s)	1566
Bse8I	GATNNNNATC	2 cut(s)	944, 1253
BseAI	TCCGGA	1 cut(s)	821
BseBI	CCWGG	2 cut(s)	80, 478
BseCI	ATCGAT	1 cut(s)	550
BseDI	CCNNGG	6 cut(s)	9, 66, 259, 346, 2716, 2758
BseGI	GGATG	5 cut(s)	448, 816, 1009, 1178, 1903
BseJI	GATNNNNATC	2 cut(s)	944, 1253
BseLI	CCNNNNNNNGG	4 cut(s)	1231, 1894, 2703, 3075
BseMII	CTCAG	5 cut(s)	593, 1220, 1557, 2111, 2249
BseNI	ACTGG	6 cut(s)	125, 759, 1225, 1701, 2688, 2949
BseRI	GAGGAG	6 cut(s)	496, 501, 1031, 1328, 1820, 2994
BseXI	GCAGC	4 cut(s)	412, 2568, 2679, 3071
BseYI	CCCAGC	1 cut(s)	1230
Bsh1236I	CGCG	1 cut(s)	3039
BshFI	GGCC	4 cut(s)	8, 587, 1944, 2348
BshVI	ATCGAT	1 cut(s)	550
BsiHKAI	GWGCWC	3 cut(s)	132, 1362, 2622
BsiSI	CCGG	4 cut(s)	346, 822, 1135, 1844
BslFI	GGGAC	2 cut(s)	1436, 1793
BslI	CCNNNNNNNGG	4 cut(s)	1231, 1894, 2703, 3075
BsmAI	GTCTC	4 cut(s)	1379, 1766, 1959, 2502
BsmBI	CGTCTC	2 cut(s)	1379, 1766
BsmFI	GGGAC	2 cut(s)	1436, 1793
BsnI	GGCC	4 cut(s)	8, 587, 1944, 2348
Bso31I	GGTCTC	2 cut(s)	1959, 2502
Bsp119I	TTCGAA	2 cut(s)	1876, 2733
Bsp1286I	GDGCHC	3 cut(s)	132, 1362, 2622
Bsp13I	TCCGGA	1 cut(s)	821
BspACI	CCGC	3 cut(s)	816, 1613, 1777
BspANI	GGCC	4 cut(s)	8, 587, 1944, 2348
BspCNI	CTCAG	5 cut(s)	594, 1219, 1558, 2112, 2250
BspDI	ATCGAT	1 cut(s)	550
BspEI	TCCGGA	1 cut(s)	821
BspFNI	CGCG	1 cut(s)	3039
BspHI	TCATGA	2 cut(s)	703, 1573
BspLI	GGNNCC	3 cut(s)	182, 565, 820
BspMAI	CTGCAG	1 cut(s)	2963
BspPI	GGATC	4 cut(s)	257, 337, 1578, 2527
BspT104I	TTCGAA	2 cut(s)	1876, 2733
BspTI	CTTAAG	1 cut(s)	2701
BspTNI	GGTCTC	2 cut(s)	1959, 2502
BsrI	ACTGG	6 cut(s)	125, 759, 1225, 1701, 2688, 2949
BssECI	CCNNGG	6 cut(s)	9, 66, 259, 346, 2716, 2758
BssT1I	CCWWGG	4 cut(s)	9, 66, 259, 2758
Bst2UI	CCWGG	2 cut(s)	80, 478
Bst4CI	ACNGT	9 cut(s)	235, 496, 1239, 1357, 1390, 1408, 1861, 2297, 2313
Bst6I	CTCTTC	4 cut(s)	494, 930, 1292, 1930
BstAFI	CTTAAG	1 cut(s)	2701
BstAPI	GCANNNNNTGC	1 cut(s)	2144
BstBI	TTCGAA	2 cut(s)	1876, 2733
BstC8I	GCNNGC	9 cut(s)	282, 321, 526, 1176, 1362, 1790, 2882, 2886, 2892
BstDEI	CTNAG	8 cut(s)	602, 1206, 1373, 1566, 2039, 2120, 2258, 2411
BstF5I	GGATG	5 cut(s)	448, 816, 1009, 1178, 1903
BstFNI	CGCG	1 cut(s)	3039
BstH2I	RGCGCY	1 cut(s)	2891
BstHHI	GCGC	2 cut(s)	325, 2890
BstMAI	GTCTC	4 cut(s)	1379, 1766, 1959, 2502
BstMWI	GCNNNNNNNGC	4 cut(s)	331, 1175, 2144, 2260
BstNI	CCWGG	2 cut(s)	80, 478
BstNSI	RCATGY	2 cut(s)	2461, 3008
BstSCI	CCNGG	3 cut(s)	78, 345, 476
BstSFI	CTRYAG	2 cut(s)	1024, 2959
BstUI	CGCG	1 cut(s)	3039
BstV1I	GCAGC	4 cut(s)	412, 2568, 2679, 3071
BstV2I	GAAGAC	4 cut(s)	1361, 1409, 1885, 2840
BstX2I	RGATCY	3 cut(s)	1706, 2191, 2519
BstYI	RGATCY	3 cut(s)	1706, 2191, 2519
Bsu15I	ATCGAT	1 cut(s)	550
Bsu36I	CCTNAGG	1 cut(s)	1566
BsuI	GTATCC	2 cut(s)	1040, 2212
BsuRI	GGCC	4 cut(s)	8, 587, 1944, 2348
BsuTUI	ATCGAT	1 cut(s)	550
BtsCI	GGATG	5 cut(s)	448, 816, 1009, 1178, 1903
BtsI	GCAGTG	2 cut(s)	172, 3069
BtsIMutI	CAGTG	9 cut(s)	132, 172, 752, 1232, 1353, 1866, 2302, 2308, 3069
Cac8I	GCNNGC	9 cut(s)	282, 321, 526, 1176, 1362, 1790, 2882, 2886, 2892
CaiI	CAGNNNCTG	1 cut(s)	2432
CciI	TCATGA	2 cut(s)	703, 1573
CfoI	GCGC	2 cut(s)	325, 2890
Cfr13I	GGNCC	3 cut(s)	564, 1057, 1841
ClaI	ATCGAT	1 cut(s)	550
CseI	GACGC	3 cut(s)	371, 773, 860
CsiI	ACCWGGT	1 cut(s)	78
Csp6I	GTAC	5 cut(s)	395, 492, 1409, 2174, 2293
CviAII	CATG	7 cut(s)	704, 1574, 1646, 1766, 2458, 2839, 3005
CviQI	GTAC	5 cut(s)	395, 492, 1409, 2174, 2293
DdeI	CTNAG	8 cut(s)	602, 1206, 1373, 1566, 2039, 2120, 2258, 2411
EaeI	YGGCCR	3 cut(s)	585, 1942, 2346
Eam1104I	CTCTTC	4 cut(s)	494, 930, 1292, 1930
EarI	CTCTTC	4 cut(s)	494, 930, 1292, 1930
Ecl136II	GAGCTC	1 cut(s)	2620
Eco130I	CCWWGG	4 cut(s)	9, 66, 259, 2758
Eco24I	GRGCYC	1 cut(s)	2622
Eco31I	GGTCTC	2 cut(s)	1959, 2502
Eco32I	GATATC	1 cut(s)	2466
Eco47I	GGWCC	3 cut(s)	564, 1057, 1841
Eco53kI	GAGCTC	1 cut(s)	2620
Eco57I	CTGAAG	9 cut(s)	240, 264, 645, 2147, 2423, 2471, 2681, 2834, 2888
Eco81I	CCTNAGG	1 cut(s)	1566
EcoICRI	GAGCTC	1 cut(s)	2620
EcoRI	GAATTC	1 cut(s)	1090
EcoRII	CCWGG	2 cut(s)	78, 476
EcoRV	GATATC	1 cut(s)	2466
EcoT14I	CCWWGG	4 cut(s)	9, 66, 259, 2758
EcoT22I	ATGCAT	1 cut(s)	1433
EcoT38I	GRGCYC	1 cut(s)	2622
ErhI	CCWWGG	4 cut(s)	9, 66, 259, 2758
Esp3I	CGTCTC	2 cut(s)	1379, 1766
FaeI	CATG	7 cut(s)	707, 1577, 1649, 1769, 2461, 2842, 3008
FalI	AAGNNNNNCTT	2 cut(s)	643, 675
FaqI	GGGAC	2 cut(s)	1436, 1793
FatI	CATG	7 cut(s)	703, 1573, 1645, 1765, 2457, 2838, 3004
FauI	CCCGC	1 cut(s)	1770
FauNDI	CATATG	2 cut(s)	1070, 1678
FbaI	TGATCA	3 cut(s)	1189, 2668, 3072
FblI	GTMKAC	2 cut(s)	1339, 1378
Fnu4HI	GCNGC	5 cut(s)	426, 817, 2582, 2693, 3060
FokI	GGATG	5 cut(s)	455, 823, 1016, 1165, 1910
FriOI	GRGCYC	1 cut(s)	2622
Fsp4HI	GCNGC	5 cut(s)	426, 817, 2582, 2693, 3060
FspBI	CTAG	6 cut(s)	392, 791, 1214, 2067, 2102, 2189
FspI	TGCGCA	1 cut(s)	324
GlaI	GCGC	2 cut(s)	324, 2889
GluI	GCNGC	5 cut(s)	426, 817, 2582, 2693, 3060
GsaI	CCCAGC	1 cut(s)	1234
GsuI	CTGGAG	1 cut(s)	2528
HaeII	RGCGCY	1 cut(s)	2891
HaeIII	GGCC	4 cut(s)	8, 587, 1944, 2348
HapII	CCGG	4 cut(s)	346, 822, 1135, 1844
HgaI	GACGC	3 cut(s)	371, 773, 860
HhaI	GCGC	2 cut(s)	325, 2890
Hin1II	CATG	7 cut(s)	707, 1577, 1649, 1769, 2461, 2842, 3008
Hin6I	GCGC	2 cut(s)	323, 2888
HinP1I	GCGC	2 cut(s)	323, 2888
HincII	GTYRAC	2 cut(s)	1828, 2640
HindII	GTYRAC	2 cut(s)	1828, 2640
HpaI	GTTAAC	2 cut(s)	1828, 2640
HpaII	CCGG	4 cut(s)	346, 822, 1135, 1844
HphI	GGTGA	6 cut(s)	659, 769, 781, 1759, 2537, 2678
Hpy166II	GTNNAC	7 cut(s)	74, 85, 1340, 1379, 1828, 2107, 2640
Hpy8I	GTNNAC	7 cut(s)	74, 85, 1340, 1379, 1828, 2107, 2640
HpyCH4III	ACNGT	9 cut(s)	235, 496, 1239, 1357, 1390, 1408, 1861, 2297, 2313
HpyCH4IV	ACGT	1 cut(s)	2342
HpyF10VI	GCNNNNNNNGC	4 cut(s)	331, 1175, 2144, 2260
HpyF3I	CTNAG	8 cut(s)	602, 1206, 1373, 1566, 2039, 2120, 2258, 2411
HpySE526I	ACGT	1 cut(s)	2342
Hsp92II	CATG	7 cut(s)	707, 1577, 1649, 1769, 2461, 2842, 3008
HspAI	GCGC	2 cut(s)	323, 2888
Kpn2I	TCCGGA	1 cut(s)	821
Ksp22I	TGATCA	3 cut(s)	1189, 2668, 3072
KspAI	GTTAAC	2 cut(s)	1828, 2640
LmnI	GCTCC	2 cut(s)	824, 2625
Lsp1109I	GCAGC	4 cut(s)	412, 2568, 2679, 3071
LweI	GCATC	6 cut(s)	412, 537, 1187, 1279, 1308, 2934
MabI	ACCWGGT	1 cut(s)	78
MaeI	CTAG	6 cut(s)	392, 791, 1214, 2067, 2102, 2189
MaeII	ACGT	1 cut(s)	2342
MaeIII	GTNAC	5 cut(s)	229, 1585, 2079, 2607, 3064
MfeI	CAATTG	3 cut(s)	400, 1653, 2934
MflI	RGATCY	3 cut(s)	1706, 2191, 2519
MhlI	GDGCHC	3 cut(s)	132, 1362, 2622
MlsI	TGGCCA	3 cut(s)	587, 1944, 2348
MluNI	TGGCCA	3 cut(s)	587, 1944, 2348
MlyI	GAGTC	5 cut(s)	309, 1069, 1591, 2052, 2131
MmeI	TCCRAC	4 cut(s)	714, 1057, 1702, 2421
Mox20I	TGGCCA	3 cut(s)	587, 1944, 2348
Mph1103I	ATGCAT	1 cut(s)	1433
MroI	TCCGGA	1 cut(s)	821
MscI	TGGCCA	3 cut(s)	587, 1944, 2348
MslI	CAYNNNNRTG	1 cut(s)	1355
Msp20I	TGGCCA	3 cut(s)	587, 1944, 2348
MspCI	CTTAAG	1 cut(s)	2701
MspI	CCGG	4 cut(s)	346, 822, 1135, 1844
MspR9I	CCNGG	3 cut(s)	80, 347, 478
MunI	CAATTG	3 cut(s)	400, 1653, 2934
MvaI	CCWGG	2 cut(s)	80, 478
MvnI	CGCG	1 cut(s)	3039
MwoI	GCNNNNNNNGC	4 cut(s)	331, 1175, 2144, 2260
NciI	CCSGG	1 cut(s)	347
NdeI	CATATG	2 cut(s)	1070, 1678
NlaIII	CATG	7 cut(s)	707, 1577, 1649, 1769, 2461, 2842, 3008
NlaIV	GGNNCC	3 cut(s)	182, 565, 820
NmuCI	GTSAC	1 cut(s)	3064
NsbI	TGCGCA	1 cut(s)	324
NsiI	ATGCAT	1 cut(s)	1433
NspI	RCATGY	2 cut(s)	2461, 3008
NspV	TTCGAA	2 cut(s)	1876, 2733
PagI	TCATGA	2 cut(s)	703, 1573
PciI	ACATGT	2 cut(s)	2457, 3004
PfeI	GAWTC	5 cut(s)	452, 1107, 2098, 2735, 2955
PfoI	TCCNGGA	1 cut(s)	476
PkrI	GCNGC	5 cut(s)	427, 818, 2583, 2694, 3061
PleI	GAGTC	5 cut(s)	308, 1069, 1591, 2051, 2130
PpsI	GAGTC	5 cut(s)	308, 1069, 1591, 2051, 2130
PscI	ACATGT	2 cut(s)	2457, 3004
PshBI	ATTAAT	1 cut(s)	1661
PsiI	TTATAA	2 cut(s)	624, 2210
Psp124BI	GAGCTC	1 cut(s)	2622
Psp6I	CCWGG	2 cut(s)	78, 476
PspFI	CCCAGC	1 cut(s)	1230
PspGI	CCWGG	2 cut(s)	78, 476
PspN4I	GGNNCC	3 cut(s)	182, 565, 820
PspPI	GGNCC	3 cut(s)	564, 1057, 1841
PstI	CTGCAG	1 cut(s)	2963
PstNI	CAGNNNCTG	1 cut(s)	2432
PsuI	RGATCY	3 cut(s)	1706, 2191, 2519
RsaI	GTAC	5 cut(s)	396, 493, 1410, 2175, 2294
RsaNI	GTAC	5 cut(s)	395, 492, 1409, 2174, 2293
RseI	CAYNNNNRTG	1 cut(s)	1355
SacI	GAGCTC	1 cut(s)	2622
SatI	GCNGC	5 cut(s)	426, 817, 2582, 2693, 3060
Sau96I	GGNCC	3 cut(s)	564, 1057, 1841
ScaI	AGTACT	1 cut(s)	1410
SchI	GAGTC	5 cut(s)	309, 1069, 1591, 2052, 2131
ScrFI	CCNGG	3 cut(s)	80, 347, 478
SduI	GDGCHC	3 cut(s)	132, 1362, 2622
SexAI	ACCWGGT	1 cut(s)	78
SfaNI	GCATC	6 cut(s)	412, 537, 1187, 1279, 1308, 2934
SfcI	CTRYAG	2 cut(s)	1024, 2959
SfuI	TTCGAA	2 cut(s)	1876, 2733
SinI	GGWCC	3 cut(s)	564, 1057, 1841
SmiMI	CAYNNNNRTG	1 cut(s)	1355
SmlI	CTYRAG	5 cut(s)	292, 1077, 2110, 2701, 2921
SmoI	CTYRAG	5 cut(s)	292, 1077, 2110, 2701, 2921
SpeI	ACTAGT	1 cut(s)	391
SsiI	CCGC	3 cut(s)	816, 1613, 1777
SspI	AATATT	2 cut(s)	36, 3031
SspMI	CTAG	6 cut(s)	392, 791, 1214, 2067, 2102, 2189
SstI	GAGCTC	1 cut(s)	2622
StyD4I	CCNGG	3 cut(s)	78, 345, 476
StyI	CCWWGG	4 cut(s)	9, 66, 259, 2758
TaaI	ACNGT	9 cut(s)	235, 496, 1239, 1357, 1390, 1408, 1861, 2297, 2313
TaiI	ACGT	1 cut(s)	2345
TaqI	TCGA	5 cut(s)	550, 608, 1094, 1876, 2733
TaqII	GACCGA	1 cut(s)	2484
TatI	WGTACW	1 cut(s)	1408
TauI	GCSGC	1 cut(s)	819
TfiI	GAWTC	5 cut(s)	452, 1107, 2098, 2735, 2955
TscAI	CASTG	9 cut(s)	132, 179, 759, 1232, 1360, 1866, 2302, 2308, 3069
TseFI	GTSAC	1 cut(s)	3064
TseI	GCWGC	4 cut(s)	425, 2581, 2692, 3059
Tsp45I	GTSAC	1 cut(s)	3064
TspGWI	ACGGA	2 cut(s)	120, 173
TspRI	CASTG	9 cut(s)	132, 179, 759, 1232, 1360, 1866, 2302, 2308, 3069
Vha464I	CTTAAG	1 cut(s)	2701
VpaK11BI	GGWCC	3 cut(s)	564, 1057, 1841
VspI	ATTAAT	1 cut(s)	1661
XapI	RAATTY	6 cut(s)	137, 287, 610, 984, 1090, 2780
XbaI	TCTAGA	2 cut(s)	2066, 2188
XceI	RCATGY	2 cut(s)	2461, 3008
XcmI	CCANNNNNNNNNTGG	2 cut(s)	174, 997
XmiI	GTMKAC	2 cut(s)	1339, 1378
XspI	CTAG	6 cut(s)	392, 791, 1214, 2067, 2102, 2189
ZrmI	AGTACT	1 cut(s)	1410
Zsp2I	ATGCAT	1 cut(s)	1433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.