AT5G48620

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
19716104 .. 19721477
5374 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G48620.1

Sequence Viewer

Length: 2727 bp
ATGGCTGAAGGATTTGTGTCGTTTGGGCTTGAGAAGCTTTGGGATCTCCTGAGTCGAGAATCAGAGCGATTGCAGGGAATTGATGAGCAACTTGATGGACTAAAGCGTCAGCTGAGAAGTTTACAGTCGCTGTTGAAAGATGCAGATGCCAAGAAACATGGAAGTGATAGGGTGAGGAACTTCTTGGAAGATGTCAAAGACCTTGTTTTTGATGCTGAGGATATAATTGAATCCTATGTTCTGAACAAACTTAGAGGAGAAGGAAAAGGGGTCAAGAAGCATGTGAGACGACTTGCTCGCTTCTTAACGGATCGCCACAAAGTTGCTTCAGATATCGAGGGTATAACTAAGAGGATCTCTGATGTGATTGGGGAGATGCAGAGTTTTGGGATACAACAAATCATTGATGGTGTTCGTTCGCTGTCTCTTCAGGAAAGACAAAGGGTGCAGAGGGAGATCCGACAAACGTATCCTGACAGTTCTGAAAGCGATCTTGTCGGGGTGGAGCAGAGTGTTGAAGAATTGGTTGGTCATTTGGTGGAGAATGATATTTATCAAGTGGTTTCTATAGCTGGGATGGGCGGTATTGGTAAAACCACTCTGGCTAGACAAGTCTTTCATCATGATTTAGTCCGGCGTCACTTTGATGGATTCGCATGGGTCTGTGTTTCGCAACAATTTACACTGAAACATGTTTGGCAGAGGATCTTGCAAGAACTTCAGCCACATGATGGGAATATTTTACAGATGGACGAATCTGCACTTCAGCCTAAACTCTTTCAATTGTTAGAGACCGGTAGATATTTACTTGTCCTCGATGATGTATGGAAAAAAGAAGACTGGGATCGAATAAAAGCAGTGTTTCCACGGAAAAGAGGTTGGAAGATGCTGCTTACTTCTCGAAATGAAGGTGTTGGGATACATGCTGATCCAACATGTTTAACTTTTAGAGCAAGCATCCTTAACCCTGAAGAAAGTTGGAAGCTCTGTGAGAGAATAGTATTCCCTAGGAGAGATGAAACTGAAGTAAGGCTTGATGAAGAAATGGAAGCCATGGGAAAGGAAATGGTCACACATTGTGGAGGACTACCATTAGCTGTTAAAGCGTTGGGAGGCTTGTTAGCTAATAAACATACAGTTCCTGAGTGGAAAAGAGTTTCTGACAATATTGGATCTCAAATAGTAGGAGGATCGTGCTTAGATGACAACAGTCTCAATTCGGTTAACCGAATATTGTCTCTGAGTTATGAAGATTTGCCAACGCATTTAAAGCATCGCTTCCTTTACCTAGCCCATTTCCCTGAAGATTCCAAGATATACACGCAGGATTTGTTCAATTACTGGGCTGCAGAAGGGATTTACGATGGATCAACCATCCAAGATAGTGGAGAATACTACCTAGAAGAGCTAGTGAGGAGAAATTTGGTTATTGCAGACAACAGGTATTTGAGTTTGGAATTTAATTTTTGTCAAATGCACGACATGATGAGAGAAGTATGTTTATCTAAAGCCAAAGAAGAGAACTTCTTACAAATTATCAAAGACCCTACTTCCACCTCTACCATCAATGCTCAATCTCCTAGTAGATCTCGCAGATTCAGCATACATAGTGGTAAAGCCTTTCATATATTGGGACACAGAAACAATCCAAAGGTGAGATCTCTTATAGTTTCGAGATTCGAGGAAGACTTTTGGATACGATCAGCTTCAGTCTTCCACAACTTAACATTGCTCAGGGTGTTGGATCTTTCTAGGGTAAAGTTTGAAGGAGGGAAGTTACCTTCTAGCATTGGAGGGCTCATCCACTTGAGATACTTGAGCTTATACGGAGCTGTGGTATCTCATCTACCTTCTACTATGCGGAACTTAAAGCTTCTGCTCTTTTTGAACTTACGTGTTGATAACAAGGAACCGATTCACGTGCCAAATGTTTTGAAAGAGATGCTAGAGTTGAGGTACCTTTCCCTACCTCAGGAAATGGATGATAAAACCAAGTTGGAATTGGGTGATCTAGTGAACCTGGAGTACTTGTGGTATTTCTCAACGCAACACAGTAGTGTGACAGACCTCCTCCGTATGACTAAGCTCCGGAATCTCGGTGTATCTTTGAGCGAAAGGTGCAATTTTGAAACTCTATCGTCATCTCTCCGTGAATTGCGAAACCTCGAAATGCTTAATGTCCTTTTTTCGCCCGAAATCGTTATGGTTGATCATATGGGAGAGTTTGTTCTGGATCATTTTATTCATCTAAAACAGTTGGGATTGGCAGTACGTATGTCAAAGATTCCTGATCAACATCAATTCCCTCCCCACCTTGCCCACATACATCTAGTGCATTGCGTCATGAAAGAGGATCCAATGCCAATTCTAGAAAAGTTGCTTCATTTGAAGTCGGTTGCATTAAGTTATGGTGCTTTCATCGGGCGGAGAGTGGTGTGCTCAAAAGGCGGATTTCCTCAATTATGTGCCCTAGGAATATCTGGAGAATCAGAATTGGAAGAGTGGATAGTAGAAGAAGGGTCGATGCCATGTCTTCGTACTTTGACTATACATGATTGCGAAAAGTTGAAGGAACTTCCTGATGGACTCAAGTACATAACATCCTTAAAGGAGCTAAAGATTAGAGAAATGAAGAGGGAGTGGAAGGAGAAACTGGTACCAGGTGGAGAAGATTACTACAAAGTCCAACACATTCCCGATGTTCAATTTATCAACTGTGACCTGTAG

Protein Analysis

908

Amino Acids

104.45

Weight (kDa)

6.37

Isoelectric Point (pI)

48.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 5 - 91 1.2e-20 Rx N-terminal domain
NB-ARC PF00931 169 - 339 1.6e-57 NB-ARC domain
WHD_DRP PF23559 433 - 499 7.3e-10 Disease resistance protein Winged helix domain
LRR_14 PF23598 551 - 877 3.7e-32 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000069)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G50180 AT1G53350 AT1G58390 AT1G58390 AT1G58400 AT1G58400 AT1G58400 AT1G58410 AT1G58410 AT1G58410 AT1G58410 AT1G58602 AT1G58602 AT1G58807 AT1G58807 AT1G58848 AT1G58848 AT1G59124 AT1G59124 AT1G59218 AT1G59218 AT1G59218 AT1G59620 AT1G59780 AT1G59780 AT5G35450 AT5G35450 AT5G43470 AT5G43470 AT5G43470 AT5G43470 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620
fragaria_vesca FvH4_4g04072 FvH4_4g22931 FvH4_4g22931 FvH4_4g22940 FvH4_6g49940 FvH4_6g49940 FvH4_7g08100 FvH4_7g08870 FvH4_7g08870 FvH4_7g09280 FvH4_7g09290 FvH4_7g15190 FvH4_7g15200 FvH4_7g15240 FvH4_7g15240 FvH4_7g33440
malus_domestica MD00G1174600.v1.1 MD01G1113700.v1.1 MD03G1071300.v1.1 MD04G1041500.v1.1 MD04G1238000.v1.1 MD07G1029000.v1.1 MD07G1092100.v1.1 MD07G1092300.v1.1 MD07G1092600.v1.1 MD12G1256300.v1.1 MD13G1128200.v1.1 MD13G1128400.v1.1 MD17G1268000.v1.1
prunus_persica Prupe.1G041300_v2.0.a1 Prupe.1G041300_v2.0.a1 Prupe.1G042900_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043600_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G046700_v2.0.a1 Prupe.1G047700_v2.0.a1 Prupe.1G047900_v2.0.a1 Prupe.1G048000_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G049900_v2.0.a1 Prupe.1G051500_v2.0.a1 Prupe.1G051800_v2.0.a1 Prupe.1G051900_v2.0.a1 Prupe.1G052200_v2.0.a1 Prupe.1G194900_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117300_v2.0.a1 Prupe.2G117400_v2.0.a1 Prupe.2G117500_v2.0.a1 Prupe.2G117700_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G119900_v2.0.a1
pyrus_communis pycom03g05750 pycom04g21110 pycom07g07530 pycom07g07590 pycom13g11110 pycom13g11140 pycom13g11160 pycom13g11170 pycom17g26680
rosa_chinensis RchiOBHm_Chr1g0341231 RchiOBHm_Chr1g0344091 RchiOBHm_Chr1g0344161 RchiOBHm_Chr1g0345001 RchiOBHm_Chr1g0345351 RchiOBHm_Chr1g0345371 RchiOBHm_Chr1g0345391 RchiOBHm_Chr1g0345531 RchiOBHm_Chr1g0345551 RchiOBHm_Chr1g0345571 RchiOBHm_Chr1g0345581 RchiOBHm_Chr1g0345661 RchiOBHm_Chr1g0345691 RchiOBHm_Chr1g0345761 RchiOBHm_Chr1g0345791 RchiOBHm_Chr1g0345821 RchiOBHm_Chr1g0345911 RchiOBHm_Chr1g0345941 RchiOBHm_Chr1g0357611 RchiOBHm_Chr1g0357911 RchiOBHm_Chr1g0357921 RchiOBHm_Chr1g0357931 RchiOBHm_Chr1g0357971 RchiOBHm_Chr1g0358121 RchiOBHm_Chr1g0383491 RchiOBHm_Chr1g0383511 RchiOBHm_Chr1g0383521 RchiOBHm_Chr3g0480581 RchiOBHm_Chr4g0394341 RchiOBHm_Chr4g0394361 RchiOBHm_Chr4g0394411 RchiOBHm_Chr4g0394441 RchiOBHm_Chr4g0407681 RchiOBHm_Chr4g0429191 RchiOBHm_Chr4g0429201 RchiOBHm_Chr4g0429211 RchiOBHm_Chr4g0429221 RchiOBHm_Chr6g0265091
rosa_laevigata RLG00000007088 RLG00000008700 RLG00000009190 RLG00000009702 RLG00000014210 RLG00000028829 RLG00000028833 RLG00000028837 RLG00000028838 RLG00000028921 RLG00000028926
rosa_multiflora Rmu_co8366955.1_g000001 Rmu_co8394205.1_g000001 Rmu_sc0000019.1_g000001 Rmu_sc0000054.1_g000031 Rmu_sc0000054.1_g000033 Rmu_sc0000200.1_g000002 Rmu_sc0000200.1_g000007 Rmu_sc0000200.1_g000018 Rmu_sc0000200.1_g000020 Rmu_sc0000200.1_g000021 Rmu_sc0000251.1_g000012 Rmu_sc0000251.1_g000015 Rmu_sc0000251.1_g000028 Rmu_sc0000253.1_g000015 Rmu_sc0000255.1_g000045 Rmu_sc0000255.1_g000046 Rmu_sc0001292.1_g000013 Rmu_sc0001292.1_g000018 Rmu_sc0001292.1_g000028 Rmu_sc0001292.1_g000029 Rmu_sc0001349.1_g000006 Rmu_sc0001349.1_g000014 Rmu_sc0001582.1_g000006 Rmu_sc0001582.1_g000018 Rmu_sc0001582.1_g000020 Rmu_sc0001692.1_g000007 Rmu_sc0001692.1_g000024 Rmu_sc0001692.1_g000026 Rmu_sc0001692.1_g000029 Rmu_sc0001692.1_g000030 Rmu_sc0001835.1_g000006 Rmu_sc0001835.1_g000010 Rmu_sc0002071.1_g000005 Rmu_sc0002276.1_g000002 Rmu_sc0002276.1_g000009 Rmu_sc0002329.1_g000018 Rmu_sc0002329.1_g000023 Rmu_sc0002329.1_g000025 Rmu_sc0002523.1_g000005 Rmu_sc0003573.1_g000005 Rmu_sc0003573.1_g000006 Rmu_sc0004099.1_g000021 Rmu_sc0005812.1_g000009 Rmu_sc0006271.1_g000002 Rmu_sc0006287.1_g000038 Rmu_sc0006439.1_g000008 Rmu_sc0007456.1_g000004 Rmu_sc0007581.1_g000009 Rmu_sc0007849.1_g000014 Rmu_sc0008115.1_g000012 Rmu_sc0010521.1_g000004 Rmu_sc0012471.1_g000017 Rmu_sc0014762.1_g000001 Rmu_sc0015150.1_g000003 Rmu_sc0017221.1_g000001 Rmu_sc0017299.1_g000001 Rmu_sc0017299.1_g000002 Rmu_sc0021457.1_g000001 Rmu_sc0022067.1_g000001 Rmu_sc0033275.1_g000001 Rmu_ssc0000245.1_g000012 Rmu_ssc0000359.1_g000035 Rmu_ssc0000359.1_g000067 Rmu_ssc0000359.1_g000072 Rmu_ssc0000434.1_g000005 Rmu_ssc0000434.1_g000007
rosa_roxburghii Rroxscaffold_4G00298420 Rroxscaffold_4G00298720 Rroxscaffold_4G00308990 Rroxscaffold_4G00309000 Rroxscaffold_4G00309010 Rroxscaffold_4G00309050 Rroxscaffold_4G00309070 Rroxscaffold_4G00309100 Rroxscaffold_4G00310030 Rroxscaffold_4G00310050 Rroxscaffold_4G00311880 Rroxscaffold_5G00339420 Rroxscaffold_5G00339450 Rroxscaffold_5G00344880 Rroxscaffold_5G00352270 Rroxscaffold_5G00362240 Rroxscaffold_5G00370840 Rroxscaffold_7G00202970
rosa_rugosa Rorug01G0159100.1 Rorug01G0159200.1 Rorug01G0171700 Rorug01G0171900 Rorug01G0172000 Rorug01G0191700 Rorug01G0191800 Rorug01G0256900 Rorug01G0257000 Rorug01G0257100 Rorug03G0198000 Rorug03G0366300.1 Rorug03G0366400.1 Rorug03G0366500.1 Rorug04G0081200 Rorug04G0081200 Rorug04G0081200 Rorug04G0233700 Rorug04G0233800 Rorug04G0233800 Rorug06G0013300
rosa_samantha Rh1CG138800 Rh1CG161300 Rh1CG173800 Rh1CG179800 Rh1CG180100 Rh1CG180500 Rh1CG180800 Rh1CG180900 Rh1CG194100 Rh1DG205100 Rh3AG236300 Rh4AG052000 Rh4AG052100 Rh4AG145900 Rh4AG289700 Rh4AG289800 Rh6AG136800 Rh6AG137300 Rh6BG133600 Rh6CG132000 Rh6CG134000 Rh6DG119300
rosa_wichuraiana Rw0G003420 Rw1G015500 Rw1G016110 Rw1G016180 Rw1G016210 Rw1G016230 Rw1G016280 Rw1G016440 Rw1G016450 Rw1G016460 Rw1G016480 Rw1G017490 Rw1G024140 Rw1G024160 Rw3G022530 Rw4G004140 Rw4G004190 Rw4G011850 Rw6G011800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 105
Acc65I GGTACC 2 cut(s) 1956, 2656
AccB1I GGYRCC 2 cut(s) 1956, 2656
AccB7I CCANNNNNTGG 1 cut(s) 731
AccIII TCCGGA 1 cut(s) 2088
AciI CCGC 4 cut(s) 582, 1861, 2425, 2448
AcsI RAATTY 2 cut(s) 1420, 1457
AcuI CTGAAG 9 cut(s) 27, 312, 413, 704, 749, 990, 1044, 1323, 1692
AcvI CACGTG 1 cut(s) 1921
AcyI GRCGYC 1 cut(s) 637
AdeI CACNNNGTG 1 cut(s) 1079
AfaI GTAC 6 cut(s) 1958, 2027, 2271, 2539, 2594, 2658
AfiI CCNNNNNNNGG 2 cut(s) 731, 1972
AflIII ACRYGT 3 cut(s) 691, 935, 1894
AgeI ACCGGT 1 cut(s) 794
AjnI CCWGG 2 cut(s) 2019, 2659
AjuI GAANNNNNNNTTGG 2 cut(s) 510, 542
AleI CACNNNNGTG 1 cut(s) 2055
AloI GAACNNNNNNTCC 2 cut(s) 2211, 2243
Alw21I GWGCWC 1 cut(s) 2441
Alw26I GTCTC 5 cut(s) 280, 429, 785, 1217, 1242
AlwNI CAGNNNCTG 2 cut(s) 130, 1142
Aor13HI TCCGGA 1 cut(s) 2088
ApeKI GCWGC 2 cut(s) 889, 1346
ApoI RAATTY 2 cut(s) 1420, 1457
ArsI GACNNNNNNTTYG 2 cut(s) 191, 223
AsiGI ACCGGT 1 cut(s) 794
Asp700I GAANNNNTTC 1 cut(s) 1914
Asp718I GGTACC 2 cut(s) 1956, 2656
AspA2I CCTAGG 2 cut(s) 1007, 2470
AsuHPI GGTGA 3 cut(s) 184, 1666, 2018
AvrII CCTAGG 2 cut(s) 1007, 2470
AxyI CCTNAGG 1 cut(s) 1971
BaeGI GKGCMC 1 cut(s) 2470
BaeI ACNNNNGTAYC 2 cut(s) 452, 485
BamHI GGATCC 1 cut(s) 2353
BanI GGYRCC 2 cut(s) 1956, 2656
BanII GRGCYC 1 cut(s) 1800
BbrPI CACGTG 1 cut(s) 1921
BbsI GAAGAC 4 cut(s) 843, 1692, 1705, 2525
Bbv12I GWGCWC 1 cut(s) 2441
BbvCI CCTCAGC 1 cut(s) 216
BbvI GCAGC 2 cut(s) 876, 1333
BcgI CGANNNNNNTGC 2 cut(s) 1903, 1937
BciT130I CCWGG 2 cut(s) 2021, 2661
BciVI GTATCC 4 cut(s) 384, 480, 912, 1689
BclI TGATCA 2 cut(s) 2209, 2290
BcoDI GTCTC 5 cut(s) 280, 429, 785, 1217, 1242
BfmI CTRYAG 3 cut(s) 567, 1347, 2723
BfuI GTATCC 4 cut(s) 384, 480, 912, 1689
BglII AGATCT 2 cut(s) 1586, 1658
BisI GCNGC 2 cut(s) 890, 1347
BlnI CCTAGG 2 cut(s) 1007, 2470
BlsI GCNGC 2 cut(s) 891, 1348
BmcAI AGTACT 1 cut(s) 2027
Bme1390I CCNGG 2 cut(s) 2021, 2661
BmiI GGNNCC 4 cut(s) 1911, 1958, 2355, 2658
BmrFI CCNGG 2 cut(s) 2021, 2661
BmrI ACTGGG 2 cut(s) 850, 1351
BmsI GCATC 9 cut(s) 130, 136, 202, 366, 876, 966, 1282, 1932, 2514
BmuI ACTGGG 2 cut(s) 850, 1351
BoxI GACNNNNGTC 1 cut(s) 1209
BpiI GAAGAC 4 cut(s) 843, 1692, 1705, 2525
BpmI CTGGAG 2 cut(s) 2042, 2502
Bpu10I CCTNAGC 2 cut(s) 216, 1733
BpuEI CTTGAG 4 cut(s) 50, 1828, 1837, 2573
BsaAI YACGTR 3 cut(s) 1895, 1921, 2273
BsaBI GATNNNNATC 2 cut(s) 552, 2295
BsaHI GRCGYC 1 cut(s) 637
BsaI GGTCTC 1 cut(s) 785
BsaJI CCNNGG 4 cut(s) 866, 1007, 1053, 2470
BsaWI WCCGGW 2 cut(s) 794, 2088
BsaXI ACNNNNNCTCC 6 cut(s) 1821, 1851, 2015, 2045, 2211, 2241
Bsc4I CCNNNNNNNGG 2 cut(s) 731, 1972
Bse118I RCCGGY 1 cut(s) 794
Bse1I ACTGG 3 cut(s) 845, 1346, 2658
Bse21I CCTNAGG 1 cut(s) 1971
Bse3DI GCAATG 2 cut(s) 1727, 2335
Bse8I GATNNNNATC 2 cut(s) 552, 2295
BseAI TCCGGA 1 cut(s) 2088
BseBI CCWGG 2 cut(s) 2021, 2661
BseDI CCNNGG 4 cut(s) 866, 1007, 1053, 2470
BseGI GGATG 6 cut(s) 582, 957, 1374, 1800, 1987, 2600
BseJI GATNNNNATC 2 cut(s) 552, 2295
BseLI CCNNNNNNNGG 2 cut(s) 731, 1972
BseMI GCAATG 2 cut(s) 1727, 2335
BseMII CTCAG 7 cut(s) 41, 104, 207, 1134, 1232, 1747, 1985
BseNI ACTGG 3 cut(s) 845, 1346, 2658
BseRI GAGGAG 3 cut(s) 270, 1429, 2060
BseSI GKGCMC 1 cut(s) 2470
BseXI GCAGC 2 cut(s) 876, 1333
BseYI CCCAGC 1 cut(s) 572
BsgI GTGCAG 2 cut(s) 467, 744
BshNI GGYRCC 2 cut(s) 1956, 2656
BshTI ACCGGT 1 cut(s) 794
BsiHKAI GWGCWC 1 cut(s) 2441
BsiSI CCGG 3 cut(s) 634, 795, 2089
BslFI GGGAC 1 cut(s) 1647
BslI CCNNNNNNNGG 2 cut(s) 731, 1972
BsmAI GTCTC 5 cut(s) 280, 429, 785, 1217, 1242
BsmBI CGTCTC 1 cut(s) 280
BsmFI GGGAC 1 cut(s) 1647
Bso31I GGTCTC 1 cut(s) 785
Bsp1286I GDGCHC 3 cut(s) 1800, 2441, 2470
Bsp13I TCCGGA 1 cut(s) 2088
Bsp19I CCATGG 1 cut(s) 1053
BspACI CCGC 4 cut(s) 582, 1861, 2425, 2448
BspCNI CTCAG 7 cut(s) 42, 105, 208, 1135, 1233, 1746, 1984
BspEI TCCGGA 1 cut(s) 2088
BspHI TCATGA 2 cut(s) 622, 2343
BspLI GGNNCC 4 cut(s) 1911, 1958, 2355, 2658
BspMAI CTGCAG 1 cut(s) 1351
BspQI GCTCTTC 1 cut(s) 1398
BspT107I GGYRCC 2 cut(s) 1956, 2656
BspTNI GGTCTC 1 cut(s) 785
BsrDI GCAATG 2 cut(s) 1727, 2335
BsrFI RCCGGY 1 cut(s) 794
BsrI ACTGG 3 cut(s) 845, 1346, 2658
BssAI RCCGGY 1 cut(s) 794
BssECI CCNNGG 4 cut(s) 866, 1007, 1053, 2470
BssNI GRCGYC 1 cut(s) 637
BssT1I CCWWGG 3 cut(s) 1007, 1053, 2470
Bst2UI CCWGG 2 cut(s) 2021, 2661
Bst4CI ACNGT 7 cut(s) 126, 479, 1138, 1211, 2054, 2256, 2717
Bst6I CTCTTC 5 cut(s) 432, 1398, 1512, 2493, 2627
BstACI GRCGYC 1 cut(s) 637
BstBAI YACGTR 3 cut(s) 1895, 1921, 2273
BstC8I GCNNGC 2 cut(s) 298, 955
BstDSI CCRYGG 2 cut(s) 866, 1053
BstENI CCTNNNNNAGG 1 cut(s) 1970
BstF5I GGATG 6 cut(s) 582, 957, 1374, 1800, 1987, 2600
BstMAI GTCTC 5 cut(s) 280, 429, 785, 1217, 1242
BstMWI GCNNNNNNNGC 6 cut(s) 34, 1103, 1270, 1599, 2118, 2445
BstNI CCWGG 2 cut(s) 2021, 2661
BstNSI RCATGY 4 cut(s) 284, 695, 926, 939
BstPAI GACNNNNGTC 1 cut(s) 1209
BstSCI CCNGG 2 cut(s) 2019, 2659
BstSFI CTRYAG 3 cut(s) 567, 1347, 2723
BstSLI GKGCMC 1 cut(s) 2470
BstSNI TACGTA 1 cut(s) 2273
BstV1I GCAGC 2 cut(s) 876, 1333
BstV2I GAAGAC 4 cut(s) 843, 1692, 1705, 2525
BstX2I RGATCY 9 cut(s) 43, 354, 456, 705, 1172, 1586, 1658, 1744, 2353
BstXI CCANNNNNNTGG 1 cut(s) 1385
BstYI RGATCY 9 cut(s) 43, 354, 456, 705, 1172, 1586, 1658, 1744, 2353
Bsu36I CCTNAGG 1 cut(s) 1971
BsuI GTATCC 4 cut(s) 384, 480, 912, 1689
BtgI CCRYGG 2 cut(s) 866, 1053
BtgZI GCGATG 1 cut(s) 1259
BtsCI GGATG 6 cut(s) 582, 957, 1374, 1800, 1987, 2600
BtsI GCAGTG 1 cut(s) 864
BtsIMutI CAGTG 2 cut(s) 683, 864
Cac8I GCNNGC 2 cut(s) 298, 955
CaiI CAGNNNCTG 2 cut(s) 130, 1142
CciI TCATGA 2 cut(s) 622, 2343
Cfr10I RCCGGY 1 cut(s) 794
CseI GACGC 3 cut(s) 95, 626, 2329
CsiI ACCWGGT 1 cut(s) 2659
Csp6I GTAC 6 cut(s) 1957, 2026, 2270, 2538, 2593, 2657
CspAI ACCGGT 1 cut(s) 794
CviQI GTAC 6 cut(s) 1957, 2026, 2270, 2538, 2593, 2657
DraI TTTAAA 1 cut(s) 1269
DraIII CACNNNGTG 1 cut(s) 1079
DrdI GACNNNNNNGTC 1 cut(s) 105
DseDI GACNNNNNNGTC 1 cut(s) 105
Eam1104I CTCTTC 5 cut(s) 432, 1398, 1512, 2493, 2627
EarI CTCTTC 5 cut(s) 432, 1398, 1512, 2493, 2627
EciI GGCGGA 2 cut(s) 2440, 2463
Eco105I TACGTA 1 cut(s) 2273
Eco130I CCWWGG 3 cut(s) 1007, 1053, 2470
Eco24I GRGCYC 1 cut(s) 1800
Eco31I GGTCTC 1 cut(s) 785
Eco32I GATATC 1 cut(s) 334
Eco57I CTGAAG 9 cut(s) 27, 312, 413, 704, 749, 990, 1044, 1323, 1692
Eco72I CACGTG 1 cut(s) 1921
Eco81I CCTNAGG 1 cut(s) 1971
EcoNI CCTNNNNNAGG 1 cut(s) 1970
EcoRII CCWGG 2 cut(s) 2019, 2659
EcoRV GATATC 1 cut(s) 334
EcoT14I CCWWGG 3 cut(s) 1007, 1053, 2470
EcoT38I GRGCYC 1 cut(s) 1800
ErhI CCWWGG 3 cut(s) 1007, 1053, 2470
Esp3I CGTCTC 1 cut(s) 280
FalI AAGNNNNNCTT 4 cut(s) 1017, 1049, 1262, 1294
FaqI GGGAC 1 cut(s) 1647
FauNDI CATATG 1 cut(s) 2214
FbaI TGATCA 2 cut(s) 2209, 2290
Fnu4HI GCNGC 2 cut(s) 890, 1347
FokI GGATG 6 cut(s) 589, 944, 1361, 1787, 1994, 2587
FriOI GRGCYC 1 cut(s) 1800
Fsp4HI GCNGC 2 cut(s) 890, 1347
GluI GCNGC 2 cut(s) 890, 1347
GsaI CCCAGC 1 cut(s) 576
GsuI CTGGAG 2 cut(s) 2042, 2502
HapII CCGG 3 cut(s) 634, 795, 2089
HgaI GACGC 3 cut(s) 95, 626, 2329
Hin1I GRCGYC 1 cut(s) 637
HincII GTYRAC 1 cut(s) 1225
HindII GTYRAC 1 cut(s) 1225
HindIII AAGCTT 2 cut(s) 35, 1871
HpaI GTTAAC 1 cut(s) 1225
HpaII CCGG 3 cut(s) 634, 795, 2089
HphI GGTGA 3 cut(s) 184, 1666, 2018
Hpy166II GTNNAC 3 cut(s) 122, 1225, 2017
Hpy188I TCNGA 9 cut(s) 64, 243, 331, 361, 461, 484, 1162, 1242, 2491
Hpy8I GTNNAC 3 cut(s) 122, 1225, 2017
HpyAV CCTTC 9 cut(s) 254, 902, 1346, 1760, 1791, 1860, 2510, 2563, 2638
HpyCH4III ACNGT 7 cut(s) 126, 479, 1138, 1211, 2054, 2256, 2717
HpyCH4IV ACGT 4 cut(s) 467, 1894, 1920, 2272
HpyF10VI GCNNNNNNNGC 6 cut(s) 34, 1103, 1270, 1599, 2118, 2445
HpySE526I ACGT 4 cut(s) 467, 1894, 1920, 2272
Hsp92I GRCGYC 1 cut(s) 637
Kpn2I TCCGGA 1 cut(s) 2088
KpnI GGTACC 2 cut(s) 1960, 2660
Ksp22I TGATCA 2 cut(s) 2209, 2290
KspAI GTTAAC 1 cut(s) 1225
LguI GCTCTTC 1 cut(s) 1398
LmnI GCTCC 4 cut(s) 505, 1829, 2091, 2611
Lsp1109I GCAGC 2 cut(s) 876, 1333
LweI GCATC 9 cut(s) 130, 136, 202, 366, 876, 966, 1282, 1932, 2514
MabI ACCWGGT 1 cut(s) 2659
MaeII ACGT 4 cut(s) 467, 1894, 1920, 2272
MaeIII GTNAC 5 cut(s) 638, 1069, 1776, 2059, 2717
MfeI CAATTG 1 cut(s) 782
MflI RGATCY 9 cut(s) 43, 354, 456, 705, 1172, 1586, 1658, 1744, 2353
MhlI GDGCHC 3 cut(s) 1800, 2441, 2470
MlyI GAGTC 2 cut(s) 61, 2580
MmeI TCCRAC 7 cut(s) 484, 860, 956, 959, 1722, 1977, 2710
MroI TCCGGA 1 cut(s) 2088
MroXI GAANNNNTTC 1 cut(s) 1914
MslI CAYNNNNRTG 3 cut(s) 162, 645, 2055
MspA1I CMGCKG 1 cut(s) 112
MspI CCGG 3 cut(s) 634, 795, 2089
MspR9I CCNGG 2 cut(s) 2021, 2661
MunI CAATTG 1 cut(s) 782
MvaI CCWGG 2 cut(s) 2021, 2661
MwoI GCNNNNNNNGC 6 cut(s) 34, 1103, 1270, 1599, 2118, 2445
NcoI CCATGG 1 cut(s) 1053
NdeI CATATG 1 cut(s) 2214
NlaIV GGNNCC 4 cut(s) 1911, 1958, 2355, 2658
NmuCI GTSAC 4 cut(s) 638, 1069, 2059, 2717
NspI RCATGY 4 cut(s) 284, 695, 926, 939
OliI CACNNNNGTG 1 cut(s) 2055
PagI TCATGA 2 cut(s) 622, 2343
PciI ACATGT 2 cut(s) 691, 935
PciSI GCTCTTC 1 cut(s) 1398
PdmI GAANNNNTTC 1 cut(s) 1914
PflMI CCANNNNNTGG 1 cut(s) 731
PinAI ACCGGT 1 cut(s) 794
PkrI GCNGC 2 cut(s) 891, 1348
PleI GAGTC 2 cut(s) 60, 2580
PmaCI CACGTG 1 cut(s) 1921
PmlI CACGTG 1 cut(s) 1921
PpsI GAGTC 2 cut(s) 60, 2580
Ppu21I YACGTR 3 cut(s) 1895, 1921, 2273
PscI ACATGT 2 cut(s) 691, 935
PshAI GACNNNNGTC 1 cut(s) 1209
Psp6I CCWGG 2 cut(s) 2019, 2659
PspCI CACGTG 1 cut(s) 1921
PspFI CCCAGC 1 cut(s) 572
PspGI CCWGG 2 cut(s) 2019, 2659
PspN4I GGNNCC 4 cut(s) 1911, 1958, 2355, 2658
PsrI GAACNNNNNNTAC 2 cut(s) 2009, 2041
PstI CTGCAG 1 cut(s) 1351
PstNI CAGNNNCTG 2 cut(s) 130, 1142
PsuI RGATCY 9 cut(s) 43, 354, 456, 705, 1172, 1586, 1658, 1744, 2353
PvuII CAGCTG 1 cut(s) 112
RsaI GTAC 6 cut(s) 1958, 2027, 2271, 2539, 2594, 2658
RsaNI GTAC 6 cut(s) 1957, 2026, 2270, 2538, 2593, 2657
RseI CAYNNNNRTG 3 cut(s) 162, 645, 2055
SapI GCTCTTC 1 cut(s) 1398
SatI GCNGC 2 cut(s) 890, 1347
ScaI AGTACT 1 cut(s) 2027
SchI GAGTC 2 cut(s) 61, 2580
ScrFI CCNGG 2 cut(s) 2021, 2661
SduI GDGCHC 3 cut(s) 1800, 2441, 2470
SexAI ACCWGGT 1 cut(s) 2659
SfaNI GCATC 9 cut(s) 130, 136, 202, 366, 876, 966, 1282, 1932, 2514
SfcI CTRYAG 3 cut(s) 567, 1347, 2723
SmiMI CAYNNNNRTG 3 cut(s) 162, 645, 2055
SmlI CTYRAG 4 cut(s) 29, 1807, 1816, 2588
SmoI CTYRAG 4 cut(s) 29, 1807, 1816, 2588
SnaBI TACGTA 1 cut(s) 2273
SsiI CCGC 4 cut(s) 582, 1861, 2425, 2448
SspI AATATT 3 cut(s) 739, 1168, 1233
StyD4I CCNGG 2 cut(s) 2019, 2659
StyI CCWWGG 3 cut(s) 1007, 1053, 2470
TaaI ACNGT 7 cut(s) 126, 479, 1138, 1211, 2054, 2256, 2717
TaiI ACGT 4 cut(s) 470, 1897, 1923, 2275
TaqI TCGA 9 cut(s) 55, 336, 816, 847, 901, 1673, 1680, 2166, 2522
TatI WGTACW 2 cut(s) 2025, 2592
TscAI CASTG 2 cut(s) 690, 864
TseFI GTSAC 4 cut(s) 638, 1069, 2059, 2717
TseI GCWGC 2 cut(s) 889, 1346
Tsp45I GTSAC 4 cut(s) 638, 1069, 2059, 2717
TspGWI ACGGA 5 cut(s) 323, 883, 1842, 2063, 2138
TspRI CASTG 2 cut(s) 690, 864
Van91I CCANNNNNTGG 1 cut(s) 731
XagI CCTNNNNNAGG 1 cut(s) 1970
XapI RAATTY 2 cut(s) 1420, 1457
XbaI TCTAGA 1 cut(s) 2368
XceI RCATGY 4 cut(s) 284, 695, 926, 939
XcmI CCANNNNNNNNNTGG 1 cut(s) 1999
XmaJI CCTAGG 2 cut(s) 1007, 2470
XmnI GAANNNNTTC 1 cut(s) 1914
ZrmI AGTACT 1 cut(s) 2027
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.