disease resistance
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 76 - 124 | 6.1e-08 | PPR repeat family |
| PPR_2 | PF13041 | 176 - 225 | 7.9e-14 | PPR repeat family |
| PPR_1 | PF12854 | 176 - 205 | 6.8e-06 | PPR repeat |
| PPR | PF01535 | 179 - 209 | 5.5e-10 | PPR repeat |
| PPR_2 | PF13041 | 277 - 325 | 4.9e-11 | PPR repeat family |
| PPR | PF01535 | 280 - 310 | 3.9e-06 | PPR repeat |
| E_motif | PF20431 | 395 - 457 | 2e-18 | E motif |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 185 |
| AccI | GTMKAC | 1 cut(s) | 845 |
| AccII | CGCG | 1 cut(s) | 671 |
| AccIII | TCCGGA | 2 cut(s) | 116, 195 |
| AciI | CCGC | 1 cut(s) | 480 |
| AcoI | YGGCCR | 1 cut(s) | 276 |
| AcsI | RAATTY | 3 cut(s) | 544, 661, 1391 |
| AcvI | CACGTG | 1 cut(s) | 500 |
| AfaI | GTAC | 5 cut(s) | 410, 470, 1031, 1260, 1498 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 63, 923, 1152, 1468 |
| AgsI | TTSAA | 8 cut(s) | 629, 661, 815, 932, 1228, 1365, 1370, 1376 |
| AjnI | CCWGG | 3 cut(s) | 278, 603, 1351 |
| AluBI | AGCT | 8 cut(s) | 163, 387, 493, 869, 968, 1172, 1198, 1222 |
| AluI | AGCT | 8 cut(s) | 163, 387, 493, 869, 968, 1172, 1198, 1222 |
| Alw21I | GWGCWC | 4 cut(s) | 51, 64, 357, 687 |
| Alw26I | GTCTC | 1 cut(s) | 372 |
| Alw44I | GTGCAC | 1 cut(s) | 60 |
| Ama87I | CYCGRG | 1 cut(s) | 686 |
| Aor13HI | TCCGGA | 2 cut(s) | 116, 195 |
| AoxI | GGCC | 5 cut(s) | 13, 85, 276, 294, 326 |
| ApaLI | GTGCAC | 1 cut(s) | 60 |
| ApeKI | GCWGC | 1 cut(s) | 965 |
| ApoI | RAATTY | 3 cut(s) | 544, 661, 1391 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 607, 639 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 203 |
| AspLEI | GCGC | 4 cut(s) | 76, 568, 671, 760 |
| AsuC2I | CCSGG | 2 cut(s) | 797, 1090 |
| AsuHPI | GGTGA | 1 cut(s) | 1415 |
| AvaI | CYCGRG | 1 cut(s) | 686 |
| BaeGI | GKGCMC | 1 cut(s) | 64 |
| BalI | TGGCCA | 1 cut(s) | 278 |
| BanII | GRGCYC | 1 cut(s) | 1162 |
| BbrPI | CACGTG | 1 cut(s) | 500 |
| Bbv12I | GWGCWC | 4 cut(s) | 51, 64, 357, 687 |
| BbvI | GCAGC | 1 cut(s) | 977 |
| BccI | CCATC | 4 cut(s) | 506, 511, 734, 1241 |
| BciT130I | CCWGG | 3 cut(s) | 280, 605, 1353 |
| BciVI | GTATCC | 1 cut(s) | 1173 |
| BcnI | CCSGG | 2 cut(s) | 797, 1090 |
| BcoDI | GTCTC | 1 cut(s) | 372 |
| BfaI | CTAG | 2 cut(s) | 918, 1445 |
| BfmI | CTRYAG | 1 cut(s) | 1357 |
| BfuI | GTATCC | 1 cut(s) | 1173 |
| BisI | GCNGC | 2 cut(s) | 481, 966 |
| BlpI | GCTNAGC | 1 cut(s) | 489 |
| BlsI | GCNGC | 2 cut(s) | 482, 967 |
| Bme1390I | CCNGG | 5 cut(s) | 280, 605, 797, 1090, 1353 |
| BmeT110I | CYCGRG | 1 cut(s) | 686 |
| BmrFI | CCNGG | 5 cut(s) | 280, 605, 797, 1090, 1353 |
| BmsI | GCATC | 7 cut(s) | 304, 475, 577, 600, 903, 1052, 1132 |
| BoxI | GACNNNNGTC | 2 cut(s) | 213, 344 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 489 |
| BpuEI | CTTGAG | 1 cut(s) | 403 |
| BpuMI | CCSGG | 2 cut(s) | 797, 1090 |
| BsaAI | YACGTR | 3 cut(s) | 500, 1258, 1465 |
| BsaBI | GATNNNNATC | 1 cut(s) | 723 |
| BsaJI | CCNNGG | 1 cut(s) | 279 |
| BsaWI | WCCGGW | 3 cut(s) | 116, 195, 631 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 972, 1002, 1333, 1363 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 63, 923, 1152, 1468 |
| Bse3DI | GCAATG | 2 cut(s) | 457, 1329 |
| Bse8I | GATNNNNATC | 1 cut(s) | 723 |
| BseAI | TCCGGA | 2 cut(s) | 116, 195 |
| BseBI | CCWGG | 3 cut(s) | 280, 605, 1353 |
| BseDI | CCNNGG | 1 cut(s) | 279 |
| BseGI | GGATG | 5 cut(s) | 337, 522, 601, 640, 1067 |
| BseJI | GATNNNNATC | 1 cut(s) | 723 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 63, 923, 1152, 1468 |
| BseMI | GCAATG | 2 cut(s) | 457, 1329 |
| BseMII | CTCAG | 4 cut(s) | 91, 480, 900, 1058 |
| BseRI | GAGGAG | 1 cut(s) | 1124 |
| BseSI | GKGCMC | 1 cut(s) | 64 |
| BseXI | GCAGC | 1 cut(s) | 977 |
| BsgI | GTGCAG | 1 cut(s) | 1328 |
| Bsh1236I | CGCG | 1 cut(s) | 671 |
| BshFI | GGCC | 5 cut(s) | 15, 87, 278, 296, 328 |
| BsiHKAI | GWGCWC | 4 cut(s) | 51, 64, 357, 687 |
| BsiHKCI | CYCGRG | 1 cut(s) | 686 |
| BsiSI | CCGG | 6 cut(s) | 117, 196, 329, 632, 796, 1089 |
| BslFI | GGGAC | 3 cut(s) | 23, 201, 239 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 63, 923, 1152, 1468 |
| BsmAI | GTCTC | 1 cut(s) | 372 |
| BsmFI | GGGAC | 3 cut(s) | 23, 201, 239 |
| BsmI | GAATGC | 3 cut(s) | 760, 927, 1306 |
| BsnI | GGCC | 5 cut(s) | 15, 87, 278, 296, 328 |
| BsoBI | CYCGRG | 1 cut(s) | 686 |
| Bsp1286I | GDGCHC | 5 cut(s) | 51, 64, 357, 687, 1162 |
| Bsp13I | TCCGGA | 2 cut(s) | 116, 195 |
| Bsp1407I | TGTACA | 1 cut(s) | 1029 |
| Bsp143I | GATC | 1 cut(s) | 1452 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 489 |
| BspACI | CCGC | 1 cut(s) | 480 |
| BspANI | GGCC | 5 cut(s) | 15, 87, 278, 296, 328 |
| BspCNI | CTCAG | 4 cut(s) | 90, 481, 901, 1057 |
| BspEI | TCCGGA | 2 cut(s) | 116, 195 |
| BspFNI | CGCG | 1 cut(s) | 671 |
| BspHI | TCATGA | 3 cut(s) | 156, 1387, 1455 |
| BsrDI | GCAATG | 2 cut(s) | 457, 1329 |
| BsrGI | TGTACA | 1 cut(s) | 1029 |
| BssECI | CCNNGG | 1 cut(s) | 279 |
| BssMI | GATC | 1 cut(s) | 1452 |
| BssNAI | GTATAC | 1 cut(s) | 846 |
| Bst1107I | GTATAC | 1 cut(s) | 846 |
| Bst2UI | CCWGG | 3 cut(s) | 280, 605, 1353 |
| Bst4CI | ACNGT | 5 cut(s) | 37, 66, 850, 1027, 1210 |
| BstAUI | TGTACA | 1 cut(s) | 1029 |
| BstBAI | YACGTR | 3 cut(s) | 500, 1258, 1465 |
| BstC8I | GCNNGC | 6 cut(s) | 89, 364, 495, 708, 1174, 1200 |
| BstDEI | CTNAG | 5 cut(s) | 77, 489, 909, 1037, 1044 |
| BstF5I | GGATG | 5 cut(s) | 337, 522, 601, 640, 1067 |
| BstFNI | CGCG | 1 cut(s) | 671 |
| BstHHI | GCGC | 4 cut(s) | 76, 568, 671, 760 |
| BstKTI | GATC | 1 cut(s) | 1455 |
| BstMAI | GTCTC | 1 cut(s) | 372 |
| BstMBI | GATC | 1 cut(s) | 1452 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 494, 1135 |
| BstNI | CCWGG | 3 cut(s) | 280, 605, 1353 |
| BstNSI | RCATGY | 2 cut(s) | 710, 1129 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 213, 344 |
| BstSCI | CCNGG | 5 cut(s) | 278, 603, 795, 1088, 1351 |
| BstSFI | CTRYAG | 1 cut(s) | 1357 |
| BstSLI | GKGCMC | 1 cut(s) | 64 |
| BstSNI | TACGTA | 1 cut(s) | 1258 |
| BstUI | CGCG | 1 cut(s) | 671 |
| BstV1I | GCAGC | 1 cut(s) | 977 |
| BstZ17I | GTATAC | 1 cut(s) | 846 |
| BsuI | GTATCC | 1 cut(s) | 1173 |
| BsuRI | GGCC | 5 cut(s) | 15, 87, 278, 296, 328 |
| BtgZI | GCGATG | 1 cut(s) | 498 |
| BtsCI | GGATG | 5 cut(s) | 337, 522, 601, 640, 1067 |
| BtsI | GCAGTG | 1 cut(s) | 1311 |
| BtsIMutI | CAGTG | 2 cut(s) | 33, 1311 |
| Cac8I | GCNNGC | 6 cut(s) | 89, 364, 495, 708, 1174, 1200 |
| CciI | TCATGA | 3 cut(s) | 156, 1387, 1455 |
| CfoI | GCGC | 4 cut(s) | 76, 568, 671, 760 |
| CseI | GACGC | 1 cut(s) | 130 |
| Csp6I | GTAC | 5 cut(s) | 409, 469, 1030, 1259, 1497 |
| CviQI | GTAC | 5 cut(s) | 409, 469, 1030, 1259, 1497 |
| DdeI | CTNAG | 5 cut(s) | 77, 489, 909, 1037, 1044 |
| DpnI | GATC | 1 cut(s) | 1454 |
| DpnII | GATC | 1 cut(s) | 1452 |
| EaeI | YGGCCR | 1 cut(s) | 276 |
| Eco105I | TACGTA | 1 cut(s) | 1258 |
| Eco147I | AGGCCT | 1 cut(s) | 296 |
| Eco24I | GRGCYC | 1 cut(s) | 1162 |
| Eco32I | GATATC | 1 cut(s) | 555 |
| Eco72I | CACGTG | 1 cut(s) | 500 |
| Eco88I | CYCGRG | 1 cut(s) | 686 |
| EcoRI | GAATTC | 3 cut(s) | 544, 661, 1391 |
| EcoRII | CCWGG | 3 cut(s) | 278, 603, 1351 |
| EcoRV | GATATC | 1 cut(s) | 555 |
| EcoT22I | ATGCAT | 2 cut(s) | 457, 1067 |
| EcoT38I | GRGCYC | 1 cut(s) | 1162 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1182, 1214 |
| FaqI | GGGAC | 3 cut(s) | 23, 201, 239 |
| FblI | GTMKAC | 1 cut(s) | 845 |
| Fnu4HI | GCNGC | 2 cut(s) | 481, 966 |
| FokI | GGATG | 5 cut(s) | 344, 529, 608, 647, 1074 |
| FriOI | GRGCYC | 1 cut(s) | 1162 |
| Fsp4HI | GCNGC | 2 cut(s) | 481, 966 |
| FspBI | CTAG | 2 cut(s) | 918, 1445 |
| GlaI | GCGC | 4 cut(s) | 75, 567, 670, 759 |
| GluI | GCNGC | 2 cut(s) | 481, 966 |
| HaeIII | GGCC | 5 cut(s) | 15, 87, 278, 296, 328 |
| HapII | CCGG | 6 cut(s) | 117, 196, 329, 632, 796, 1089 |
| HgaI | GACGC | 1 cut(s) | 130 |
| HhaI | GCGC | 4 cut(s) | 76, 568, 671, 760 |
| Hin6I | GCGC | 4 cut(s) | 74, 566, 669, 758 |
| HinP1I | GCGC | 4 cut(s) | 74, 566, 669, 758 |
| HincII | GTYRAC | 3 cut(s) | 145, 1023, 1072 |
| HindII | GTYRAC | 3 cut(s) | 145, 1023, 1072 |
| HinfI | GANTC | 4 cut(s) | 120, 618, 673, 724 |
| HpaII | CCGG | 6 cut(s) | 117, 196, 329, 632, 796, 1089 |
| HphI | GGTGA | 1 cut(s) | 1415 |
| Hpy166II | GTNNAC | 9 cut(s) | 62, 97, 145, 430, 846, 1023, 1030, 1072, 1427 |
| Hpy188I | TCNGA | 6 cut(s) | 80, 729, 910, 1002, 1047, 1397 |
| Hpy188III | TCNNGA | 8 cut(s) | 23, 117, 157, 196, 626, 751, 1388, 1456 |
| Hpy8I | GTNNAC | 9 cut(s) | 62, 97, 145, 430, 846, 1023, 1030, 1072, 1427 |
| Hpy99I | CGWCG | 1 cut(s) | 212 |
| HpyAV | CCTTC | 8 cut(s) | 29, 77, 193, 278, 307, 1222, 1311, 1370 |
| HpyCH4III | ACNGT | 5 cut(s) | 37, 66, 850, 1027, 1210 |
| HpyCH4IV | ACGT | 4 cut(s) | 192, 499, 1257, 1464 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 494, 1135 |
| HpyF3I | CTNAG | 5 cut(s) | 77, 489, 909, 1037, 1044 |
| HpySE526I | ACGT | 4 cut(s) | 192, 499, 1257, 1464 |
| HspAI | GCGC | 4 cut(s) | 74, 566, 669, 758 |
| Kpn2I | TCCGGA | 2 cut(s) | 116, 195 |
| Kzo9I | GATC | 1 cut(s) | 1452 |
| LmnI | GCTCC | 2 cut(s) | 9, 1169 |
| Lsp1109I | GCAGC | 1 cut(s) | 977 |
| LweI | GCATC | 7 cut(s) | 304, 475, 577, 600, 903, 1052, 1132 |
| MaeI | CTAG | 2 cut(s) | 918, 1445 |
| MaeII | ACGT | 4 cut(s) | 192, 499, 1257, 1464 |
| MaeIII | GTNAC | 3 cut(s) | 640, 943, 1403 |
| MalI | GATC | 1 cut(s) | 1454 |
| MboI | GATC | 1 cut(s) | 1452 |
| MboII | GAAGA | 2 cut(s) | 409, 1272 |
| MfeI | CAATTG | 2 cut(s) | 1131, 1365 |
| MhlI | GDGCHC | 5 cut(s) | 51, 64, 357, 687, 1162 |
| MlsI | TGGCCA | 1 cut(s) | 278 |
| MluCI | AATT | 8 cut(s) | 187, 371, 544, 661, 1131, 1365, 1391, 1439 |
| MluNI | TGGCCA | 1 cut(s) | 278 |
| MlyI | GAGTC | 1 cut(s) | 114 |
| MmeI | TCCRAC | 2 cut(s) | 841, 1293 |
| Mox20I | TGGCCA | 1 cut(s) | 278 |
| Mph1103I | ATGCAT | 2 cut(s) | 457, 1067 |
| MroI | TCCGGA | 2 cut(s) | 116, 195 |
| MroXI | GAANNNNTTC | 1 cut(s) | 203 |
| MscI | TGGCCA | 1 cut(s) | 278 |
| MseI | TTAA | 4 cut(s) | 264, 462, 1094, 1119 |
| MslI | CAYNNNNRTG | 3 cut(s) | 102, 155, 711 |
| Msp20I | TGGCCA | 1 cut(s) | 278 |
| MspI | CCGG | 6 cut(s) | 117, 196, 329, 632, 796, 1089 |
| MspR9I | CCNGG | 5 cut(s) | 280, 605, 797, 1090, 1353 |
| MunI | CAATTG | 2 cut(s) | 1131, 1365 |
| Mva1269I | GAATGC | 3 cut(s) | 760, 927, 1306 |
| MvaI | CCWGG | 3 cut(s) | 280, 605, 1353 |
| MvnI | CGCG | 1 cut(s) | 671 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 494, 1135 |
| NciI | CCSGG | 2 cut(s) | 797, 1090 |
| NdeII | GATC | 1 cut(s) | 1452 |
| NmuCI | GTSAC | 1 cut(s) | 1403 |
| NsiI | ATGCAT | 2 cut(s) | 457, 1067 |
| NspI | RCATGY | 2 cut(s) | 710, 1129 |
| PaeI | GCATGC | 1 cut(s) | 710 |
| PaeR7I | CTCGAG | 1 cut(s) | 686 |
| PagI | TCATGA | 3 cut(s) | 156, 1387, 1455 |
| PceI | AGGCCT | 1 cut(s) | 296 |
| PctI | GAATGC | 3 cut(s) | 760, 927, 1306 |
| PdmI | GAANNNNTTC | 1 cut(s) | 203 |
| PfeI | GAWTC | 3 cut(s) | 618, 673, 724 |
| PfoI | TCCNGGA | 1 cut(s) | 603 |
| PkrI | GCNGC | 2 cut(s) | 482, 967 |
| PleI | GAGTC | 1 cut(s) | 114 |
| PmaCI | CACGTG | 1 cut(s) | 500 |
| PmlI | CACGTG | 1 cut(s) | 500 |
| PpsI | GAGTC | 1 cut(s) | 114 |
| Ppu21I | YACGTR | 3 cut(s) | 500, 1258, 1465 |
| PshAI | GACNNNNGTC | 2 cut(s) | 213, 344 |
| PsiI | TTATAA | 1 cut(s) | 185 |
| Psp6I | CCWGG | 3 cut(s) | 278, 603, 1351 |
| PspCI | CACGTG | 1 cut(s) | 500 |
| PspGI | CCWGG | 3 cut(s) | 278, 603, 1351 |
| PspXI | VCTCGAGB | 1 cut(s) | 686 |
| RsaI | GTAC | 5 cut(s) | 410, 470, 1031, 1260, 1498 |
| RsaNI | GTAC | 5 cut(s) | 409, 469, 1030, 1259, 1497 |
| RseI | CAYNNNNRTG | 3 cut(s) | 102, 155, 711 |
| SaqAI | TTAA | 4 cut(s) | 264, 462, 1094, 1119 |
| SatI | GCNGC | 2 cut(s) | 481, 966 |
| Sau3AI | GATC | 1 cut(s) | 1452 |
| SchI | GAGTC | 1 cut(s) | 114 |
| ScrFI | CCNGG | 5 cut(s) | 280, 605, 797, 1090, 1353 |
| SduI | GDGCHC | 5 cut(s) | 51, 64, 357, 687, 1162 |
| SfaNI | GCATC | 7 cut(s) | 304, 475, 577, 600, 903, 1052, 1132 |
| SfcI | CTRYAG | 1 cut(s) | 1357 |
| Sfr274I | CTCGAG | 1 cut(s) | 686 |
| SlaI | CTCGAG | 1 cut(s) | 686 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 102, 155, 711 |
| SmlI | CTYRAG | 2 cut(s) | 382, 686 |
| SmoI | CTYRAG | 2 cut(s) | 382, 686 |
| SnaBI | TACGTA | 1 cut(s) | 1258 |
| SphI | GCATGC | 1 cut(s) | 710 |
| Sse9I | AATT | 8 cut(s) | 187, 371, 544, 661, 1131, 1365, 1391, 1439 |
| SseBI | AGGCCT | 1 cut(s) | 296 |
| SsiI | CCGC | 1 cut(s) | 480 |
| SspMI | CTAG | 2 cut(s) | 918, 1445 |
| StuI | AGGCCT | 1 cut(s) | 296 |
| StyD4I | CCNGG | 5 cut(s) | 278, 603, 795, 1088, 1351 |
| TaaI | ACNGT | 5 cut(s) | 37, 66, 850, 1027, 1210 |
| TaiI | ACGT | 4 cut(s) | 195, 502, 1260, 1467 |
| TaqI | TCGA | 2 cut(s) | 207, 687 |
| TaqII | GACCGA | 1 cut(s) | 611 |
| TasI | AATT | 8 cut(s) | 187, 371, 544, 661, 1131, 1365, 1391, 1439 |
| TatI | WGTACW | 3 cut(s) | 468, 1029, 1496 |
| TauI | GCSGC | 1 cut(s) | 483 |
| TfiI | GAWTC | 3 cut(s) | 618, 673, 724 |
| Tru1I | TTAA | 4 cut(s) | 264, 462, 1094, 1119 |
| Tru9I | TTAA | 4 cut(s) | 264, 462, 1094, 1119 |
| TscAI | CASTG | 2 cut(s) | 40, 1311 |
| TseFI | GTSAC | 1 cut(s) | 1403 |
| TseI | GCWGC | 1 cut(s) | 965 |
| Tsp45I | GTSAC | 1 cut(s) | 1403 |
| TspDTI | ATGAA | 6 cut(s) | 173, 836, 1232, 1340, 1376, 1404 |
| TspRI | CASTG | 2 cut(s) | 40, 1311 |
| VneI | GTGCAC | 1 cut(s) | 60 |
| XapI | RAATTY | 3 cut(s) | 544, 661, 1391 |
| XceI | RCATGY | 2 cut(s) | 710, 1129 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 286 |
| XhoI | CTCGAG | 1 cut(s) | 686 |
| XmiI | GTMKAC | 1 cut(s) | 845 |
| XmnI | GAANNNNTTC | 1 cut(s) | 203 |
| XspI | CTAG | 2 cut(s) | 918, 1445 |
| Zsp2I | ATGCAT | 2 cut(s) | 457, 1067 |