Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017299.1

Orthogroup ID

OG0000069

Physical Location & Seq

Genomic Coordinates Reverse (-)

1141 .. 6123

Gene Structure 4983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017299.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2433 bp

atggttgatgagtgcgacacagtacttggaaatgttaatgtatacataatgagaggcacaaatgtccttgaaagagaaaagaccagtcaggagtgtggtgtttcaggtgtcttggccttgagttatgatgacttaaaactttgctttctgtatttagcccaatattctgaggatcatgagatacaggtaacaagattgactaaattatggattgcagaagggtttataccttcaacatcagaaatacatggttcaattgaattaatggaagatgtatcatatggttgcctaactgaactggtgcaaagatctatgtatcaagttggaaaatatggttttagtgggaaggtgaaaagttgccgtctccatgatctgatgcgggacttgtgcttgcaaaaggcaaaagaggagaactttcttgctattgttaacttttctgtgggtccggtatctaatgcagcactgattggtaaggttcgaagacttgccctctacttggatgaaaatgttaaatatgagttcagtagtgagaatggaagagatggccacattaggtctctattatactttgccccagagtggttctacccaaagtggaacaaaagaatagtacgatcagtattcaatgacttcaatttgatcagagccttgaagtttgaaaatatatgtagggagtttgagttaccaaagacgattgggaatcaagtccacctaaggttcctgagtctgaagaatagtgcatttcgtgggttgccatcatctgtatctaatctggtacttttgcaaactctagatctgcggggtctaattataggtcatggatatcgttttgggattacgtgggacagggataccaaaatcagaaatgtgttttggagtatggagcaactgaggcatttgtatttaccttttcggtacagtgtcagtggaaaactgtcatttgcaaggttgtgcaatttgcagacgttggtcaatgttagaattgagaaatgtgatttgaatggtcttgttcaattaagcaatctgaagaaactacgcacaaggccgttaccgtatgggtcggcagatcgagcaaaattgaaggatgacccgattgaaatactggagaagctgcccaacttaagggtgctttaccttgatagtctttctttcgaatcagaaacaatggttttctcccaaggaggctttcctcatctggaatttcttacgcttagatggttggttgatttgaaggaagaagccatgcctagtcttcagagattacgcattgtatggtgccgagaattgcgggcagttccagatgggcttcaggagattactaccctcaaggaattaacaaatgacgggatgcccagtagattctgcagtaggaatttccagattagctgcacgagtgtacttatgatggccgaatcctatacggccccgcctttaattctccattgcctctctttcttcttccaccgcaacagcagctcagtgtttcttcccccagtccctcgccgctgtacacggaccagtcacacaggaaagatgattttgacagaagatgaaattacgaggctctatagaaagacagtgatgcaaatgctgaaagatcaggattatctaattgttgatcatgatctcaacatgacaatgtcgcagtttaaaaacaaacatggagagaacatgaaaagggaggaccttactatcaatagaaggaagagaggtgacgagtctgatcagatttatgtgtttttccctgacgaaccaaaagttgggttcaagacaatgaagagttacattacacgcatgaatcaggagaatgtgattagagcaatcttagttgctcaacaaaatctgactccttttgcaaagacctccatttgtgagatgggttcaaagtaccacttaatgaagagttacattacacgcatgaatcaggagaatgtgattagagcaatcttagttgctcaacaaaatctgactccttttacaaagacctccatttgtgatatgggttcaaagtaccacttggagattttccaggaggcagaattgttggtaaatattaaagagcatgttctagttcctgagcatcgggttcttacaaatgaggaaaaaaagactttgctggagaggtatactaaacacagcccacaacccggaaagcctaatgaaatgaaatttaaggcaaacggacgcgcgcagcgacatggtgttggtgatggcaatgcttggctaggttccggtagagctcagggcacgccaccgacgtcgattggagacggaggatatgaaccagtgaggacggtgggcacgtcgtccaccgccgagccagctatgcatattggtatgagatgttggttgttagctagggtggatttgggcgaggagtggactgggatgggtagaagagttggaggagaaatgtttgtcgtttatttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0002230 GO:0002238 GO:0002239 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009615 GO:0009620 GO:0009626 GO:0009628 GO:0009637 GO:0009642 GO:0009646 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0012501 GO:0014070 GO:0016020 GO:0023052 GO:0030054 GO:0031347 GO:0032101 GO:0032870 GO:0033554 GO:0034050 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0043207 GO:0043900 GO:0044464 GO:0045087 GO:0046677 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071944 GO:0080134 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

810

Amino Acids

93.07

Weight (kDa)

8.95

Isoelectric Point (pI)

42.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G50180 AT1G53350 AT1G58390 AT1G58390 AT1G58400 AT1G58400 AT1G58400 AT1G58410 AT1G58410 AT1G58410 AT1G58410 AT1G58602 AT1G58602 AT1G58807 AT1G58807 AT1G58848 AT1G58848 AT1G59124 AT1G59124 AT1G59218 AT1G59218 AT1G59218 AT1G59620 AT1G59780 AT1G59780 AT5G35450 AT5G35450 AT5G43470 AT5G43470 AT5G43470 AT5G43470 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620
fragaria_vesca	FvH4_4g04072 FvH4_4g22931 FvH4_4g22931 FvH4_4g22940 FvH4_6g49940 FvH4_6g49940 FvH4_7g08100 FvH4_7g08870 FvH4_7g08870 FvH4_7g09280 FvH4_7g09290 FvH4_7g15190 FvH4_7g15200 FvH4_7g15240 FvH4_7g15240 FvH4_7g33440
malus_domestica	MD00G1174600.v1.1 MD01G1113700.v1.1 MD03G1071300.v1.1 MD04G1041500.v1.1 MD04G1238000.v1.1 MD07G1029000.v1.1 MD07G1092100.v1.1 MD07G1092300.v1.1 MD07G1092600.v1.1 MD12G1256300.v1.1 MD13G1128200.v1.1 MD13G1128400.v1.1 MD17G1268000.v1.1
prunus_persica	Prupe.1G041300_v2.0.a1 Prupe.1G041300_v2.0.a1 Prupe.1G042900_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043600_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G046700_v2.0.a1 Prupe.1G047700_v2.0.a1 Prupe.1G047900_v2.0.a1 Prupe.1G048000_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G049900_v2.0.a1 Prupe.1G051500_v2.0.a1 Prupe.1G051800_v2.0.a1 Prupe.1G051900_v2.0.a1 Prupe.1G052200_v2.0.a1 Prupe.1G194900_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117300_v2.0.a1 Prupe.2G117400_v2.0.a1 Prupe.2G117500_v2.0.a1 Prupe.2G117700_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G119900_v2.0.a1
pyrus_communis	pycom03g05750 pycom04g21110 pycom07g07530 pycom07g07590 pycom13g11110 pycom13g11140 pycom13g11160 pycom13g11170 pycom17g26680
rosa_chinensis	RchiOBHm_Chr1g0341231 RchiOBHm_Chr1g0344091 RchiOBHm_Chr1g0344161 RchiOBHm_Chr1g0345001 RchiOBHm_Chr1g0345351 RchiOBHm_Chr1g0345371 RchiOBHm_Chr1g0345391 RchiOBHm_Chr1g0345531 RchiOBHm_Chr1g0345551 RchiOBHm_Chr1g0345571 RchiOBHm_Chr1g0345581 RchiOBHm_Chr1g0345661 RchiOBHm_Chr1g0345691 RchiOBHm_Chr1g0345761 RchiOBHm_Chr1g0345791 RchiOBHm_Chr1g0345821 RchiOBHm_Chr1g0345911 RchiOBHm_Chr1g0345941 RchiOBHm_Chr1g0357611 RchiOBHm_Chr1g0357911 RchiOBHm_Chr1g0357921 RchiOBHm_Chr1g0357931 RchiOBHm_Chr1g0357971 RchiOBHm_Chr1g0358121 RchiOBHm_Chr1g0383491 RchiOBHm_Chr1g0383511 RchiOBHm_Chr1g0383521 RchiOBHm_Chr3g0480581 RchiOBHm_Chr4g0394341 RchiOBHm_Chr4g0394361 RchiOBHm_Chr4g0394411 RchiOBHm_Chr4g0394441 RchiOBHm_Chr4g0407681 RchiOBHm_Chr4g0429191 RchiOBHm_Chr4g0429201 RchiOBHm_Chr4g0429211 RchiOBHm_Chr4g0429221 RchiOBHm_Chr6g0265091
rosa_laevigata	RLG00000007088 RLG00000008700 RLG00000009190 RLG00000009702 RLG00000014210 RLG00000028829 RLG00000028833 RLG00000028837 RLG00000028838 RLG00000028921 RLG00000028926
rosa_multiflora	Rmu_co8366955.1_g000001 Rmu_co8394205.1_g000001 Rmu_sc0000019.1_g000001 Rmu_sc0000054.1_g000031 Rmu_sc0000054.1_g000033 Rmu_sc0000200.1_g000002 Rmu_sc0000200.1_g000007 Rmu_sc0000200.1_g000018 Rmu_sc0000200.1_g000020 Rmu_sc0000200.1_g000021 Rmu_sc0000251.1_g000012 Rmu_sc0000251.1_g000015 Rmu_sc0000251.1_g000028 Rmu_sc0000253.1_g000015 Rmu_sc0000255.1_g000045 Rmu_sc0000255.1_g000046 Rmu_sc0001292.1_g000013 Rmu_sc0001292.1_g000018 Rmu_sc0001292.1_g000028 Rmu_sc0001292.1_g000029 Rmu_sc0001349.1_g000006 Rmu_sc0001349.1_g000014 Rmu_sc0001582.1_g000006 Rmu_sc0001582.1_g000018 Rmu_sc0001582.1_g000020 Rmu_sc0001692.1_g000007 Rmu_sc0001692.1_g000024 Rmu_sc0001692.1_g000026 Rmu_sc0001692.1_g000029 Rmu_sc0001692.1_g000030 Rmu_sc0001835.1_g000006 Rmu_sc0001835.1_g000010 Rmu_sc0002071.1_g000005 Rmu_sc0002276.1_g000002 Rmu_sc0002276.1_g000009 Rmu_sc0002329.1_g000018 Rmu_sc0002329.1_g000023 Rmu_sc0002329.1_g000025 Rmu_sc0002523.1_g000005 Rmu_sc0003573.1_g000005 Rmu_sc0003573.1_g000006 Rmu_sc0004099.1_g000021 Rmu_sc0005812.1_g000009 Rmu_sc0006271.1_g000002 Rmu_sc0006287.1_g000038 Rmu_sc0006439.1_g000008 Rmu_sc0007456.1_g000004 Rmu_sc0007581.1_g000009 Rmu_sc0007849.1_g000014 Rmu_sc0008115.1_g000012 Rmu_sc0010521.1_g000004 Rmu_sc0012471.1_g000017 Rmu_sc0014762.1_g000001 Rmu_sc0015150.1_g000003 Rmu_sc0017221.1_g000001 Rmu_sc0017299.1_g000001 Rmu_sc0017299.1_g000002 Rmu_sc0021457.1_g000001 Rmu_sc0022067.1_g000001 Rmu_sc0033275.1_g000001 Rmu_ssc0000245.1_g000012 Rmu_ssc0000359.1_g000035 Rmu_ssc0000359.1_g000067 Rmu_ssc0000359.1_g000072 Rmu_ssc0000434.1_g000005 Rmu_ssc0000434.1_g000007
rosa_roxburghii	Rroxscaffold_4G00298420 Rroxscaffold_4G00298720 Rroxscaffold_4G00308990 Rroxscaffold_4G00309000 Rroxscaffold_4G00309010 Rroxscaffold_4G00309050 Rroxscaffold_4G00309070 Rroxscaffold_4G00309100 Rroxscaffold_4G00310030 Rroxscaffold_4G00310050 Rroxscaffold_4G00311880 Rroxscaffold_5G00339420 Rroxscaffold_5G00339450 Rroxscaffold_5G00344880 Rroxscaffold_5G00352270 Rroxscaffold_5G00362240 Rroxscaffold_5G00370840 Rroxscaffold_7G00202970
rosa_rugosa	Rorug01G0159100.1 Rorug01G0159200.1 Rorug01G0171700 Rorug01G0171900 Rorug01G0172000 Rorug01G0191700 Rorug01G0191800 Rorug01G0256900 Rorug01G0257000 Rorug01G0257100 Rorug03G0198000 Rorug03G0366300.1 Rorug03G0366400.1 Rorug03G0366500.1 Rorug04G0081200 Rorug04G0081200 Rorug04G0081200 Rorug04G0233700 Rorug04G0233800 Rorug04G0233800 Rorug06G0013300
rosa_samantha	Rh1CG138800 Rh1CG161300 Rh1CG173800 Rh1CG179800 Rh1CG180100 Rh1CG180500 Rh1CG180800 Rh1CG180900 Rh1CG194100 Rh1DG205100 Rh3AG236300 Rh4AG052000 Rh4AG052100 Rh4AG145900 Rh4AG289700 Rh4AG289800 Rh6AG136800 Rh6AG137300 Rh6BG133600 Rh6CG132000 Rh6CG134000 Rh6DG119300
rosa_wichuraiana	Rw0G003420 Rw1G015500 Rw1G016110 Rw1G016180 Rw1G016210 Rw1G016230 Rw1G016280 Rw1G016440 Rw1G016450 Rw1G016460 Rw1G016480 Rw1G017490 Rw1G024140 Rw1G024160 Rw3G022530 Rw4G004140 Rw4G004190 Rw4G011850 Rw6G011800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	2261
AccB1I	GGYRCC	1 cut(s)	1275
AccB7I	CCANNNNNTGG	1 cut(s)	1760
AccI	GTMKAC	2 cut(s)	42, 2126
AccII	CGCG	2 cut(s)	2187, 2189
AciI	CCGC	7 cut(s)	379, 799, 1288, 1427, 1465, 1504, 2313
AclWI	GGATC	1 cut(s)	180
AcoI	YGGCCR	2 cut(s)	544, 1407
AcsI	RAATTY	3 cut(s)	1199, 1372, 2168
AcuI	CTGAAG	4 cut(s)	749, 1046, 1238, 1292
AcyI	GRCGYC	1 cut(s)	2258
AfaI	GTAC	8 cut(s)	24, 612, 777, 917, 1398, 1510, 1889, 2012
AfiI	CCNNNNNNNGG	5 cut(s)	496, 579, 1122, 1760, 2147
AflII	CTTAAG	1 cut(s)	1120
AjiI	CACGTC	1 cut(s)	2304
AjnI	CCWGG	1 cut(s)	2028
AjuI	GAANNNNNNNTTGG	6 cut(s)	856, 888, 1170, 1202, 1743, 1775
AluBI	AGCT	6 cut(s)	1111, 1386, 1476, 2240, 2324, 2357
AluI	AGCT	6 cut(s)	1111, 1386, 1476, 2240, 2324, 2357
Alw21I	GWGCWC	1 cut(s)	2242
Alw26I	GTCTC	3 cut(s)	368, 561, 2262
AlwI	GGATC	1 cut(s)	180
AoxI	GGCC	5 cut(s)	114, 544, 1043, 1407, 1422
ApeKI	GCWGC	5 cut(s)	458, 1111, 1386, 1473, 2191
ApoI	RAATTY	3 cut(s)	1199, 1372, 2168
AseI	ATTAAT	1 cut(s)	263
AspLEI	GCGC	2 cut(s)	2189, 2191
AspS9I	GGNCC	4 cut(s)	443, 1423, 1515, 1684
AsuC2I	CCSGG	1 cut(s)	2148
AsuHPI	GGTGA	3 cut(s)	361, 1724, 2219
AsuII	TTCGAA	2 cut(s)	478, 1152
AvaII	GGWCC	3 cut(s)	443, 1515, 1684
AxyI	CCTNAGG	1 cut(s)	713
BaeGI	GKGCMC	2 cut(s)	2249, 2303
BalI	TGGCCA	1 cut(s)	546
BanI	GGYRCC	1 cut(s)	1275
BanII	GRGCYC	1 cut(s)	2242
BarI	GAAGNNNNNNTAC	2 cut(s)	210, 242
BauI	CACGAG	1 cut(s)	1390
BbsI	GAAGAC	2 cut(s)	487, 1244
Bbv12I	GWGCWC	1 cut(s)	2242
BbvI	GCAGC	5 cut(s)	470, 1098, 1373, 1485, 2203
BccI	CCATC	8 cut(s)	536, 763, 1209, 1295, 1399, 1870, 2204, 2383
BceAI	ACGGC	3 cut(s)	345, 1030, 1437
BciT130I	CCWGG	1 cut(s)	2030
BciVI	GTATCC	1 cut(s)	844
BclI	TGATCA	3 cut(s)	639, 1618, 1723
BcnI	CCSGG	1 cut(s)	2148
BcoDI	GTCTC	3 cut(s)	368, 561, 2262
BfaI	CTAG	5 cut(s)	791, 1248, 2069, 2225, 2358
BfmI	CTRYAG	2 cut(s)	1363, 1567
BfrI	CTTAAG	1 cut(s)	1120
BfuI	GTATCC	1 cut(s)	844
BglII	AGATCT	2 cut(s)	308, 793
BisI	GCNGC	6 cut(s)	459, 1112, 1387, 1474, 1504, 2192
BlsI	GCNGC	6 cut(s)	460, 1113, 1388, 1475, 1505, 2193
BmcAI	AGTACT	1 cut(s)	24
Bme1390I	CCNGG	2 cut(s)	2030, 2148
Bme18I	GGWCC	3 cut(s)	443, 1515, 1684
BmgBI	CACGTC	1 cut(s)	2304
BmgT120I	GGNCC	4 cut(s)	443, 1423, 1515, 1684
BmiI	GGNNCC	5 cut(s)	444, 719, 1277, 1425, 2230
BmrFI	CCNGG	2 cut(s)	2030, 2148
BmrI	ACTGGG	3 cut(s)	1347, 1487, 2394
BmsI	GCATC	4 cut(s)	366, 1338, 1572, 2089
BmuI	ACTGGG	3 cut(s)	1347, 1487, 2394
BoxI	GACNNNNGTC	1 cut(s)	968
BpiI	GAAGAC	2 cut(s)	487, 1244
BpmI	CTGGAG	2 cut(s)	1124, 2138
Bpu10I	CCTNAGC	2 cut(s)	2076, 2241
Bpu14I	TTCGAA	2 cut(s)	478, 1152
BpuEI	CTTGAG	2 cut(s)	139, 1310
BpuMI	CCSGG	1 cut(s)	2148
BsaAI	YACGTR	1 cut(s)	840
BsaBI	GATNNNNATC	1 cut(s)	1623
BsaHI	GRCGYC	1 cut(s)	2258
BsaI	GGTCTC	1 cut(s)	561
BsaJI	CCNNGG	1 cut(s)	1177
BsaWI	WCCGGW	2 cut(s)	445, 2231
BsaXI	ACNNNNNCTCC	2 cut(s)	665, 695
Bsc4I	CCNNNNNNNGG	5 cut(s)	496, 579, 1122, 1760, 2147
Bse1I	ACTGG	8 cut(s)	84, 303, 1107, 1353, 1493, 1518, 2285, 2389
Bse21I	CCTNAGG	1 cut(s)	713
Bse3DI	GCAATG	2 cut(s)	1441, 2221
Bse8I	GATNNNNATC	1 cut(s)	1623
BseBI	CCWGG	1 cut(s)	2030
BseDI	CCNNGG	1 cut(s)	1177
BseGI	GGATG	4 cut(s)	505, 1090, 1353, 2394
BseJI	GATNNNNATC	1 cut(s)	1623
BseLI	CCNNNNNNNGG	5 cut(s)	496, 579, 1122, 1760, 2147
BseMI	GCAATG	2 cut(s)	1441, 2221
BseMII	CTCAG	6 cut(s)	159, 713, 881, 1491, 2067, 2255
BseNI	ACTGG	8 cut(s)	84, 303, 1107, 1353, 1493, 1518, 2285, 2389
BsePI	GCGCGC	1 cut(s)	2187
BseRI	GAGGAG	3 cut(s)	422, 2390, 2421
BseSI	GKGCMC	2 cut(s)	2249, 2303
BseXI	GCAGC	5 cut(s)	470, 1098, 1373, 1485, 2203
BsgI	GTGCAG	1 cut(s)	1372
Bsh1236I	CGCG	2 cut(s)	2187, 2189
BshFI	GGCC	5 cut(s)	116, 546, 1045, 1409, 1424
BshNI	GGYRCC	1 cut(s)	1275
BsiHKAI	GWGCWC	1 cut(s)	2242
BsiSI	CCGG	3 cut(s)	446, 2148, 2232
BslFI	GGGAC	3 cut(s)	395, 857, 1481
BslI	CCNNNNNNNGG	5 cut(s)	496, 579, 1122, 1760, 2147
BsmAI	GTCTC	3 cut(s)	368, 561, 2262
BsmBI	CGTCTC	2 cut(s)	368, 2262
BsmFI	GGGAC	3 cut(s)	395, 857, 1481
BsnI	GGCC	5 cut(s)	116, 546, 1045, 1409, 1424
Bso31I	GGTCTC	1 cut(s)	561
Bsp119I	TTCGAA	2 cut(s)	478, 1152
Bsp1286I	GDGCHC	3 cut(s)	2242, 2249, 2303
Bsp1407I	TGTACA	1 cut(s)	1508
BspACI	CCGC	7 cut(s)	379, 799, 1288, 1427, 1465, 1504, 2313
BspANI	GGCC	5 cut(s)	116, 546, 1045, 1409, 1424
BspCNI	CTCAG	6 cut(s)	160, 714, 882, 1490, 2068, 2254
BspFNI	CGCG	2 cut(s)	2187, 2189
BspHI	TCATGA	2 cut(s)	175, 1621
BspLI	GGNNCC	5 cut(s)	444, 719, 1277, 1425, 2230
BspMAI	CTGCAG	1 cut(s)	1367
BspPI	GGATC	1 cut(s)	180
BspT104I	TTCGAA	2 cut(s)	478, 1152
BspT107I	GGYRCC	1 cut(s)	1275
BspTI	CTTAAG	1 cut(s)	1120
BspTNI	GGTCTC	1 cut(s)	561
BsrDI	GCAATG	2 cut(s)	1441, 2221
BsrGI	TGTACA	1 cut(s)	1508
BsrI	ACTGG	8 cut(s)	84, 303, 1107, 1353, 1493, 1518, 2285, 2389
BssECI	CCNNGG	1 cut(s)	1177
BssHII	GCGCGC	1 cut(s)	2187
BssNAI	GTATAC	2 cut(s)	43, 2127
BssNI	GRCGYC	1 cut(s)	2258
BssSI	CACGAG	1 cut(s)	1390
BssT1I	CCWWGG	1 cut(s)	1177
Bst1107I	GTATAC	2 cut(s)	43, 2127
Bst2BI	CACGAG	1 cut(s)	1390
Bst2UI	CCWGG	1 cut(s)	2030
Bst4CI	ACNGT	6 cut(s)	22, 920, 936, 1053, 1579, 2296
Bst6I	CTCTTC	5 cut(s)	532, 1700, 1772, 1895, 2392
BstACI	GRCGYC	1 cut(s)	2258
BstAFI	CTTAAG	1 cut(s)	1120
BstAUI	TGTACA	1 cut(s)	1508
BstBAI	YACGTR	1 cut(s)	840
BstBI	TTCGAA	2 cut(s)	478, 1152
BstC8I	GCNNGC	5 cut(s)	392, 1290, 2189, 2249, 2322
BstF5I	GGATG	4 cut(s)	505, 1090, 1353, 2394
BstFNI	CGCG	2 cut(s)	2187, 2189
BstHHI	GCGC	2 cut(s)	2189, 2191
BstMAI	GTCTC	3 cut(s)	368, 561, 2262
BstMWI	GCNNNNNNNGC	5 cut(s)	892, 1070, 1473, 2321, 2326
BstNI	CCWGG	1 cut(s)	2030
BstNSI	RCATGY	1 cut(s)	2066
BstPAI	GACNNNNGTC	1 cut(s)	968
BstSCI	CCNGG	2 cut(s)	2028, 2146
BstSFI	CTRYAG	2 cut(s)	1363, 1567
BstSLI	GKGCMC	2 cut(s)	2249, 2303
BstUI	CGCG	2 cut(s)	2187, 2189
BstV1I	GCAGC	5 cut(s)	470, 1098, 1373, 1485, 2203
BstV2I	GAAGAC	2 cut(s)	487, 1244
BstX2I	RGATCY	2 cut(s)	308, 793
BstYI	RGATCY	2 cut(s)	308, 793
BstZ17I	GTATAC	2 cut(s)	43, 2127
Bsu36I	CCTNAGG	1 cut(s)	713
BsuI	GTATCC	1 cut(s)	844
BsuRI	GGCC	5 cut(s)	116, 546, 1045, 1409, 1424
BtrI	CACGTC	1 cut(s)	2304
BtsCI	GGATG	4 cut(s)	505, 1090, 1353, 2394
BtsIMutI	CAGTG	6 cut(s)	461, 925, 931, 1485, 1584, 2292
Cac8I	GCNNGC	5 cut(s)	392, 1290, 2189, 2249, 2322
CciI	TCATGA	2 cut(s)	175, 1621
CfoI	GCGC	2 cut(s)	2189, 2191
Cfr13I	GGNCC	4 cut(s)	443, 1423, 1515, 1684
CseI	GACGC	1 cut(s)	2193
Csp6I	GTAC	8 cut(s)	23, 611, 776, 916, 1397, 1509, 1888, 2011
CviQI	GTAC	8 cut(s)	23, 611, 776, 916, 1397, 1509, 1888, 2011
DraI	TTTAAA	1 cut(s)	1651
EaeI	YGGCCR	2 cut(s)	544, 1407
Eam1104I	CTCTTC	5 cut(s)	532, 1700, 1772, 1895, 2392
EarI	CTCTTC	5 cut(s)	532, 1700, 1772, 1895, 2392
Ecl136II	GAGCTC	1 cut(s)	2240
Eco130I	CCWWGG	1 cut(s)	1177
Eco24I	GRGCYC	1 cut(s)	2242
Eco31I	GGTCTC	1 cut(s)	561
Eco32I	GATATC	1 cut(s)	824
Eco47I	GGWCC	3 cut(s)	443, 1515, 1684
Eco53kI	GAGCTC	1 cut(s)	2240
Eco57I	CTGAAG	4 cut(s)	749, 1046, 1238, 1292
Eco81I	CCTNAGG	1 cut(s)	713
EcoICRI	GAGCTC	1 cut(s)	2240
EcoO109I	RGGNCCY	1 cut(s)	1684
EcoRII	CCWGG	1 cut(s)	2028
EcoRV	GATATC	1 cut(s)	824
EcoT14I	CCWWGG	1 cut(s)	1177
EcoT22I	ATGCAT	1 cut(s)	2331
EcoT38I	GRGCYC	1 cut(s)	2242
ErhI	CCWWGG	1 cut(s)	1177
Esp3I	CGTCTC	2 cut(s)	368, 2262
FalI	AAGNNNNNCTT	4 cut(s)	1877, 1909, 2000, 2032
FaqI	GGGAC	3 cut(s)	395, 857, 1481
FauI	CCCGC	4 cut(s)	372, 792, 1281, 1434
FauNDI	CATATG	1 cut(s)	280
FbaI	TGATCA	3 cut(s)	639, 1618, 1723
FblI	GTMKAC	2 cut(s)	42, 2126
Fnu4HI	GCNGC	6 cut(s)	459, 1112, 1387, 1474, 1504, 2192
FokI	GGATG	4 cut(s)	512, 1097, 1360, 2401
FriOI	GRGCYC	1 cut(s)	2242
Fsp4HI	GCNGC	6 cut(s)	459, 1112, 1387, 1474, 1504, 2192
FspBI	CTAG	5 cut(s)	791, 1248, 2069, 2225, 2358
GlaI	GCGC	2 cut(s)	2188, 2190
GluI	GCNGC	6 cut(s)	459, 1112, 1387, 1474, 1504, 2192
GsuI	CTGGAG	2 cut(s)	1124, 2138
HaeIII	GGCC	5 cut(s)	116, 546, 1045, 1409, 1424
HapII	CCGG	3 cut(s)	446, 2148, 2232
HgaI	GACGC	1 cut(s)	2193
HhaI	GCGC	2 cut(s)	2189, 2191
Hin1I	GRCGYC	1 cut(s)	2258
Hin6I	GCGC	2 cut(s)	2187, 2189
HinP1I	GCGC	2 cut(s)	2187, 2189
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HpaI	GTTAAC	1 cut(s)	430
HpaII	CCGG	3 cut(s)	446, 2148, 2232
HphI	GGTGA	3 cut(s)	361, 1724, 2219
Hpy166II	GTNNAC	8 cut(s)	43, 430, 709, 1397, 1511, 2127, 2310, 2382
Hpy8I	GTNNAC	8 cut(s)	43, 430, 709, 1397, 1511, 2127, 2310, 2382
Hpy99I	CGWCG	3 cut(s)	2260, 2263, 2308
HpyAV	CCTTC	6 cut(s)	212, 240, 340, 1075, 1225, 1695
HpyCH4III	ACNGT	6 cut(s)	22, 920, 936, 1053, 1579, 2296
HpyCH4IV	ACGT	4 cut(s)	839, 965, 2258, 2303
HpyF10VI	GCNNNNNNNGC	5 cut(s)	892, 1070, 1473, 2321, 2326
HpySE526I	ACGT	4 cut(s)	839, 965, 2258, 2303
Hsp92I	GRCGYC	1 cut(s)	2258
HspAI	GCGC	2 cut(s)	2187, 2189
Ksp22I	TGATCA	3 cut(s)	639, 1618, 1723
KspAI	GTTAAC	1 cut(s)	430
LmnI	GCTCC	1 cut(s)	883
Lsp1109I	GCAGC	5 cut(s)	470, 1098, 1373, 1485, 2203
LweI	GCATC	4 cut(s)	366, 1338, 1572, 2089
MaeI	CTAG	5 cut(s)	791, 1248, 2069, 2225, 2358
MaeII	ACGT	4 cut(s)	839, 965, 2258, 2303
MaeIII	GTNAC	7 cut(s)	187, 681, 1047, 1520, 1712, 1781, 1904
MfeI	CAATTG	1 cut(s)	255
MflI	RGATCY	2 cut(s)	308, 793
MhlI	GDGCHC	3 cut(s)	2242, 2249, 2303
MlsI	TGGCCA	1 cut(s)	546
MluNI	TGGCCA	1 cut(s)	546
MlyI	GAGTC	4 cut(s)	733, 1727, 1840, 1963
MmeI	TCCRAC	2 cut(s)	304, 2383
Mox20I	TGGCCA	1 cut(s)	546
Mph1103I	ATGCAT	1 cut(s)	2331
MscI	TGGCCA	1 cut(s)	546
MslI	CAYNNNNRTG	1 cut(s)	1637
Msp20I	TGGCCA	1 cut(s)	546
MspA1I	CMGCKG	1 cut(s)	1506
MspCI	CTTAAG	1 cut(s)	1120
MspI	CCGG	3 cut(s)	446, 2148, 2232
MspR9I	CCNGG	2 cut(s)	2030, 2148
MunI	CAATTG	1 cut(s)	255
MvaI	CCWGG	1 cut(s)	2030
MvnI	CGCG	2 cut(s)	2187, 2189
MwoI	GCNNNNNNNGC	5 cut(s)	892, 1070, 1473, 2321, 2326
NciI	CCSGG	1 cut(s)	2148
NdeI	CATATG	1 cut(s)	280
NlaIV	GGNNCC	5 cut(s)	444, 719, 1277, 1425, 2230
NmeAIII	GCCGAG	2 cut(s)	1304, 2341
NmuCI	GTSAC	2 cut(s)	1520, 1712
NsiI	ATGCAT	1 cut(s)	2331
NspI	RCATGY	1 cut(s)	2066
NspV	TTCGAA	2 cut(s)	478, 1152
PagI	TCATGA	2 cut(s)	175, 1621
PauI	GCGCGC	1 cut(s)	2187
PcsI	WCGNNNNNNNCGW	3 cut(s)	2191, 2255, 2300
PfeI	GAWTC	6 cut(s)	700, 1154, 1359, 1412, 1798, 1921
PflFI	GACNNNGTC	1 cut(s)	1639
PflMI	CCANNNNNTGG	1 cut(s)	1760
PfoI	TCCNGGA	1 cut(s)	2028
PkrI	GCNGC	6 cut(s)	460, 1113, 1388, 1475, 1505, 2193
PleI	GAGTC	4 cut(s)	732, 1726, 1840, 1963
PpsI	GAGTC	4 cut(s)	732, 1726, 1840, 1963
Ppu21I	YACGTR	1 cut(s)	840
PpuMI	RGGWCCY	1 cut(s)	1684
PshAI	GACNNNNGTC	1 cut(s)	968
PshBI	ATTAAT	1 cut(s)	263
Psp124BI	GAGCTC	1 cut(s)	2242
Psp5II	RGGWCCY	1 cut(s)	1684
Psp6I	CCWGG	1 cut(s)	2028
PspGI	CCWGG	1 cut(s)	2028
PspN4I	GGNNCC	5 cut(s)	444, 719, 1277, 1425, 2230
PspPI	GGNCC	4 cut(s)	443, 1423, 1515, 1684
PspPPI	RGGWCCY	1 cut(s)	1684
PstI	CTGCAG	1 cut(s)	1367
PsuI	RGATCY	2 cut(s)	308, 793
PsyI	GACNNNGTC	1 cut(s)	1639
PteI	GCGCGC	1 cut(s)	2187
RsaI	GTAC	8 cut(s)	24, 612, 777, 917, 1398, 1510, 1889, 2012
RsaNI	GTAC	8 cut(s)	23, 611, 776, 916, 1397, 1509, 1888, 2011
RseI	CAYNNNNRTG	1 cut(s)	1637
SacI	GAGCTC	1 cut(s)	2242
SatI	GCNGC	6 cut(s)	459, 1112, 1387, 1474, 1504, 2192
Sau96I	GGNCC	4 cut(s)	443, 1423, 1515, 1684
ScaI	AGTACT	1 cut(s)	24
SchI	GAGTC	4 cut(s)	733, 1727, 1840, 1963
ScrFI	CCNGG	2 cut(s)	2030, 2148
SduI	GDGCHC	3 cut(s)	2242, 2249, 2303
SfaNI	GCATC	4 cut(s)	366, 1338, 1572, 2089
SfcI	CTRYAG	2 cut(s)	1363, 1567
SfuI	TTCGAA	2 cut(s)	478, 1152
SinI	GGWCC	3 cut(s)	443, 1515, 1684
SmiMI	CAYNNNNRTG	1 cut(s)	1637
SmlI	CTYRAG	3 cut(s)	118, 1120, 1325
SmoI	CTYRAG	3 cut(s)	118, 1120, 1325
SsiI	CCGC	7 cut(s)	379, 799, 1288, 1427, 1465, 1504, 2313
SspI	AATATT	2 cut(s)	164, 2053
SspMI	CTAG	5 cut(s)	791, 1248, 2069, 2225, 2358
SstI	GAGCTC	1 cut(s)	2242
StyD4I	CCNGG	2 cut(s)	2028, 2146
StyI	CCWWGG	1 cut(s)	1177
TaaI	ACNGT	6 cut(s)	22, 920, 936, 1053, 1579, 2296
TaiI	ACGT	4 cut(s)	842, 968, 2261, 2306
TaqI	TCGA	4 cut(s)	478, 1069, 1152, 2261
TatI	WGTACW	3 cut(s)	22, 1396, 1508
TauI	GCSGC	1 cut(s)	1506
TfiI	GAWTC	6 cut(s)	700, 1154, 1359, 1412, 1798, 1921
TscAI	CASTG	6 cut(s)	468, 925, 931, 1485, 1584, 2292
TseFI	GTSAC	2 cut(s)	1520, 1712
TseI	GCWGC	5 cut(s)	458, 1111, 1386, 1473, 2191
Tsp45I	GTSAC	2 cut(s)	1520, 1712
TspGWI	ACGGA	3 cut(s)	1528, 2196, 2286
TspRI	CASTG	6 cut(s)	468, 925, 931, 1485, 1584, 2292
Tth111I	GACNNNGTC	1 cut(s)	1639
Van91I	CCANNNNNTGG	1 cut(s)	1760
Vha464I	CTTAAG	1 cut(s)	1120
VpaK11BI	GGWCC	3 cut(s)	443, 1515, 1684
VspI	ATTAAT	1 cut(s)	263
XapI	RAATTY	3 cut(s)	1199, 1372, 2168
XbaI	TCTAGA	1 cut(s)	790
XceI	RCATGY	1 cut(s)	2066
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1873, 1996
XmiI	GTMKAC	2 cut(s)	42, 2126
XspI	CTAG	5 cut(s)	791, 1248, 2069, 2225, 2358
ZraI	GACGTC	1 cut(s)	2259
ZrmI	AGTACT	1 cut(s)	24
Zsp2I	ATGCAT	1 cut(s)	2331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.