Rroxscaffold_7G00202970

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
51481388 .. 51482026
639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00202970.1

Sequence Viewer

Length: 621 bp
ATGACGAGGTTGACTCATCTATATCTTCCCAAGTGGTGTGGCAACATGGTTAATGAGCTGAAGTTGTCCAATCTTCACCGCTTGCAGACACTAGTGAACTTCCCTGAAAACAAATGTGATGTAAAAGATCTTCTGAAACTGGTGCTCAATGACCCAGCACATTTCAAAAGTTTAGTAGAAATTTTCAGTCCCCCAAATGATGTCACATTAAGCTGCCTTCAGTCCTTGTCCTTTAAAAGTGACACACTTGCATTCCCCAATGAGGTAGTAGATGTCAGGCAACTCCTGTCAAGCTGTTCAGCTCTTCAGAAGTTTCATGTGGAAGGACGAATAGCAAAGCTACCAGAATACCTTCAGTTCCCTCCAAGCATTGCCAAGTTAACTTTATGGGGTTCTGATCTTGTGGAAGATCCAATCCCAACATTGGAGAAGCTGCCTAACTTGAGAATTCTGAGCGGATGGCAAATGTTCATGGGGAAGAAAATGGTTTTCTCTGATCAAGGTTTTCCTAAACTCAGAAGTCTACTGCTTCGTGGCTGTAGCATTTTGAGGACTGGAGGATGGAGGAAGGAGCTATGCCGAGTCTTTATCGATTGGAAATCTCAAATTGCATTAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

206

Amino Acids

23.57

Weight (kDa)

9.18

Isoelectric Point (pI)

44.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 3 - 178 1.4e-06 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000069)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G50180 AT1G53350 AT1G58390 AT1G58390 AT1G58400 AT1G58400 AT1G58400 AT1G58410 AT1G58410 AT1G58410 AT1G58410 AT1G58602 AT1G58602 AT1G58807 AT1G58807 AT1G58848 AT1G58848 AT1G59124 AT1G59124 AT1G59218 AT1G59218 AT1G59218 AT1G59620 AT1G59780 AT1G59780 AT5G35450 AT5G35450 AT5G43470 AT5G43470 AT5G43470 AT5G43470 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620
fragaria_vesca FvH4_4g04072 FvH4_4g22931 FvH4_4g22931 FvH4_4g22940 FvH4_6g49940 FvH4_6g49940 FvH4_7g08100 FvH4_7g08870 FvH4_7g08870 FvH4_7g09280 FvH4_7g09290 FvH4_7g15190 FvH4_7g15200 FvH4_7g15240 FvH4_7g15240 FvH4_7g33440
malus_domestica MD00G1174600.v1.1 MD01G1113700.v1.1 MD03G1071300.v1.1 MD04G1041500.v1.1 MD04G1238000.v1.1 MD07G1029000.v1.1 MD07G1092100.v1.1 MD07G1092300.v1.1 MD07G1092600.v1.1 MD12G1256300.v1.1 MD13G1128200.v1.1 MD13G1128400.v1.1 MD17G1268000.v1.1
prunus_persica Prupe.1G041300_v2.0.a1 Prupe.1G041300_v2.0.a1 Prupe.1G042900_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043600_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G046700_v2.0.a1 Prupe.1G047700_v2.0.a1 Prupe.1G047900_v2.0.a1 Prupe.1G048000_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G049900_v2.0.a1 Prupe.1G051500_v2.0.a1 Prupe.1G051800_v2.0.a1 Prupe.1G051900_v2.0.a1 Prupe.1G052200_v2.0.a1 Prupe.1G194900_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117300_v2.0.a1 Prupe.2G117400_v2.0.a1 Prupe.2G117500_v2.0.a1 Prupe.2G117700_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G119900_v2.0.a1
pyrus_communis pycom03g05750 pycom04g21110 pycom07g07530 pycom07g07590 pycom13g11110 pycom13g11140 pycom13g11160 pycom13g11170 pycom17g26680
rosa_chinensis RchiOBHm_Chr1g0341231 RchiOBHm_Chr1g0344091 RchiOBHm_Chr1g0344161 RchiOBHm_Chr1g0345001 RchiOBHm_Chr1g0345351 RchiOBHm_Chr1g0345371 RchiOBHm_Chr1g0345391 RchiOBHm_Chr1g0345531 RchiOBHm_Chr1g0345551 RchiOBHm_Chr1g0345571 RchiOBHm_Chr1g0345581 RchiOBHm_Chr1g0345661 RchiOBHm_Chr1g0345691 RchiOBHm_Chr1g0345761 RchiOBHm_Chr1g0345791 RchiOBHm_Chr1g0345821 RchiOBHm_Chr1g0345911 RchiOBHm_Chr1g0345941 RchiOBHm_Chr1g0357611 RchiOBHm_Chr1g0357911 RchiOBHm_Chr1g0357921 RchiOBHm_Chr1g0357931 RchiOBHm_Chr1g0357971 RchiOBHm_Chr1g0358121 RchiOBHm_Chr1g0383491 RchiOBHm_Chr1g0383511 RchiOBHm_Chr1g0383521 RchiOBHm_Chr3g0480581 RchiOBHm_Chr4g0394341 RchiOBHm_Chr4g0394361 RchiOBHm_Chr4g0394411 RchiOBHm_Chr4g0394441 RchiOBHm_Chr4g0407681 RchiOBHm_Chr4g0429191 RchiOBHm_Chr4g0429201 RchiOBHm_Chr4g0429211 RchiOBHm_Chr4g0429221 RchiOBHm_Chr6g0265091
rosa_laevigata RLG00000007088 RLG00000008700 RLG00000009190 RLG00000009702 RLG00000014210 RLG00000028829 RLG00000028833 RLG00000028837 RLG00000028838 RLG00000028921 RLG00000028926
rosa_multiflora Rmu_co8366955.1_g000001 Rmu_co8394205.1_g000001 Rmu_sc0000019.1_g000001 Rmu_sc0000054.1_g000031 Rmu_sc0000054.1_g000033 Rmu_sc0000200.1_g000002 Rmu_sc0000200.1_g000007 Rmu_sc0000200.1_g000018 Rmu_sc0000200.1_g000020 Rmu_sc0000200.1_g000021 Rmu_sc0000251.1_g000012 Rmu_sc0000251.1_g000015 Rmu_sc0000251.1_g000028 Rmu_sc0000253.1_g000015 Rmu_sc0000255.1_g000045 Rmu_sc0000255.1_g000046 Rmu_sc0001292.1_g000013 Rmu_sc0001292.1_g000018 Rmu_sc0001292.1_g000028 Rmu_sc0001292.1_g000029 Rmu_sc0001349.1_g000006 Rmu_sc0001349.1_g000014 Rmu_sc0001582.1_g000006 Rmu_sc0001582.1_g000018 Rmu_sc0001582.1_g000020 Rmu_sc0001692.1_g000007 Rmu_sc0001692.1_g000024 Rmu_sc0001692.1_g000026 Rmu_sc0001692.1_g000029 Rmu_sc0001692.1_g000030 Rmu_sc0001835.1_g000006 Rmu_sc0001835.1_g000010 Rmu_sc0002071.1_g000005 Rmu_sc0002276.1_g000002 Rmu_sc0002276.1_g000009 Rmu_sc0002329.1_g000018 Rmu_sc0002329.1_g000023 Rmu_sc0002329.1_g000025 Rmu_sc0002523.1_g000005 Rmu_sc0003573.1_g000005 Rmu_sc0003573.1_g000006 Rmu_sc0004099.1_g000021 Rmu_sc0005812.1_g000009 Rmu_sc0006271.1_g000002 Rmu_sc0006287.1_g000038 Rmu_sc0006439.1_g000008 Rmu_sc0007456.1_g000004 Rmu_sc0007581.1_g000009 Rmu_sc0007849.1_g000014 Rmu_sc0008115.1_g000012 Rmu_sc0010521.1_g000004 Rmu_sc0012471.1_g000017 Rmu_sc0014762.1_g000001 Rmu_sc0015150.1_g000003 Rmu_sc0017221.1_g000001 Rmu_sc0017299.1_g000001 Rmu_sc0017299.1_g000002 Rmu_sc0021457.1_g000001 Rmu_sc0022067.1_g000001 Rmu_sc0033275.1_g000001 Rmu_ssc0000245.1_g000012 Rmu_ssc0000359.1_g000035 Rmu_ssc0000359.1_g000067 Rmu_ssc0000359.1_g000072 Rmu_ssc0000434.1_g000005 Rmu_ssc0000434.1_g000007
rosa_roxburghii Rroxscaffold_4G00298420 Rroxscaffold_4G00298720 Rroxscaffold_4G00308990 Rroxscaffold_4G00309000 Rroxscaffold_4G00309010 Rroxscaffold_4G00309050 Rroxscaffold_4G00309070 Rroxscaffold_4G00309100 Rroxscaffold_4G00310030 Rroxscaffold_4G00310050 Rroxscaffold_4G00311880 Rroxscaffold_5G00339420 Rroxscaffold_5G00339450 Rroxscaffold_5G00344880 Rroxscaffold_5G00352270 Rroxscaffold_5G00362240 Rroxscaffold_5G00370840 Rroxscaffold_7G00202970
rosa_rugosa Rorug01G0159100.1 Rorug01G0159200.1 Rorug01G0171700 Rorug01G0171900 Rorug01G0172000 Rorug01G0191700 Rorug01G0191800 Rorug01G0256900 Rorug01G0257000 Rorug01G0257100 Rorug03G0198000 Rorug03G0366300.1 Rorug03G0366400.1 Rorug03G0366500.1 Rorug04G0081200 Rorug04G0081200 Rorug04G0081200 Rorug04G0233700 Rorug04G0233800 Rorug04G0233800 Rorug06G0013300
rosa_samantha Rh1CG138800 Rh1CG161300 Rh1CG173800 Rh1CG179800 Rh1CG180100 Rh1CG180500 Rh1CG180800 Rh1CG180900 Rh1CG194100 Rh1DG205100 Rh3AG236300 Rh4AG052000 Rh4AG052100 Rh4AG145900 Rh4AG289700 Rh4AG289800 Rh6AG136800 Rh6AG137300 Rh6BG133600 Rh6CG132000 Rh6CG134000 Rh6DG119300
rosa_wichuraiana Rw0G003420 Rw1G015500 Rw1G016110 Rw1G016180 Rw1G016210 Rw1G016230 Rw1G016280 Rw1G016440 Rw1G016450 Rw1G016460 Rw1G016480 Rw1G017490 Rw1G024140 Rw1G024160 Rw3G022530 Rw4G004140 Rw4G004190 Rw4G011850 Rw6G011800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 456
AccI GTMKAC 1 cut(s) 523
AciI CCGC 2 cut(s) 79, 456
AclWI GGATC 1 cut(s) 404
AcsI RAATTY 2 cut(s) 180, 447
AcuI CTGAAG 4 cut(s) 80, 203, 290, 338
AfiI CCNNNNNNNGG 2 cut(s) 262, 424
AgsI TTSAA 1 cut(s) 166
AhlI ACTAGT 1 cut(s) 91
AluBI AGCT 7 cut(s) 58, 213, 294, 302, 340, 433, 574
AluI AGCT 7 cut(s) 58, 213, 294, 302, 340, 433, 574
Alw21I GWGCWC 1 cut(s) 147
AlwI GGATC 1 cut(s) 404
ApeKI GCWGC 2 cut(s) 213, 433
ApoI RAATTY 2 cut(s) 180, 447
Asp700I GAANNNNTTC 1 cut(s) 351
AsuHPI GGTGA 1 cut(s) 68
BarI GAAGNNNNNNTAC 2 cut(s) 114, 146
Bbv12I GWGCWC 1 cut(s) 147
BbvI GCAGC 2 cut(s) 200, 420
BccI CCATC 2 cut(s) 453, 555
BclI TGATCA 1 cut(s) 496
BcuI ACTAGT 1 cut(s) 91
BfaI CTAG 1 cut(s) 92
BfmI CTRYAG 1 cut(s) 538
BglII AGATCT 1 cut(s) 127
BisI GCNGC 2 cut(s) 214, 434
BlsI GCNGC 2 cut(s) 215, 435
BplI GAGNNNNNCTC 1 cut(s) 30
BpmI CTGGAG 1 cut(s) 576
BpuEI CTTGAG 1 cut(s) 463
Bsa29I ATCGAT 1 cut(s) 591
Bsc4I CCNNNNNNNGG 2 cut(s) 262, 424
Bse1I ACTGG 2 cut(s) 144, 559
Bse3DI GCAATG 1 cut(s) 369
BseCI ATCGAT 1 cut(s) 591
BseGI GGATG 2 cut(s) 464, 566
BseLI CCNNNNNNNGG 2 cut(s) 262, 424
BseMI GCAATG 1 cut(s) 369
BseMII CTCAG 2 cut(s) 443, 529
BseNI ACTGG 2 cut(s) 144, 559
BseXI GCAGC 2 cut(s) 200, 420
BseYI CCCAGC 1 cut(s) 154
BshVI ATCGAT 1 cut(s) 591
BsiHKAI GWGCWC 1 cut(s) 147
BslFI GGGAC 1 cut(s) 174
BslI CCNNNNNNNGG 2 cut(s) 262, 424
BsmFI GGGAC 1 cut(s) 174
BsmI GAATGC 1 cut(s) 251
Bsp1286I GDGCHC 1 cut(s) 147
Bsp143I GATC 4 cut(s) 127, 397, 409, 496
BspACI CCGC 2 cut(s) 79, 456
BspCNI CTCAG 2 cut(s) 444, 528
BspDI ATCGAT 1 cut(s) 591
BspPI GGATC 1 cut(s) 404
BspQI GCTCTTC 1 cut(s) 309
BsrBI CCGCTC 1 cut(s) 456
BsrDI GCAATG 1 cut(s) 369
BsrI ACTGG 2 cut(s) 144, 559
BssMI GATC 4 cut(s) 127, 397, 409, 496
Bst6I CTCTTC 1 cut(s) 309
BstC8I GCNNGC 1 cut(s) 83
BstDEI CTNAG 2 cut(s) 452, 515
BstF5I GGATG 2 cut(s) 464, 566
BstKTI GATC 4 cut(s) 130, 400, 412, 499
BstMBI GATC 4 cut(s) 127, 397, 409, 496
BstSFI CTRYAG 1 cut(s) 538
BstV1I GCAGC 2 cut(s) 200, 420
BstX2I RGATCY 2 cut(s) 127, 409
BstYI RGATCY 2 cut(s) 127, 409
Bsu15I ATCGAT 1 cut(s) 591
BsuTUI ATCGAT 1 cut(s) 591
BtsCI GGATG 2 cut(s) 464, 566
Cac8I GCNNGC 1 cut(s) 83
ClaI ATCGAT 1 cut(s) 591
CspCI CAANNNNNGTGG 2 cut(s) 19, 54
CviAII CATG 3 cut(s) 46, 317, 472
CviJI RGCY 8 cut(s) 58, 213, 294, 302, 340, 433, 537, 574
CviKI_1 RGCY 8 cut(s) 58, 213, 294, 302, 340, 433, 537, 574
DdeI CTNAG 2 cut(s) 452, 515
DpnI GATC 4 cut(s) 129, 399, 411, 498
DpnII GATC 4 cut(s) 127, 397, 409, 496
DraI TTTAAA 1 cut(s) 235
Eam1104I CTCTTC 1 cut(s) 309
EarI CTCTTC 1 cut(s) 309
Eco57I CTGAAG 4 cut(s) 80, 203, 290, 338
EcoRI GAATTC 1 cut(s) 447
FaeI CATG 3 cut(s) 49, 320, 475
FaiI YATR 6 cut(s) 22, 47, 318, 388, 473, 577
FaqI GGGAC 1 cut(s) 174
FatI CATG 3 cut(s) 45, 316, 471
FbaI TGATCA 1 cut(s) 496
FblI GTMKAC 1 cut(s) 523
Fnu4HI GCNGC 2 cut(s) 214, 434
FokI GGATG 2 cut(s) 471, 573
Fsp4HI GCNGC 2 cut(s) 214, 434
FspBI CTAG 1 cut(s) 92
GluI GCNGC 2 cut(s) 214, 434
GsaI CCCAGC 1 cut(s) 158
GsuI CTGGAG 1 cut(s) 576
Hin1II CATG 3 cut(s) 49, 320, 475
HincII GTYRAC 2 cut(s) 12, 381
HindII GTYRAC 2 cut(s) 12, 381
HinfI GANTC 2 cut(s) 13, 582
HpaI GTTAAC 1 cut(s) 381
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 4 cut(s) 12, 97, 381, 524
Hpy188I TCNGA 6 cut(s) 135, 309, 397, 453, 496, 518
Hpy8I GTNNAC 4 cut(s) 12, 97, 381, 524
HpyAV CCTTC 4 cut(s) 227, 317, 362, 562
HpyCH4V TGCA 3 cut(s) 85, 251, 611
HpyF3I CTNAG 2 cut(s) 452, 515
Hsp92II CATG 3 cut(s) 49, 320, 475
Ksp22I TGATCA 1 cut(s) 496
KspAI GTTAAC 1 cut(s) 381
Kzo9I GATC 4 cut(s) 127, 397, 409, 496
LguI GCTCTTC 1 cut(s) 309
LmnI GCTCC 1 cut(s) 571
LpnPI CCDG 7 cut(s) 117, 125, 168, 262, 299, 357, 540
Lsp1109I GCAGC 2 cut(s) 200, 420
MaeI CTAG 1 cut(s) 92
MaeIII GTNAC 2 cut(s) 202, 239
MalI GATC 4 cut(s) 129, 399, 411, 498
MbiI CCGCTC 1 cut(s) 456
MboI GATC 4 cut(s) 127, 397, 409, 496
MboII GAAGA 6 cut(s) 17, 65, 122, 296, 419, 490
MflI RGATCY 2 cut(s) 127, 409
MhlI GDGCHC 1 cut(s) 147
MluCI AATT 3 cut(s) 180, 447, 606
MlyI GAGTC 2 cut(s) 7, 591
MnlI CCTC 5 cut(s) 256, 372, 543, 551, 558
MroXI GAANNNNTTC 1 cut(s) 351
MseI TTAA 5 cut(s) 51, 209, 234, 380, 614
Mva1269I GAATGC 1 cut(s) 251
NdeII GATC 4 cut(s) 127, 397, 409, 496
NlaIII CATG 3 cut(s) 49, 320, 475
NmeAIII GCCGAG 1 cut(s) 605
NmuCI GTSAC 2 cut(s) 202, 239
PciSI GCTCTTC 1 cut(s) 309
PctI GAATGC 1 cut(s) 251
PdmI GAANNNNTTC 1 cut(s) 351
PkrI GCNGC 2 cut(s) 215, 435
PleI GAGTC 2 cut(s) 7, 590
PpsI GAGTC 2 cut(s) 7, 590
PspFI CCCAGC 1 cut(s) 154
PsuI RGATCY 2 cut(s) 127, 409
SapI GCTCTTC 1 cut(s) 309
SaqAI TTAA 5 cut(s) 51, 209, 234, 380, 614
SatI GCNGC 2 cut(s) 214, 434
Sau3AI GATC 4 cut(s) 127, 397, 409, 496
SchI GAGTC 2 cut(s) 7, 591
SduI GDGCHC 1 cut(s) 147
SfcI CTRYAG 1 cut(s) 538
SmlI CTYRAG 1 cut(s) 442
SmoI CTYRAG 1 cut(s) 442
SpeI ACTAGT 1 cut(s) 91
Sse9I AATT 3 cut(s) 180, 447, 606
SsiI CCGC 2 cut(s) 79, 456
SspMI CTAG 1 cut(s) 92
TaqI TCGA 1 cut(s) 591
TasI AATT 3 cut(s) 180, 447, 606
Tru1I TTAA 5 cut(s) 51, 209, 234, 380, 614
Tru9I TTAA 5 cut(s) 51, 209, 234, 380, 614
TseFI GTSAC 2 cut(s) 202, 239
TseI GCWGC 2 cut(s) 213, 433
Tsp45I GTSAC 2 cut(s) 202, 239
TspDTI ATGAA 2 cut(s) 305, 460
XapI RAATTY 2 cut(s) 180, 447
XmiI GTMKAC 1 cut(s) 523
XmnI GAANNNNTTC 1 cut(s) 351
XspI CTAG 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.