Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000069

Physical Location & Seq

Genomic Coordinates Reverse (-)

10049080 .. 10052985

Gene Structure 3906 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36691

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2718 bp

ATGACTGAGGCTGTTGTTTCTTTTCTCGTGGAAAGAGTTGGTGACTTCATCATTCAAGAAGGCAGATCCTTGTCCGGAGTTGGGGATCAAGTTAGGCGAGCACACAGAGACCTACTATTCATCAGGGGCTTCCTCAAAGATGCAGACGCAAAGCGACGAGATAGTGAGGCAATACGCATTTTTGTTGCCGAAATTAGAGATGCTGCTTATGATTTGGAGGATGTCATTGAAGCTTTTGTCTTGAAGGTGGATTCCAAGAGGAAAGGAGGTATAAAGAATGTTTTGAAGAGGTTGGGGTGCATCTTCGTTGAAGGAGTTCGCCGTTACAAGATTGGGTCAGAAATTGGGGTAATTACTATCACGATTTCTGATTTGAAGCAGAACTTGCAAACTTATGGTATCAAGGAGATAAGGGATTCCTCTACTTCCCTCCAATTGTGTGAAGGACAACAACTACTGAGGCGAACTTACACTCATGTTATTGATCGTAATGTGGTCGGGCTAGAGGATTCCGTCCATGAATTGGTTGGGCATTTGGTGAAGGAAGAGCATCGCCACCGAGTTGTTTCTATTATTGGGATGGGCGGATCTGGGAAGACAACTATTGCTAAACAAGTTTATCATCACAAAGAGGTAACAGACCATTTTGATTGTTTGGCTTGGGTTTGTATATCTCAACAATATCAAGTCAGGGATGTCTTGGAGAGGATATATGTCAAACTTATTTCCCCTACAAAAGAGGAGAGAGAAGAAATCAAAAATTTGAAGGATGACGAAATACCAGGGAGGCTTTCTCAGGCCTGGGACTTTTTGAAGGCTGCATTTGAATGCCATGAAGACTCAAAGAGCAGGATACTACTTACGACACGCAATGAACAAGTAGCTTCGCATGCCGATGAGAGCGGTTTTCACTACCGACCTCCACCACTGAATGAGTCTGAGAGTTGGAAGCTGTTTGAGAAGATTGCAATGAGTGCTGAAGTTTACACGAAGATGGAAGAATTAGGAAAAGAGATGGTTCAACATTGTAAGGGTCTGCCACTAGCTATCATTGTACTTGCTGGACTTCTTGCTAGAAAAAACACAATTAAAGATTGGATAAACATACAAGAAAATGTTGGTGTTTACATAAGTAGAGGTTTTGGTCGCCAGGAAGAAGAACATGCATATGCATCATGGGTGTTGGCGTTGAGTTATGATGACTTGCCGTATCACTTAAAACCGTGTTTCCTATATTTAGGACATTTTCCAGAGGATCATGAGATCCAGGTGAAGAGTTTGACAAGATTATGGATCGCAGAAGGTTTTATCTTTTTGACACAACAAAGACAAGGTTCAAGGGAAACAATGGAGGATGTGGCATACAATTGGTTGAATGAGTTGGTAGAAAGGTGTGTGATTCAAGTAGGAGAGAGAAGTTCAACTCTTGAGAAAATTAAAAGTTGCCGGATGCATGATCTTTTGCGAGATTTGTGTTTGAGGAAGGCGGAAGAGGAAAATTTTCTCCAAGTTGTCAAAGGTTCCCATAAAAATGAGGCAATGCATCCCGTTTCTTCTTCCATGGTAACCATTGTATCACCTATGGGTAAGATTCGAAGACTTGCCATCTACTTGGATGAGAATGATGATAAATTGGTACCCTCAAGAGAGGAAAGAGGTGGGCAGCTTAGGTCTTTGTTATATTTTGGCCCCAGTGATTATAATTGGTTTCCTAAACAGAAAGAATTAATACCTTCCATGTTCAAGGATTTCAAATTACTCAGAGTGTTGAGGATTGAAGGTATGAATGATGGAGCAGTAAAAATAGAGCTGCCTAGAGAAATTGGAAACATGGTCCACTTGAGGAAACTTGATTGTTTGCAGACACTTGATTTCCGTGTTACAGATGACGACATGTTTATCCCAAATGTGATATGCAAGATGAATAAATTGAGACATTTATACCTTCCACGGAGGTACAGGGCTAGAGGTAAACTGCAGCTATCTACTCTCGGTGATTTGCTAACTTTAAATTCTATTTCGAGTAGACATTGTGATTTGAATGATCTTGCTAAACTAGGCAATCTAAGGAAATTGAGAATAAGATTGTCATCTAGCCAATCGAAAAATCTGGAGAAAATCTTGGATGCGGCAGGCTGCGTGGTCAATGGTATTCGGTCCCTGTGGTTGCACAACGAGGTTGGAATGGAAAGCGGTGCAGAGGTTAGTCAAATAGTTGCAAGGTGCGGTCAAATATACAAGTTGAAGCTGATTGGGCCCACACTAGAACTACCGAAAGAGTTCCACTCCTATTCAAACCTCACCAAGTTACTTTTGGCCGGATGTGCTCTCAAGGACGACCAAATGGCCGTACTAGAGAAGCTGCCCAACCTGAAAAGTCTTCAACTGTGGTTTAATGTGTTTGAGGAAAATACAAAAGTATTGGTTTTCTCCGTTGGAAGCTTTCCTCGTCTTCAGTTTCTTAGACTTGTGACTTTGCAAGGAATAACGGAGTGGAGGGTGGAGGAAGGAGCCATGCCTTGTCTCTGCAAATTGGTCATTAGTCATTGCACAGAATTGAGTACGGTTCCAGATGGGCTGAGACACCGTACTACCCTCAAGGAATTGAAGATTTGGAATATGCCTAAACTATTCTGTAGTAAGCTTGAGGAAGGAGGAGAAGACTTCCATAAAGTCCAACACATCCCTTCCCTTATAATCCAGAATCCGAATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0002230 GO:0002238 GO:0002239 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009615 GO:0009620 GO:0009626 GO:0009628 GO:0009637 GO:0009642 GO:0009646 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0012501 GO:0014070 GO:0016020 GO:0023052 GO:0030054 GO:0031347 GO:0032101 GO:0032870 GO:0033554 GO:0034050 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0043207 GO:0043900 GO:0044464 GO:0045087 GO:0046677 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071944 GO:0080134 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

905

Amino Acids

103.82

Weight (kDa)

8.22

Isoelectric Point (pI)

45.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	5 - 88	2.3e-20	Rx N-terminal domain
NB-ARC	PF00931	169 - 327	4.8e-28	NB-ARC domain
WHD_DRP	PF23559	416 - 492	4.4e-20	Disease resistance protein Winged helix domain
LRR_14	PF23598	583 - 871	1.9e-24	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G50180 AT1G53350 AT1G58390 AT1G58390 AT1G58400 AT1G58400 AT1G58400 AT1G58410 AT1G58410 AT1G58410 AT1G58410 AT1G58602 AT1G58602 AT1G58807 AT1G58807 AT1G58848 AT1G58848 AT1G59124 AT1G59124 AT1G59218 AT1G59218 AT1G59218 AT1G59620 AT1G59780 AT1G59780 AT5G35450 AT5G35450 AT5G43470 AT5G43470 AT5G43470 AT5G43470 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620
fragaria_vesca	FvH4_4g04072 FvH4_4g22931 FvH4_4g22931 FvH4_4g22940 FvH4_6g49940 FvH4_6g49940 FvH4_7g08100 FvH4_7g08870 FvH4_7g08870 FvH4_7g09280 FvH4_7g09290 FvH4_7g15190 FvH4_7g15200 FvH4_7g15240 FvH4_7g15240 FvH4_7g33440
malus_domestica	MD00G1174600.v1.1 MD01G1113700.v1.1 MD03G1071300.v1.1 MD04G1041500.v1.1 MD04G1238000.v1.1 MD07G1029000.v1.1 MD07G1092100.v1.1 MD07G1092300.v1.1 MD07G1092600.v1.1 MD12G1256300.v1.1 MD13G1128200.v1.1 MD13G1128400.v1.1 MD17G1268000.v1.1
prunus_persica	Prupe.1G041300_v2.0.a1 Prupe.1G041300_v2.0.a1 Prupe.1G042900_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043600_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G046700_v2.0.a1 Prupe.1G047700_v2.0.a1 Prupe.1G047900_v2.0.a1 Prupe.1G048000_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G049900_v2.0.a1 Prupe.1G051500_v2.0.a1 Prupe.1G051800_v2.0.a1 Prupe.1G051900_v2.0.a1 Prupe.1G052200_v2.0.a1 Prupe.1G194900_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117300_v2.0.a1 Prupe.2G117400_v2.0.a1 Prupe.2G117500_v2.0.a1 Prupe.2G117700_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G119900_v2.0.a1
pyrus_communis	pycom03g05750 pycom04g21110 pycom07g07530 pycom07g07590 pycom13g11110 pycom13g11140 pycom13g11160 pycom13g11170 pycom17g26680
rosa_chinensis	RchiOBHm_Chr1g0341231 RchiOBHm_Chr1g0344091 RchiOBHm_Chr1g0344161 RchiOBHm_Chr1g0345001 RchiOBHm_Chr1g0345351 RchiOBHm_Chr1g0345371 RchiOBHm_Chr1g0345391 RchiOBHm_Chr1g0345531 RchiOBHm_Chr1g0345551 RchiOBHm_Chr1g0345571 RchiOBHm_Chr1g0345581 RchiOBHm_Chr1g0345661 RchiOBHm_Chr1g0345691 RchiOBHm_Chr1g0345761 RchiOBHm_Chr1g0345791 RchiOBHm_Chr1g0345821 RchiOBHm_Chr1g0345911 RchiOBHm_Chr1g0345941 RchiOBHm_Chr1g0357611 RchiOBHm_Chr1g0357911 RchiOBHm_Chr1g0357921 RchiOBHm_Chr1g0357931 RchiOBHm_Chr1g0357971 RchiOBHm_Chr1g0358121 RchiOBHm_Chr1g0383491 RchiOBHm_Chr1g0383511 RchiOBHm_Chr1g0383521 RchiOBHm_Chr3g0480581 RchiOBHm_Chr4g0394341 RchiOBHm_Chr4g0394361 RchiOBHm_Chr4g0394411 RchiOBHm_Chr4g0394441 RchiOBHm_Chr4g0407681 RchiOBHm_Chr4g0429191 RchiOBHm_Chr4g0429201 RchiOBHm_Chr4g0429211 RchiOBHm_Chr4g0429221 RchiOBHm_Chr6g0265091
rosa_laevigata	RLG00000007088 RLG00000008700 RLG00000009190 RLG00000009702 RLG00000014210 RLG00000028829 RLG00000028833 RLG00000028837 RLG00000028838 RLG00000028921 RLG00000028926
rosa_multiflora	Rmu_co8366955.1_g000001 Rmu_co8394205.1_g000001 Rmu_sc0000019.1_g000001 Rmu_sc0000054.1_g000031 Rmu_sc0000054.1_g000033 Rmu_sc0000200.1_g000002 Rmu_sc0000200.1_g000007 Rmu_sc0000200.1_g000018 Rmu_sc0000200.1_g000020 Rmu_sc0000200.1_g000021 Rmu_sc0000251.1_g000012 Rmu_sc0000251.1_g000015 Rmu_sc0000251.1_g000028 Rmu_sc0000253.1_g000015 Rmu_sc0000255.1_g000045 Rmu_sc0000255.1_g000046 Rmu_sc0001292.1_g000013 Rmu_sc0001292.1_g000018 Rmu_sc0001292.1_g000028 Rmu_sc0001292.1_g000029 Rmu_sc0001349.1_g000006 Rmu_sc0001349.1_g000014 Rmu_sc0001582.1_g000006 Rmu_sc0001582.1_g000018 Rmu_sc0001582.1_g000020 Rmu_sc0001692.1_g000007 Rmu_sc0001692.1_g000024 Rmu_sc0001692.1_g000026 Rmu_sc0001692.1_g000029 Rmu_sc0001692.1_g000030 Rmu_sc0001835.1_g000006 Rmu_sc0001835.1_g000010 Rmu_sc0002071.1_g000005 Rmu_sc0002276.1_g000002 Rmu_sc0002276.1_g000009 Rmu_sc0002329.1_g000018 Rmu_sc0002329.1_g000023 Rmu_sc0002329.1_g000025 Rmu_sc0002523.1_g000005 Rmu_sc0003573.1_g000005 Rmu_sc0003573.1_g000006 Rmu_sc0004099.1_g000021 Rmu_sc0005812.1_g000009 Rmu_sc0006271.1_g000002 Rmu_sc0006287.1_g000038 Rmu_sc0006439.1_g000008 Rmu_sc0007456.1_g000004 Rmu_sc0007581.1_g000009 Rmu_sc0007849.1_g000014 Rmu_sc0008115.1_g000012 Rmu_sc0010521.1_g000004 Rmu_sc0012471.1_g000017 Rmu_sc0014762.1_g000001 Rmu_sc0015150.1_g000003 Rmu_sc0017221.1_g000001 Rmu_sc0017299.1_g000001 Rmu_sc0017299.1_g000002 Rmu_sc0021457.1_g000001 Rmu_sc0022067.1_g000001 Rmu_sc0033275.1_g000001 Rmu_ssc0000245.1_g000012 Rmu_ssc0000359.1_g000035 Rmu_ssc0000359.1_g000067 Rmu_ssc0000359.1_g000072 Rmu_ssc0000434.1_g000005 Rmu_ssc0000434.1_g000007
rosa_roxburghii	Rroxscaffold_4G00298420 Rroxscaffold_4G00298720 Rroxscaffold_4G00308990 Rroxscaffold_4G00309000 Rroxscaffold_4G00309010 Rroxscaffold_4G00309050 Rroxscaffold_4G00309070 Rroxscaffold_4G00309100 Rroxscaffold_4G00310030 Rroxscaffold_4G00310050 Rroxscaffold_4G00311880 Rroxscaffold_5G00339420 Rroxscaffold_5G00339450 Rroxscaffold_5G00344880 Rroxscaffold_5G00352270 Rroxscaffold_5G00362240 Rroxscaffold_5G00370840 Rroxscaffold_7G00202970
rosa_rugosa	Rorug01G0159100.1 Rorug01G0159200.1 Rorug01G0171700 Rorug01G0171900 Rorug01G0172000 Rorug01G0191700 Rorug01G0191800 Rorug01G0256900 Rorug01G0257000 Rorug01G0257100 Rorug03G0198000 Rorug03G0366300.1 Rorug03G0366400.1 Rorug03G0366500.1 Rorug04G0081200 Rorug04G0081200 Rorug04G0081200 Rorug04G0233700 Rorug04G0233800 Rorug04G0233800 Rorug06G0013300
rosa_samantha	Rh1CG138800 Rh1CG161300 Rh1CG173800 Rh1CG179800 Rh1CG180100 Rh1CG180500 Rh1CG180800 Rh1CG180900 Rh1CG194100 Rh1DG205100 Rh3AG236300 Rh4AG052000 Rh4AG052100 Rh4AG145900 Rh4AG289700 Rh4AG289800 Rh6AG136800 Rh6AG137300 Rh6BG133600 Rh6CG132000 Rh6CG134000 Rh6DG119300
rosa_wichuraiana	Rw0G003420 Rw1G015500 Rw1G016110 Rw1G016180 Rw1G016210 Rw1G016230 Rw1G016280 Rw1G016440 Rw1G016450 Rw1G016460 Rw1G016480 Rw1G017490 Rw1G024140 Rw1G024160 Rw3G022530 Rw4G004140 Rw4G004190 Rw4G011850 Rw6G011800

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1701, 2696
Acc65I	GGTACC	1 cut(s)	1636
AccB1I	GGYRCC	1 cut(s)	1636
AccB7I	CCANNNNNTGG	1 cut(s)	523
AccBSI	CCGCTC	1 cut(s)	903
AccI	GTMKAC	1 cut(s)	2026
AccIII	TCCGGA	1 cut(s)	74
AciI	CCGC	6 cut(s)	585, 903, 1487, 2129, 2193, 2226
AclWI	GGATC	6 cut(s)	60, 93, 595, 1258, 1263, 1301
AcoI	YGGCCR	2 cut(s)	2316, 2346
AcsI	RAATTY	3 cut(s)	760, 1498, 2011
AcuI	CTGAAG	2 cut(s)	999, 2438
AfaI	GTAC	6 cut(s)	1056, 1638, 1958, 2352, 2563, 2590
AfiI	CCNNNNNNNGG	2 cut(s)	81, 523
AflIII	ACRYGT	1 cut(s)	1893
AjnI	CCWGG	4 cut(s)	781, 800, 1149, 1266
Alw21I	GWGCWC	2 cut(s)	103, 2329
Alw26I	GTCTC	4 cut(s)	102, 1927, 2528, 2575
AlwI	GGATC	6 cut(s)	60, 93, 595, 1258, 1263, 1301
Aor13HI	TCCGGA	1 cut(s)	74
AoxI	GGCC	5 cut(s)	798, 1687, 2255, 2316, 2346
ApaI	GGGCCC	1 cut(s)	2259
ApeKI	GCWGC	7 cut(s)	203, 818, 1663, 1810, 1978, 2136, 2362
ApoI	RAATTY	3 cut(s)	760, 1498, 2011
AseI	ATTAAT	1 cut(s)	1727
Asp700I	GAANNNNTTC	3 cut(s)	315, 1500, 2279
Asp718I	GGTACC	1 cut(s)	1636
AspS9I	GGNCC	5 cut(s)	1688, 1834, 2157, 2255, 2256
AsuHPI	GGTGA	6 cut(s)	53, 550, 1282, 1569, 2006, 2293
AsuII	TTCGAA	1 cut(s)	1594
AvaII	GGWCC	2 cut(s)	1834, 2157
BaeGI	GKGCMC	1 cut(s)	2259
BaeI	ACNNNNGTAYC	2 cut(s)	1557, 1590
BanI	GGYRCC	1 cut(s)	1636
BanII	GRGCYC	1 cut(s)	2259
BauI	CACGAG	1 cut(s)	26
BbsI	GAAGAC	6 cut(s)	602, 843, 1603, 2372, 2444, 2667
Bbv12I	GWGCWC	2 cut(s)	103, 2329
BbvI	GCAGC	7 cut(s)	190, 805, 1675, 1797, 1990, 2123, 2349
BccI	CCATC	6 cut(s)	574, 988, 1009, 1613, 1784, 2567
BceAI	ACGGC	3 cut(s)	306, 1192, 2333
BciT130I	CCWGG	4 cut(s)	783, 802, 1151, 1268
BciVI	GTATCC	1 cut(s)	846
BcoDI	GTCTC	4 cut(s)	102, 1927, 2528, 2575
BfaI	CTAG	9 cut(s)	503, 1043, 1074, 1815, 1965, 2057, 2094, 2264, 2354
BfmI	CTRYAG	2 cut(s)	1976, 2635
BfuI	GTATCC	1 cut(s)	846
BisI	GCNGC	8 cut(s)	204, 819, 1664, 1811, 1979, 2130, 2137, 2363
BlsI	GCNGC	8 cut(s)	205, 820, 1665, 1812, 1980, 2131, 2138, 2364
Bme1390I	CCNGG	4 cut(s)	783, 802, 1151, 1268
Bme18I	GGWCC	2 cut(s)	1834, 2157
BmgT120I	GGNCC	5 cut(s)	1688, 1834, 2157, 2255, 2256
BmiI	GGNNCC	7 cut(s)	1522, 1638, 1690, 2159, 2257, 2512, 2568
BmrFI	CCNGG	4 cut(s)	783, 802, 1151, 1268
BmrI	ACTGGG	1 cut(s)	1686
BmsI	GCATC	8 cut(s)	130, 190, 309, 559, 1181, 1440, 1552, 2116
BmuI	ACTGGG	1 cut(s)	1686
BpiI	GAAGAC	6 cut(s)	602, 843, 1603, 2372, 2444, 2667
BplI	GAGNNNNNCTC	4 cut(s)	778, 810, 2270, 2302
BpmI	CTGGAG	1 cut(s)	2132
Bpu10I	CCTNAGC	1 cut(s)	1667
Bpu14I	TTCGAA	1 cut(s)	1594
BpuEI	CTTGAG	6 cut(s)	1448, 1627, 1861, 2315, 2582, 2666
BsaBI	GATNNNNATC	1 cut(s)	2089
BsaI	GGTCTC	1 cut(s)	102
BsaJI	CCNNGG	4 cut(s)	782, 801, 1560, 1949
BsaWI	WCCGGW	1 cut(s)	74
Bsc4I	CCNNNNNNNGG	2 cut(s)	81, 523
Bse1I	ACTGG	1 cut(s)	1692
Bse3DI	GCAATG	4 cut(s)	877, 975, 1545, 2545
Bse8I	GATNNNNATC	1 cut(s)	2089
BseAI	TCCGGA	1 cut(s)	74
BseBI	CCWGG	4 cut(s)	783, 802, 1151, 1268
BseDI	CCNNGG	4 cut(s)	782, 801, 1560, 1949
BseJI	GATNNNNATC	1 cut(s)	2089
BseLI	CCNNNNNNNGG	2 cut(s)	81, 523
BseMI	GCAATG	4 cut(s)	877, 975, 1545, 2545
BseMII	CTCAG	5 cut(s)	449, 809, 930, 1774, 2570
BseNI	ACTGG	1 cut(s)	1692
BseRI	GAGGAG	2 cut(s)	755, 2670
BseSI	GKGCMC	1 cut(s)	2259
BseXI	GCAGC	7 cut(s)	190, 805, 1675, 1797, 1990, 2123, 2349
BsgI	GTGCAG	1 cut(s)	2217
BshFI	GGCC	5 cut(s)	800, 1689, 2257, 2318, 2348
BshNI	GGYRCC	1 cut(s)	1636
BsiHKAI	GWGCWC	2 cut(s)	103, 2329
BsiSI	CCGG	3 cut(s)	75, 1447, 2319
BslFI	GGGAC	2 cut(s)	818, 2143
BslI	CCNNNNNNNGG	2 cut(s)	81, 523
BsmAI	GTCTC	4 cut(s)	102, 1927, 2528, 2575
BsmFI	GGGAC	2 cut(s)	818, 2143
BsmI	GAATGC	1 cut(s)	833
BsnI	GGCC	5 cut(s)	800, 1689, 2257, 2318, 2348
Bso31I	GGTCTC	1 cut(s)	102
Bsp119I	TTCGAA	1 cut(s)	1594
Bsp120I	GGGCCC	1 cut(s)	2255
Bsp1286I	GDGCHC	3 cut(s)	103, 2259, 2329
Bsp13I	TCCGGA	1 cut(s)	74
Bsp143I	GATC	9 cut(s)	65, 85, 484, 587, 1255, 1263, 1293, 1456, 2044
Bsp19I	CCATGG	1 cut(s)	1560
BspACI	CCGC	6 cut(s)	585, 903, 1487, 2129, 2193, 2226
BspANI	GGCC	5 cut(s)	800, 1689, 2257, 2318, 2348
BspCNI	CTCAG	5 cut(s)	450, 808, 931, 1773, 2571
BspEI	TCCGGA	1 cut(s)	74
BspHI	TCATGA	1 cut(s)	1258
BspLI	GGNNCC	7 cut(s)	1522, 1638, 1690, 2159, 2257, 2512, 2568
BspMAI	CTGCAG	1 cut(s)	1980
BspPI	GGATC	6 cut(s)	60, 93, 595, 1258, 1263, 1301
BspQI	GCTCTTC	1 cut(s)	540
BspT104I	TTCGAA	1 cut(s)	1594
BspT107I	GGYRCC	1 cut(s)	1636
BspTNI	GGTCTC	1 cut(s)	102
BsrBI	CCGCTC	1 cut(s)	903
BsrDI	GCAATG	4 cut(s)	877, 975, 1545, 2545
BsrI	ACTGG	1 cut(s)	1692
BssECI	CCNNGG	4 cut(s)	782, 801, 1560, 1949
BssMI	GATC	9 cut(s)	65, 85, 484, 587, 1255, 1263, 1293, 1456, 2044
BssSI	CACGAG	1 cut(s)	26
BssT1I	CCWWGG	1 cut(s)	1560
Bst2BI	CACGAG	1 cut(s)	26
Bst2UI	CCWGG	4 cut(s)	783, 802, 1151, 1268
Bst4CI	ACNGT	4 cut(s)	1224, 2388, 2566, 2588
Bst6I	CTCTTC	4 cut(s)	281, 540, 1268, 1485
BstAPI	GCANNNNNTGC	2 cut(s)	385, 974
BstBI	TTCGAA	1 cut(s)	1594
BstC8I	GCNNGC	3 cut(s)	99, 891, 2134
BstDEI	CTNAG	9 cut(s)	6, 458, 795, 939, 1667, 1760, 2066, 2462, 2579
BstDSI	CCRYGG	2 cut(s)	1560, 1949
BstEII	GGTNACC	1 cut(s)	1564
BstKTI	GATC	9 cut(s)	68, 88, 487, 590, 1258, 1266, 1296, 1459, 2047
BstMAI	GTCTC	4 cut(s)	102, 1927, 2528, 2575
BstMBI	GATC	9 cut(s)	65, 85, 484, 587, 1255, 1263, 1293, 1456, 2044
BstMWI	GCNNNNNNNGC	5 cut(s)	385, 890, 974, 2254, 2324
BstNI	CCWGG	4 cut(s)	783, 802, 1151, 1268
BstNSI	RCATGY	3 cut(s)	893, 1166, 1897
BstPI	GGTNACC	1 cut(s)	1564
BstSCI	CCNGG	4 cut(s)	781, 800, 1149, 1266
BstSFI	CTRYAG	2 cut(s)	1976, 2635
BstSLI	GKGCMC	1 cut(s)	2259
BstV1I	GCAGC	7 cut(s)	190, 805, 1675, 1797, 1990, 2123, 2349
BstV2I	GAAGAC	6 cut(s)	602, 843, 1603, 2372, 2444, 2667
BstX2I	RGATCY	3 cut(s)	65, 587, 1263
BstXI	CCANNNNNNTGG	1 cut(s)	1612
BstYI	RGATCY	3 cut(s)	65, 587, 1263
BsuI	GTATCC	1 cut(s)	846
BsuRI	GGCC	5 cut(s)	800, 1689, 2257, 2318, 2348
BtgI	CCRYGG	2 cut(s)	1560, 1949
BtgZI	GCGATG	1 cut(s)	536
BtsIMutI	CAGTG	2 cut(s)	926, 1699
Cac8I	GCNNGC	3 cut(s)	99, 891, 2134
CciI	TCATGA	1 cut(s)	1258
Cfr13I	GGNCC	5 cut(s)	1688, 1834, 2157, 2255, 2256
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	6 cut(s)	1055, 1637, 1957, 2351, 2562, 2589
CviQI	GTAC	6 cut(s)	1055, 1637, 1957, 2351, 2562, 2589
DdeI	CTNAG	9 cut(s)	6, 458, 795, 939, 1667, 1760, 2066, 2462, 2579
DpnI	GATC	9 cut(s)	67, 87, 486, 589, 1257, 1265, 1295, 1458, 2046
DpnII	GATC	9 cut(s)	65, 85, 484, 587, 1255, 1263, 1293, 1456, 2044
DraI	TTTAAA	1 cut(s)	2010
EaeI	YGGCCR	2 cut(s)	2316, 2346
Eam1104I	CTCTTC	4 cut(s)	281, 540, 1268, 1485
EarI	CTCTTC	4 cut(s)	281, 540, 1268, 1485
EciI	GGCGGA	2 cut(s)	600, 1502
Eco130I	CCWWGG	1 cut(s)	1560
Eco147I	AGGCCT	1 cut(s)	800
Eco24I	GRGCYC	1 cut(s)	2259
Eco31I	GGTCTC	1 cut(s)	102
Eco47I	GGWCC	2 cut(s)	1834, 2157
Eco57I	CTGAAG	2 cut(s)	999, 2438
Eco91I	GGTNACC	1 cut(s)	1564
EcoO65I	GGTNACC	1 cut(s)	1564
EcoRII	CCWGG	4 cut(s)	781, 800, 1149, 1266
EcoT14I	CCWWGG	1 cut(s)	1560
EcoT22I	ATGCAT	4 cut(s)	1168, 1174, 1455, 1545
EcoT38I	GRGCYC	1 cut(s)	2259
ErhI	CCWWGG	1 cut(s)	1560
FalI	AAGNNNNNCTT	2 cut(s)	368, 400
FaqI	GGGAC	2 cut(s)	818, 2143
FauNDI	CATATG	1 cut(s)	1168
FblI	GTMKAC	1 cut(s)	2026
Fnu4HI	GCNGC	8 cut(s)	204, 819, 1664, 1811, 1979, 2130, 2137, 2363
FriOI	GRGCYC	1 cut(s)	2259
Fsp4HI	GCNGC	8 cut(s)	204, 819, 1664, 1811, 1979, 2130, 2137, 2363
FspBI	CTAG	9 cut(s)	503, 1043, 1074, 1815, 1965, 2057, 2094, 2264, 2354
GluI	GCNGC	8 cut(s)	204, 819, 1664, 1811, 1979, 2130, 2137, 2363
GsuI	CTGGAG	1 cut(s)	2132
HaeIII	GGCC	5 cut(s)	800, 1689, 2257, 2318, 2348
HapII	CCGG	3 cut(s)	75, 1447, 2319
HgaI	GACGC	1 cut(s)	155
HindIII	AAGCTT	3 cut(s)	231, 2440, 2642
HinfI	GANTC	8 cut(s)	251, 416, 509, 839, 935, 1399, 1591, 2704
HpaII	CCGG	3 cut(s)	75, 1447, 2319
HphI	GGTGA	6 cut(s)	53, 550, 1282, 1569, 2006, 2293
Hpy166II	GTNNAC	5 cut(s)	985, 1126, 1837, 1973, 2027
Hpy188I	TCNGA	5 cut(s)	340, 370, 940, 1763, 2709
Hpy8I	GTNNAC	5 cut(s)	985, 1126, 1837, 1973, 2027
Hpy99I	CGWCG	1 cut(s)	159
HpyCH4III	ACNGT	4 cut(s)	1224, 2388, 2566, 2588
HpyF10VI	GCNNNNNNNGC	5 cut(s)	385, 890, 974, 2254, 2324
HpyF3I	CTNAG	9 cut(s)	6, 458, 795, 939, 1667, 1760, 2066, 2462, 2579
Kpn2I	TCCGGA	1 cut(s)	74
KpnI	GGTACC	1 cut(s)	1640
Kzo9I	GATC	9 cut(s)	65, 85, 484, 587, 1255, 1263, 1293, 1456, 2044
LguI	GCTCTTC	1 cut(s)	540
LmnI	GCTCC	2 cut(s)	1793, 2510
Lsp1109I	GCAGC	7 cut(s)	190, 805, 1675, 1797, 1990, 2123, 2349
LweI	GCATC	8 cut(s)	130, 190, 309, 559, 1181, 1440, 1552, 2116
MaeI	CTAG	9 cut(s)	503, 1043, 1074, 1815, 1965, 2057, 2094, 2264, 2354
MaeIII	GTNAC	7 cut(s)	41, 323, 634, 1564, 1879, 2307, 2470
MalI	GATC	9 cut(s)	67, 87, 486, 589, 1257, 1265, 1295, 1458, 2046
MbiI	CCGCTC	1 cut(s)	903
MboI	GATC	9 cut(s)	65, 85, 484, 587, 1255, 1263, 1293, 1456, 2044
MfeI	CAATTG	2 cut(s)	434, 1366
MflI	RGATCY	3 cut(s)	65, 587, 1263
MhlI	GDGCHC	3 cut(s)	103, 2259, 2329
MlyI	GAGTC	2 cut(s)	833, 944
MmeI	TCCRAC	4 cut(s)	926, 2161, 2416, 2701
Mph1103I	ATGCAT	4 cut(s)	1168, 1174, 1455, 1545
MroI	TCCGGA	1 cut(s)	74
MroXI	GAANNNNTTC	3 cut(s)	315, 1500, 2279
MseI	TTAA	7 cut(s)	1089, 1217, 1437, 1727, 2009, 2394, 2716
MslI	CAYNNNNRTG	5 cut(s)	826, 894, 992, 1167, 1530
MspI	CCGG	3 cut(s)	75, 1447, 2319
MspR9I	CCNGG	4 cut(s)	783, 802, 1151, 1268
MunI	CAATTG	2 cut(s)	434, 1366
Mva1269I	GAATGC	1 cut(s)	833
MvaI	CCWGG	4 cut(s)	783, 802, 1151, 1268
MwoI	GCNNNNNNNGC	5 cut(s)	385, 890, 974, 2254, 2324
NcoI	CCATGG	1 cut(s)	1560
NdeI	CATATG	1 cut(s)	1168
NdeII	GATC	9 cut(s)	65, 85, 484, 587, 1255, 1263, 1293, 1456, 2044
NlaIV	GGNNCC	7 cut(s)	1522, 1638, 1690, 2159, 2257, 2512, 2568
NmuCI	GTSAC	2 cut(s)	41, 2470
NsiI	ATGCAT	4 cut(s)	1168, 1174, 1455, 1545
NspI	RCATGY	3 cut(s)	893, 1166, 1897
NspV	TTCGAA	1 cut(s)	1594
PaeI	GCATGC	1 cut(s)	893
PagI	TCATGA	1 cut(s)	1258
PceI	AGGCCT	1 cut(s)	800
PciI	ACATGT	1 cut(s)	1893
PciSI	GCTCTTC	1 cut(s)	540
PctI	GAATGC	1 cut(s)	833
PdmI	GAANNNNTTC	3 cut(s)	315, 1500, 2279
PfeI	GAWTC	6 cut(s)	251, 416, 509, 1399, 1591, 2704
PflMI	CCANNNNNTGG	1 cut(s)	523
PkrI	GCNGC	8 cut(s)	205, 820, 1665, 1812, 1980, 2131, 2138, 2364
PleI	GAGTC	2 cut(s)	833, 943
PpsI	GAGTC	2 cut(s)	833, 943
PscI	ACATGT	1 cut(s)	1893
PshBI	ATTAAT	1 cut(s)	1727
PsiI	TTATAA	2 cut(s)	1701, 2696
Psp6I	CCWGG	4 cut(s)	781, 800, 1149, 1266
PspEI	GGTNACC	1 cut(s)	1564
PspGI	CCWGG	4 cut(s)	781, 800, 1149, 1266
PspN4I	GGNNCC	7 cut(s)	1522, 1638, 1690, 2159, 2257, 2512, 2568
PspOMI	GGGCCC	1 cut(s)	2255
PspPI	GGNCC	5 cut(s)	1688, 1834, 2157, 2255, 2256
PstI	CTGCAG	1 cut(s)	1980
PsuI	RGATCY	3 cut(s)	65, 587, 1263
RsaI	GTAC	6 cut(s)	1056, 1638, 1958, 2352, 2563, 2590
RsaNI	GTAC	6 cut(s)	1055, 1637, 1957, 2351, 2562, 2589
RseI	CAYNNNNRTG	5 cut(s)	826, 894, 992, 1167, 1530
SapI	GCTCTTC	1 cut(s)	540
SaqAI	TTAA	7 cut(s)	1089, 1217, 1437, 1727, 2009, 2394, 2716
SatI	GCNGC	8 cut(s)	204, 819, 1664, 1811, 1979, 2130, 2137, 2363
Sau3AI	GATC	9 cut(s)	65, 85, 484, 587, 1255, 1263, 1293, 1456, 2044
Sau96I	GGNCC	5 cut(s)	1688, 1834, 2157, 2255, 2256
SchI	GAGTC	2 cut(s)	833, 944
ScrFI	CCNGG	4 cut(s)	783, 802, 1151, 1268
SduI	GDGCHC	3 cut(s)	103, 2259, 2329
SfaNI	GCATC	8 cut(s)	130, 190, 309, 559, 1181, 1440, 1552, 2116
SfcI	CTRYAG	2 cut(s)	1976, 2635
SfuI	TTCGAA	1 cut(s)	1594
SinI	GGWCC	2 cut(s)	1834, 2157
SmiMI	CAYNNNNRTG	5 cut(s)	826, 894, 992, 1167, 1530
SmlI	CTYRAG	6 cut(s)	1427, 1642, 1840, 2330, 2597, 2645
SmoI	CTYRAG	6 cut(s)	1427, 1642, 1840, 2330, 2597, 2645
SphI	GCATGC	1 cut(s)	893
SseBI	AGGCCT	1 cut(s)	800
SsiI	CCGC	6 cut(s)	585, 903, 1487, 2129, 2193, 2226
SspMI	CTAG	9 cut(s)	503, 1043, 1074, 1815, 1965, 2057, 2094, 2264, 2354
StuI	AGGCCT	1 cut(s)	800
StyD4I	CCNGG	4 cut(s)	781, 800, 1149, 1266
StyI	CCWWGG	1 cut(s)	1560
TaaI	ACNGT	4 cut(s)	1224, 2388, 2566, 2588
TaqI	TCGA	3 cut(s)	1594, 2021, 2102
TaqII	GACCGA	1 cut(s)	2145
TatI	WGTACW	1 cut(s)	1054
TauI	GCSGC	1 cut(s)	2132
TfiI	GAWTC	6 cut(s)	251, 416, 509, 1399, 1591, 2704
Tru1I	TTAA	7 cut(s)	1089, 1217, 1437, 1727, 2009, 2394, 2716
Tru9I	TTAA	7 cut(s)	1089, 1217, 1437, 1727, 2009, 2394, 2716
TscAI	CASTG	2 cut(s)	933, 1699
TseFI	GTSAC	2 cut(s)	41, 2470
TseI	GCWGC	7 cut(s)	203, 818, 1663, 1810, 1978, 2136, 2362
Tsp45I	GTSAC	2 cut(s)	41, 2470
TspDTI	ATGAA	7 cut(s)	37, 109, 534, 849, 888, 1799, 1937
TspGWI	ACGGA	5 cut(s)	502, 1865, 1966, 2422, 2504
TspRI	CASTG	2 cut(s)	933, 1699
Van91I	CCANNNNNTGG	1 cut(s)	523
VpaK11BI	GGWCC	2 cut(s)	1834, 2157
VspI	ATTAAT	1 cut(s)	1727
XapI	RAATTY	3 cut(s)	760, 1498, 2011
XceI	RCATGY	3 cut(s)	893, 1166, 1897
XcmI	CCANNNNNNNNNTGG	2 cut(s)	524, 2311
XmiI	GTMKAC	1 cut(s)	2026
XmnI	GAANNNNTTC	3 cut(s)	315, 1500, 2279
XspI	CTAG	9 cut(s)	503, 1043, 1074, 1815, 1965, 2057, 2094, 2264, 2354
Zsp2I	ATGCAT	4 cut(s)	1168, 1174, 1455, 1545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.