Rroxscaffold_5G00344880

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
15037921 .. 15041991
4071 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00344880.1

Sequence Viewer

Length: 1947 bp
ATGGCTGAGGCTGTTGTTTCTTTTCTCGTGGAAAGAGTTGGTGACTACATCATTCAAGAAGGCAGATCCTTGTTCGGAGTTGGCAATCAAGTTAGGCGTGCACACAGAGACCTAGTATTCATCAAGGGCTTCCTCAAAGATGCAGACGCAAAGCGACGAGACAGTGAGGCAATACGCATTTTTGTTGCCGAAATTAGAGATGCTGCTTATGATTTGGAGGATGCCATTGAAGCTTTTGTCTTGAAGGTGGATTCCAGGAGGAAAGGAGGTATAAAGAATGTTTTGAAGAGGTTGAGGTGCATCTTCGTTGAAGGAGTTCGCCGTTACAAGATTGGGTCAGAAATTAGGGTTATTACTATCACGATTTCTGATTTGAAGCAGAACTTGCAAACTTACGGTATCAAGGAGATAAGGGATTCCTCTACTTCCCTCCAATTGTGTGAAGGACAACAACTACTGAGGCGAACTTACACTCATGTTATTGATCGTAATGTGGTCGGGCTAGAGGATTCTGTCCATGAATTGGTTGGGCATTTGGTGAAGGAAGAGCATCGCCACCGAGTTGTTTCTATTATTGGGATGGGCGGATCTGGGAAGACAACTATTGCTAAACAAGTTTATCATCACAAAGAGGTAACAGACCATTTTGATTGTTTGGCTTGGGTTTGTATATCTCAACAATATCAAGTCAGGGATGTCTTGGAGAGGATTTATGTCAAACTTCTTTGCCCCACAAAAGAGGAGAGGGATGAAATTGCAAAATTGAAGGATGACGAAATACCGGGAAGGCTTTCTCGTCTCCAAAATGAAAAAAAATGTTTGATTGTCCTTGATGACATTTGGAAAAGAGAGACCTGGGACTTTTTGAAGGCTGCATTTGAATGCCATGAAGACTCAAAGAGCAGGATACTAGTTACGACTCGCAATGAACAAGTAGCTTCGCATGCCGATGAGAACGGGGTTCACTACCGACCTCCACCACTAACTGAGTCTGAGAGTTGGGAGCTGTTTGAGAAGATTGCAATGAGTGGAAGGAAAGCTGGAATAGATGTTGAAGTTTACACGAATATGGAAGAATTAGGAAAGGAGATGGTTCAACATTGTAGGGGTCTGCCACTAGCTGTCATTGTTGTACTTGCTGGACTTCTTGCTAGGCTAGGAAAAACACAATTTAAAGATTGGGTAACCATAAAAGAAAATGTTGGTGTTTACATAAGTAGAGGCTTTGGCCTCCCGGAAGAAGAACATGCATATGTATCATGGGTGTTGGCGTTGAGTTATGATGACTTGCCGTATCACTTAAAACCTTGTTTCCTATATTTAGGACATTTTCCCGAGGATCATGAGATCCGGATGAAGAGTTTGACAAGACTATGGATTGCAGAAGGTTTTATTTCTTTGACAAAACAAAGACAAAGTTCAGGGGAAACAATGGAGGATGTGGCATACAATTGGTTGAATGAGTTGGTAGAAAGGTGTGTGATTCAAGTAGCAGAGAGAAGTTCAACTTTTGAGAATATTAAAACTTGTCGGATGCATGATCTTTTGCGAGATTTGTGTTTGTGGAAGGCGGAAGAGGAAAATTTTCTCCAAGTTGTCAAAGGTTCTCATAAAAATGAGGCAATGCATCCAGTTTCTTCTTCTTCCTCCATGGTAACCTATGTATCACCAACGGGTAAGATTCGAAGACTTGCTGTCTACTTGGATGAGAATGATGATAAATTGGTACCCTCACTTGGGGAAAGAGGTGGACACGTTAGGTCCTTGTTGTATTTTGGCCCCAACGATAATTATTGGTTTCTTAAAAGGAAAGAATTAATACCTTCCAGGTTCAAGGATTTCAAATTACTCGGAGCGTTGATGATTGAAGGTATGAATGATGGAAGAGTAAAAATAGAGCTGCCTAGAGAAATTGGAAAAATGGTCCACTTGAGGTTTCGAGTCTAA

Protein Analysis

648

Amino Acids

74.67

Weight (kDa)

7.32

Isoelectric Point (pI)

44.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 5 - 88 5.8e-19 Rx N-terminal domain
NB-ARC PF00931 169 - 344 5e-43 NB-ARC domain
WHD_DRP PF23559 444 - 520 1.3e-20 Disease resistance protein Winged helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000069)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G50180 AT1G53350 AT1G58390 AT1G58390 AT1G58400 AT1G58400 AT1G58400 AT1G58410 AT1G58410 AT1G58410 AT1G58410 AT1G58602 AT1G58602 AT1G58807 AT1G58807 AT1G58848 AT1G58848 AT1G59124 AT1G59124 AT1G59218 AT1G59218 AT1G59218 AT1G59620 AT1G59780 AT1G59780 AT5G35450 AT5G35450 AT5G43470 AT5G43470 AT5G43470 AT5G43470 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620
fragaria_vesca FvH4_4g04072 FvH4_4g22931 FvH4_4g22931 FvH4_4g22940 FvH4_6g49940 FvH4_6g49940 FvH4_7g08100 FvH4_7g08870 FvH4_7g08870 FvH4_7g09280 FvH4_7g09290 FvH4_7g15190 FvH4_7g15200 FvH4_7g15240 FvH4_7g15240 FvH4_7g33440
malus_domestica MD00G1174600.v1.1 MD01G1113700.v1.1 MD03G1071300.v1.1 MD04G1041500.v1.1 MD04G1238000.v1.1 MD07G1029000.v1.1 MD07G1092100.v1.1 MD07G1092300.v1.1 MD07G1092600.v1.1 MD12G1256300.v1.1 MD13G1128200.v1.1 MD13G1128400.v1.1 MD17G1268000.v1.1
prunus_persica Prupe.1G041300_v2.0.a1 Prupe.1G041300_v2.0.a1 Prupe.1G042900_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043600_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G046700_v2.0.a1 Prupe.1G047700_v2.0.a1 Prupe.1G047900_v2.0.a1 Prupe.1G048000_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G049900_v2.0.a1 Prupe.1G051500_v2.0.a1 Prupe.1G051800_v2.0.a1 Prupe.1G051900_v2.0.a1 Prupe.1G052200_v2.0.a1 Prupe.1G194900_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117300_v2.0.a1 Prupe.2G117400_v2.0.a1 Prupe.2G117500_v2.0.a1 Prupe.2G117700_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G119900_v2.0.a1
pyrus_communis pycom03g05750 pycom04g21110 pycom07g07530 pycom07g07590 pycom13g11110 pycom13g11140 pycom13g11160 pycom13g11170 pycom17g26680
rosa_chinensis RchiOBHm_Chr1g0341231 RchiOBHm_Chr1g0344091 RchiOBHm_Chr1g0344161 RchiOBHm_Chr1g0345001 RchiOBHm_Chr1g0345351 RchiOBHm_Chr1g0345371 RchiOBHm_Chr1g0345391 RchiOBHm_Chr1g0345531 RchiOBHm_Chr1g0345551 RchiOBHm_Chr1g0345571 RchiOBHm_Chr1g0345581 RchiOBHm_Chr1g0345661 RchiOBHm_Chr1g0345691 RchiOBHm_Chr1g0345761 RchiOBHm_Chr1g0345791 RchiOBHm_Chr1g0345821 RchiOBHm_Chr1g0345911 RchiOBHm_Chr1g0345941 RchiOBHm_Chr1g0357611 RchiOBHm_Chr1g0357911 RchiOBHm_Chr1g0357921 RchiOBHm_Chr1g0357931 RchiOBHm_Chr1g0357971 RchiOBHm_Chr1g0358121 RchiOBHm_Chr1g0383491 RchiOBHm_Chr1g0383511 RchiOBHm_Chr1g0383521 RchiOBHm_Chr3g0480581 RchiOBHm_Chr4g0394341 RchiOBHm_Chr4g0394361 RchiOBHm_Chr4g0394411 RchiOBHm_Chr4g0394441 RchiOBHm_Chr4g0407681 RchiOBHm_Chr4g0429191 RchiOBHm_Chr4g0429201 RchiOBHm_Chr4g0429211 RchiOBHm_Chr4g0429221 RchiOBHm_Chr6g0265091
rosa_laevigata RLG00000007088 RLG00000008700 RLG00000009190 RLG00000009702 RLG00000014210 RLG00000028829 RLG00000028833 RLG00000028837 RLG00000028838 RLG00000028921 RLG00000028926
rosa_multiflora Rmu_co8366955.1_g000001 Rmu_co8394205.1_g000001 Rmu_sc0000019.1_g000001 Rmu_sc0000054.1_g000031 Rmu_sc0000054.1_g000033 Rmu_sc0000200.1_g000002 Rmu_sc0000200.1_g000007 Rmu_sc0000200.1_g000018 Rmu_sc0000200.1_g000020 Rmu_sc0000200.1_g000021 Rmu_sc0000251.1_g000012 Rmu_sc0000251.1_g000015 Rmu_sc0000251.1_g000028 Rmu_sc0000253.1_g000015 Rmu_sc0000255.1_g000045 Rmu_sc0000255.1_g000046 Rmu_sc0001292.1_g000013 Rmu_sc0001292.1_g000018 Rmu_sc0001292.1_g000028 Rmu_sc0001292.1_g000029 Rmu_sc0001349.1_g000006 Rmu_sc0001349.1_g000014 Rmu_sc0001582.1_g000006 Rmu_sc0001582.1_g000018 Rmu_sc0001582.1_g000020 Rmu_sc0001692.1_g000007 Rmu_sc0001692.1_g000024 Rmu_sc0001692.1_g000026 Rmu_sc0001692.1_g000029 Rmu_sc0001692.1_g000030 Rmu_sc0001835.1_g000006 Rmu_sc0001835.1_g000010 Rmu_sc0002071.1_g000005 Rmu_sc0002276.1_g000002 Rmu_sc0002276.1_g000009 Rmu_sc0002329.1_g000018 Rmu_sc0002329.1_g000023 Rmu_sc0002329.1_g000025 Rmu_sc0002523.1_g000005 Rmu_sc0003573.1_g000005 Rmu_sc0003573.1_g000006 Rmu_sc0004099.1_g000021 Rmu_sc0005812.1_g000009 Rmu_sc0006271.1_g000002 Rmu_sc0006287.1_g000038 Rmu_sc0006439.1_g000008 Rmu_sc0007456.1_g000004 Rmu_sc0007581.1_g000009 Rmu_sc0007849.1_g000014 Rmu_sc0008115.1_g000012 Rmu_sc0010521.1_g000004 Rmu_sc0012471.1_g000017 Rmu_sc0014762.1_g000001 Rmu_sc0015150.1_g000003 Rmu_sc0017221.1_g000001 Rmu_sc0017299.1_g000001 Rmu_sc0017299.1_g000002 Rmu_sc0021457.1_g000001 Rmu_sc0022067.1_g000001 Rmu_sc0033275.1_g000001 Rmu_ssc0000245.1_g000012 Rmu_ssc0000359.1_g000035 Rmu_ssc0000359.1_g000067 Rmu_ssc0000359.1_g000072 Rmu_ssc0000434.1_g000005 Rmu_ssc0000434.1_g000007
rosa_roxburghii Rroxscaffold_4G00298420 Rroxscaffold_4G00298720 Rroxscaffold_4G00308990 Rroxscaffold_4G00309000 Rroxscaffold_4G00309010 Rroxscaffold_4G00309050 Rroxscaffold_4G00309070 Rroxscaffold_4G00309100 Rroxscaffold_4G00310030 Rroxscaffold_4G00310050 Rroxscaffold_4G00311880 Rroxscaffold_5G00339420 Rroxscaffold_5G00339450 Rroxscaffold_5G00344880 Rroxscaffold_5G00352270 Rroxscaffold_5G00362240 Rroxscaffold_5G00370840 Rroxscaffold_7G00202970
rosa_rugosa Rorug01G0159100.1 Rorug01G0159200.1 Rorug01G0171700 Rorug01G0171900 Rorug01G0172000 Rorug01G0191700 Rorug01G0191800 Rorug01G0256900 Rorug01G0257000 Rorug01G0257100 Rorug03G0198000 Rorug03G0366300.1 Rorug03G0366400.1 Rorug03G0366500.1 Rorug04G0081200 Rorug04G0081200 Rorug04G0081200 Rorug04G0233700 Rorug04G0233800 Rorug04G0233800 Rorug06G0013300
rosa_samantha Rh1CG138800 Rh1CG161300 Rh1CG173800 Rh1CG179800 Rh1CG180100 Rh1CG180500 Rh1CG180800 Rh1CG180900 Rh1CG194100 Rh1DG205100 Rh3AG236300 Rh4AG052000 Rh4AG052100 Rh4AG145900 Rh4AG289700 Rh4AG289800 Rh6AG136800 Rh6AG137300 Rh6BG133600 Rh6CG132000 Rh6CG134000 Rh6DG119300
rosa_wichuraiana Rw0G003420 Rw1G015500 Rw1G016110 Rw1G016180 Rw1G016210 Rw1G016230 Rw1G016280 Rw1G016440 Rw1G016450 Rw1G016460 Rw1G016480 Rw1G017490 Rw1G024140 Rw1G024160 Rw3G022530 Rw4G004140 Rw4G004190 Rw4G011850 Rw6G011800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1726
AccB1I GGYRCC 1 cut(s) 1726
AccB7I CCANNNNNTGG 1 cut(s) 523
AccI GTMKAC 1 cut(s) 1698
AccIII TCCGGA 1 cut(s) 1350
AciI CCGC 2 cut(s) 585, 1571
AclWI GGATC 4 cut(s) 60, 595, 1342, 1347
AcsI RAATTY 1 cut(s) 1582
AfaI GTAC 2 cut(s) 1134, 1728
AfiI CCNNNNNNNGG 3 cut(s) 523, 1736, 1737
AflIII ACRYGT 1 cut(s) 1753
AhdI GACNNNNNGTC 1 cut(s) 1694
AhlI ACTAGT 1 cut(s) 910
AjnI CCWGG 3 cut(s) 254, 854, 1826
AluBI AGCT 6 cut(s) 233, 938, 1006, 1040, 1121, 1900
AluI AGCT 6 cut(s) 233, 938, 1006, 1040, 1121, 1900
Alw21I GWGCWC 1 cut(s) 103
Alw26I GTCTC 4 cut(s) 102, 153, 803, 845
Alw44I GTGCAC 1 cut(s) 99
AlwI GGATC 4 cut(s) 60, 595, 1342, 1347
Ama87I CYCGRG 1 cut(s) 1334
Aor13HI TCCGGA 1 cut(s) 1350
AoxI GGCC 2 cut(s) 1228, 1777
ApaLI GTGCAC 1 cut(s) 99
ApeKI GCWGC 3 cut(s) 203, 872, 1900
ApoI RAATTY 1 cut(s) 1582
AseI ATTAAT 1 cut(s) 1817
Asp700I GAANNNNTTC 3 cut(s) 315, 790, 1584
Asp718I GGTACC 1 cut(s) 1726
AspS9I GGNCC 3 cut(s) 1761, 1778, 1924
AsuC2I CCSGG 2 cut(s) 783, 1235
AsuHPI GGTGA 3 cut(s) 53, 550, 1659
AsuII TTCGAA 1 cut(s) 1684
AvaI CYCGRG 1 cut(s) 1334
AvaII GGWCC 2 cut(s) 1761, 1924
BaeGI GKGCMC 1 cut(s) 103
BaeI ACNNNNGTAYC 2 cut(s) 1647, 1680
BanI GGYRCC 1 cut(s) 1726
BauI CACGAG 1 cut(s) 26
BbsI GAAGAC 3 cut(s) 602, 897, 1693
Bbv12I GWGCWC 1 cut(s) 103
BbvCI CCTCAGC 1 cut(s) 6
BbvI GCAGC 3 cut(s) 190, 859, 1887
BccI CCATC 3 cut(s) 574, 1084, 1874
BceAI ACGGC 2 cut(s) 306, 1276
BciT130I CCWGG 3 cut(s) 256, 856, 1828
BciVI GTATCC 1 cut(s) 900
BcnI CCSGG 2 cut(s) 783, 1235
BcoDI GTCTC 4 cut(s) 102, 153, 803, 845
BcuI ACTAGT 1 cut(s) 910
BfaI CTAG 7 cut(s) 113, 503, 911, 1118, 1152, 1157, 1905
BfuI GTATCC 1 cut(s) 900
BisI GCNGC 3 cut(s) 204, 873, 1901
BlsI GCNGC 3 cut(s) 205, 874, 1902
Bme1390I CCNGG 5 cut(s) 256, 783, 856, 1235, 1828
Bme18I GGWCC 2 cut(s) 1761, 1924
BmeRI GACNNNNNGTC 1 cut(s) 1694
BmeT110I CYCGRG 1 cut(s) 1334
BmgT120I GGNCC 3 cut(s) 1761, 1778, 1924
BmiI GGNNCC 2 cut(s) 1728, 1780
BmrFI CCNGG 5 cut(s) 256, 783, 856, 1235, 1828
BmsI GCATC 7 cut(s) 130, 190, 211, 309, 559, 1524, 1636
BpiI GAAGAC 3 cut(s) 602, 897, 1693
Bpu10I CCTNAGC 1 cut(s) 6
Bpu14I TTCGAA 1 cut(s) 1684
BpuMI CCSGG 2 cut(s) 783, 1235
BsaI GGTCTC 2 cut(s) 102, 845
BsaJI CCNNGG 3 cut(s) 855, 1335, 1650
BsaWI WCCGGW 1 cut(s) 1350
Bsc4I CCNNNNNNNGG 3 cut(s) 523, 1736, 1737
Bse1I ACTGG 1 cut(s) 1631
Bse3DI GCAATG 3 cut(s) 931, 1029, 1629
BseAI TCCGGA 1 cut(s) 1350
BseBI CCWGG 3 cut(s) 256, 856, 1828
BseDI CCNNGG 3 cut(s) 855, 1335, 1650
BseLI CCNNNNNNNGG 3 cut(s) 523, 1736, 1737
BseMI GCAATG 3 cut(s) 931, 1029, 1629
BseMII CTCAG 3 cut(s) 449, 978, 984
BseNI ACTGG 1 cut(s) 1631
BseRI GAGGAG 1 cut(s) 755
BseSI GKGCMC 1 cut(s) 103
BseXI GCAGC 3 cut(s) 190, 859, 1887
BshFI GGCC 2 cut(s) 1230, 1779
BshNI GGYRCC 1 cut(s) 1726
BsiHKAI GWGCWC 1 cut(s) 103
BsiHKCI CYCGRG 1 cut(s) 1334
BsiSI CCGG 3 cut(s) 782, 1235, 1351
BslFI GGGAC 1 cut(s) 872
BslI CCNNNNNNNGG 3 cut(s) 523, 1736, 1737
BsmAI GTCTC 4 cut(s) 102, 153, 803, 845
BsmBI CGTCTC 1 cut(s) 803
BsmFI GGGAC 1 cut(s) 872
BsmI GAATGC 1 cut(s) 887
BsnI GGCC 2 cut(s) 1230, 1779
Bso31I GGTCTC 2 cut(s) 102, 845
BsoBI CYCGRG 1 cut(s) 1334
Bsp119I TTCGAA 1 cut(s) 1684
Bsp1286I GDGCHC 1 cut(s) 103
Bsp13I TCCGGA 1 cut(s) 1350
Bsp143I GATC 6 cut(s) 65, 484, 587, 1339, 1347, 1540
Bsp19I CCATGG 1 cut(s) 1650
BspACI CCGC 2 cut(s) 585, 1571
BspANI GGCC 2 cut(s) 1230, 1779
BspCNI CTCAG 3 cut(s) 450, 979, 985
BspEI TCCGGA 1 cut(s) 1350
BspHI TCATGA 1 cut(s) 1342
BspLI GGNNCC 2 cut(s) 1728, 1780
BspPI GGATC 4 cut(s) 60, 595, 1342, 1347
BspQI GCTCTTC 1 cut(s) 540
BspT104I TTCGAA 1 cut(s) 1684
BspT107I GGYRCC 1 cut(s) 1726
BspTNI GGTCTC 2 cut(s) 102, 845
BsrDI GCAATG 3 cut(s) 931, 1029, 1629
BsrI ACTGG 1 cut(s) 1631
BssECI CCNNGG 3 cut(s) 855, 1335, 1650
BssMI GATC 6 cut(s) 65, 484, 587, 1339, 1347, 1540
BssSI CACGAG 1 cut(s) 26
BssT1I CCWWGG 1 cut(s) 1650
Bst2BI CACGAG 1 cut(s) 26
Bst2UI CCWGG 3 cut(s) 256, 856, 1828
Bst4CI ACNGT 2 cut(s) 164, 398
Bst6I CTCTTC 5 cut(s) 281, 540, 1352, 1569, 1879
BstAPI GCANNNNNTGC 1 cut(s) 385
BstBI TTCGAA 1 cut(s) 1684
BstC8I GCNNGC 2 cut(s) 99, 945
BstDEI CTNAG 4 cut(s) 6, 458, 987, 993
BstDSI CCRYGG 1 cut(s) 1650
BstEII GGTNACC 2 cut(s) 1183, 1654
BstKTI GATC 6 cut(s) 68, 487, 590, 1342, 1350, 1543
BstMAI GTCTC 4 cut(s) 102, 153, 803, 845
BstMBI GATC 6 cut(s) 65, 484, 587, 1339, 1347, 1540
BstMWI GCNNNNNNNGC 3 cut(s) 230, 385, 944
BstNI CCWGG 3 cut(s) 256, 856, 1828
BstNSI RCATGY 2 cut(s) 947, 1250
BstPI GGTNACC 2 cut(s) 1183, 1654
BstSCI CCNGG 5 cut(s) 254, 781, 854, 1233, 1826
BstSLI GKGCMC 1 cut(s) 103
BstV1I GCAGC 3 cut(s) 190, 859, 1887
BstV2I GAAGAC 3 cut(s) 602, 897, 1693
BstX2I RGATCY 3 cut(s) 65, 587, 1347
BstYI RGATCY 3 cut(s) 65, 587, 1347
BsuI GTATCC 1 cut(s) 900
BsuRI GGCC 2 cut(s) 1230, 1779
BtgI CCRYGG 1 cut(s) 1650
BtgZI GCGATG 1 cut(s) 536
BtsIMutI CAGTG 1 cut(s) 169
Cac8I GCNNGC 2 cut(s) 99, 945
CciI TCATGA 1 cut(s) 1342
Cfr13I GGNCC 3 cut(s) 1761, 1778, 1924
CseI GACGC 1 cut(s) 155
Csp6I GTAC 2 cut(s) 1133, 1727
CviAII CATG 9 cut(s) 476, 518, 887, 944, 1247, 1260, 1343, 1538, 1651
CviQI GTAC 2 cut(s) 1133, 1727
DdeI CTNAG 4 cut(s) 6, 458, 987, 993
DpnI GATC 6 cut(s) 67, 486, 589, 1341, 1349, 1542
DpnII GATC 6 cut(s) 65, 484, 587, 1339, 1347, 1540
DraI TTTAAA 1 cut(s) 1174
DriI GACNNNNNGTC 1 cut(s) 1694
Eam1104I CTCTTC 5 cut(s) 281, 540, 1352, 1569, 1879
Eam1105I GACNNNNNGTC 1 cut(s) 1694
EarI CTCTTC 5 cut(s) 281, 540, 1352, 1569, 1879
EciI GGCGGA 2 cut(s) 600, 1586
Eco130I CCWWGG 1 cut(s) 1650
Eco31I GGTCTC 2 cut(s) 102, 845
Eco47I GGWCC 2 cut(s) 1761, 1924
Eco88I CYCGRG 1 cut(s) 1334
Eco91I GGTNACC 2 cut(s) 1183, 1654
EcoO109I RGGNCCY 1 cut(s) 1761
EcoO65I GGTNACC 2 cut(s) 1183, 1654
EcoRII CCWGG 3 cut(s) 254, 854, 1826
EcoT14I CCWWGG 1 cut(s) 1650
EcoT22I ATGCAT 3 cut(s) 1252, 1539, 1629
ErhI CCWWGG 1 cut(s) 1650
Esp3I CGTCTC 1 cut(s) 803
FaeI CATG 9 cut(s) 479, 521, 890, 947, 1250, 1263, 1346, 1541, 1654
FalI AAGNNNNNCTT 4 cut(s) 368, 400, 1492, 1524
FaqI GGGAC 1 cut(s) 872
FatI CATG 9 cut(s) 475, 517, 886, 943, 1246, 1259, 1342, 1537, 1650
FauNDI CATATG 1 cut(s) 1252
FblI GTMKAC 1 cut(s) 1698
Fnu4HI GCNGC 3 cut(s) 204, 873, 1901
Fsp4HI GCNGC 3 cut(s) 204, 873, 1901
FspBI CTAG 7 cut(s) 113, 503, 911, 1118, 1152, 1157, 1905
GluI GCNGC 3 cut(s) 204, 873, 1901
HaeIII GGCC 2 cut(s) 1230, 1779
HapII CCGG 3 cut(s) 782, 1235, 1351
HgaI GACGC 1 cut(s) 155
Hin1II CATG 9 cut(s) 479, 521, 890, 947, 1250, 1263, 1346, 1541, 1654
HindIII AAGCTT 1 cut(s) 231
HinfI GANTC 9 cut(s) 251, 416, 509, 893, 919, 989, 1483, 1681, 1941
HpaII CCGG 3 cut(s) 782, 1235, 1351
HphI GGTGA 3 cut(s) 53, 550, 1659
Hpy166II GTNNAC 7 cut(s) 101, 964, 1060, 1210, 1699, 1751, 1927
Hpy188I TCNGA 6 cut(s) 77, 340, 370, 994, 1533, 1853
Hpy188III TCNNGA 6 cut(s) 56, 241, 361, 1334, 1343, 1351
Hpy8I GTNNAC 7 cut(s) 101, 964, 1060, 1210, 1699, 1751, 1927
Hpy99I CGWCG 1 cut(s) 159
HpyCH4III ACNGT 2 cut(s) 164, 398
HpyCH4IV ACGT 1 cut(s) 1755
HpyF10VI GCNNNNNNNGC 3 cut(s) 230, 385, 944
HpyF3I CTNAG 4 cut(s) 6, 458, 987, 993
HpySE526I ACGT 1 cut(s) 1755
Hsp92II CATG 9 cut(s) 479, 521, 890, 947, 1250, 1263, 1346, 1541, 1654
Kpn2I TCCGGA 1 cut(s) 1350
KpnI GGTACC 1 cut(s) 1730
Kzo9I GATC 6 cut(s) 65, 484, 587, 1339, 1347, 1540
LguI GCTCTTC 1 cut(s) 540
LmnI GCTCC 2 cut(s) 1003, 1853
Lsp1109I GCAGC 3 cut(s) 190, 859, 1887
LweI GCATC 7 cut(s) 130, 190, 211, 309, 559, 1524, 1636
MaeI CTAG 7 cut(s) 113, 503, 911, 1118, 1152, 1157, 1905
MaeII ACGT 1 cut(s) 1755
MaeIII GTNAC 6 cut(s) 41, 323, 634, 913, 1183, 1654
MalI GATC 6 cut(s) 67, 486, 589, 1341, 1349, 1542
MboI GATC 6 cut(s) 65, 484, 587, 1339, 1347, 1540
MfeI CAATTG 2 cut(s) 434, 1450
MflI RGATCY 3 cut(s) 65, 587, 1347
MhlI GDGCHC 1 cut(s) 103
MlyI GAGTC 3 cut(s) 887, 913, 998
MmeI TCCRAC 1 cut(s) 1511
Mph1103I ATGCAT 3 cut(s) 1252, 1539, 1629
MroI TCCGGA 1 cut(s) 1350
MroXI GAANNNNTTC 3 cut(s) 315, 790, 1584
MseI TTAA 5 cut(s) 1173, 1301, 1521, 1803, 1817
MslI CAYNNNNRTG 5 cut(s) 880, 948, 1067, 1251, 1614
MspI CCGG 3 cut(s) 782, 1235, 1351
MspR9I CCNGG 5 cut(s) 256, 783, 856, 1235, 1828
MunI CAATTG 2 cut(s) 434, 1450
Mva1269I GAATGC 1 cut(s) 887
MvaI CCWGG 3 cut(s) 256, 856, 1828
MwoI GCNNNNNNNGC 3 cut(s) 230, 385, 944
NciI CCSGG 2 cut(s) 783, 1235
NcoI CCATGG 1 cut(s) 1650
NdeI CATATG 1 cut(s) 1252
NdeII GATC 6 cut(s) 65, 484, 587, 1339, 1347, 1540
NlaIII CATG 9 cut(s) 479, 521, 890, 947, 1250, 1263, 1346, 1541, 1654
NlaIV GGNNCC 2 cut(s) 1728, 1780
NmuCI GTSAC 1 cut(s) 41
NsiI ATGCAT 3 cut(s) 1252, 1539, 1629
NspI RCATGY 2 cut(s) 947, 1250
NspV TTCGAA 1 cut(s) 1684
PaeI GCATGC 1 cut(s) 947
PagI TCATGA 1 cut(s) 1342
PciSI GCTCTTC 1 cut(s) 540
PctI GAATGC 1 cut(s) 887
PdmI GAANNNNTTC 3 cut(s) 315, 790, 1584
PfeI GAWTC 5 cut(s) 251, 416, 509, 1483, 1681
PflMI CCANNNNNTGG 1 cut(s) 523
PfoI TCCNGGA 2 cut(s) 254, 1233
PkrI GCNGC 3 cut(s) 205, 874, 1902
PleI GAGTC 3 cut(s) 887, 913, 997
PpsI GAGTC 3 cut(s) 887, 913, 997
PpuMI RGGWCCY 1 cut(s) 1761
PshBI ATTAAT 1 cut(s) 1817
Psp5II RGGWCCY 1 cut(s) 1761
Psp6I CCWGG 3 cut(s) 254, 854, 1826
PspEI GGTNACC 2 cut(s) 1183, 1654
PspGI CCWGG 3 cut(s) 254, 854, 1826
PspN4I GGNNCC 2 cut(s) 1728, 1780
PspPI GGNCC 3 cut(s) 1761, 1778, 1924
PspPPI RGGWCCY 1 cut(s) 1761
PsuI RGATCY 3 cut(s) 65, 587, 1347
RsaI GTAC 2 cut(s) 1134, 1728
RsaNI GTAC 2 cut(s) 1133, 1727
RseI CAYNNNNRTG 5 cut(s) 880, 948, 1067, 1251, 1614
SapI GCTCTTC 1 cut(s) 540
SaqAI TTAA 5 cut(s) 1173, 1301, 1521, 1803, 1817
SatI GCNGC 3 cut(s) 204, 873, 1901
Sau3AI GATC 6 cut(s) 65, 484, 587, 1339, 1347, 1540
Sau96I GGNCC 3 cut(s) 1761, 1778, 1924
SchI GAGTC 3 cut(s) 887, 913, 998
ScrFI CCNGG 5 cut(s) 256, 783, 856, 1235, 1828
SduI GDGCHC 1 cut(s) 103
SfaNI GCATC 7 cut(s) 130, 190, 211, 309, 559, 1524, 1636
SfuI TTCGAA 1 cut(s) 1684
SinI GGWCC 2 cut(s) 1761, 1924
SmiMI CAYNNNNRTG 5 cut(s) 880, 948, 1067, 1251, 1614
SmlI CTYRAG 1 cut(s) 1930
SmoI CTYRAG 1 cut(s) 1930
SpeI ACTAGT 1 cut(s) 910
SphI GCATGC 1 cut(s) 947
SsiI CCGC 2 cut(s) 585, 1571
SspI AATATT 1 cut(s) 1519
SspMI CTAG 7 cut(s) 113, 503, 911, 1118, 1152, 1157, 1905
StyD4I CCNGG 5 cut(s) 254, 781, 854, 1233, 1826
StyI CCWWGG 1 cut(s) 1650
TaaI ACNGT 2 cut(s) 164, 398
TaiI ACGT 1 cut(s) 1758
TaqI TCGA 2 cut(s) 1684, 1939
TatI WGTACW 1 cut(s) 1132
TfiI GAWTC 5 cut(s) 251, 416, 509, 1483, 1681
Tru1I TTAA 5 cut(s) 1173, 1301, 1521, 1803, 1817
Tru9I TTAA 5 cut(s) 1173, 1301, 1521, 1803, 1817
TscAI CASTG 1 cut(s) 169
TseFI GTSAC 1 cut(s) 41
TseI GCWGC 3 cut(s) 203, 872, 1900
Tsp45I GTSAC 1 cut(s) 41
TspDTI ATGAA 8 cut(s) 109, 534, 765, 822, 903, 942, 1370, 1889
TspRI CASTG 1 cut(s) 169
Van91I CCANNNNNTGG 1 cut(s) 523
VneI GTGCAC 1 cut(s) 99
VpaK11BI GGWCC 2 cut(s) 1761, 1924
VspI ATTAAT 1 cut(s) 1817
XapI RAATTY 1 cut(s) 1582
XceI RCATGY 2 cut(s) 947, 1250
XcmI CCANNNNNNNNNTGG 1 cut(s) 524
XmiI GTMKAC 1 cut(s) 1698
XmnI GAANNNNTTC 3 cut(s) 315, 790, 1584
XspI CTAG 7 cut(s) 113, 503, 911, 1118, 1152, 1157, 1905
Zsp2I ATGCAT 3 cut(s) 1252, 1539, 1629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.