Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000069

Physical Location & Seq

Genomic Coordinates Forward (+)

18289256 .. 18298231

Gene Structure 8976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00298420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2877 bp

ATGGCTGGAGCTGTCGTTTCAATGGTGATCCATGGGCTCAGGCCGCTCGGAAGCTTGATAATTCAGCAAGCTAAGTTTTTCAATGAAGTCGGCGATCAAGTTGAGCTTGCACAAAGCGAGCTACTCTTGATGCAAGGCTTCCTGAAAGATGCAGATGCACGACAAGAAGATGAGGAAGTGGTACGCTTCTGGGTTAATGTGGTTAGAGAAGCTGCTTATGATTTGGAGGATGCCATTGAATCTTTTGTCTTGAAAGTAGCTTTGAAGAAGGAAGCAAGTGTGAAGGTAGTTCTCAAAAGGTTTGCTTGTTTCTTGAGCAAAGGAGTGGATCGTTACAAGATCGGTTTGGAAATTGAGAGAATTACGACCAAGCTTTCTAAGCTGAGGTTGACCATGCAAAGCTATGACATAAAGCAAGAGAAGGGGAATGAAGGTGCTACTTCTTCAATGAGGCAACGAGAACGCAGGCTAACCTATCCTCATGTTAATGAGCATGATGTTGTTGGGTTAGGGAACGACATAGAGAAGTTAGCTACGCATTTGGTGGAAGAAAAAGCCCATCGAGTTGTTTCTATTTGGGGTATGGGCGGCTCGGGAAAGACCACTCTTGCAAAACAAATTTACAATCATAAGAAAGTCAAGTCTCATTTTGGTTGTTTTGCTTGGGTGTGTATATCTCAACAATGTGACGGTACAGCAGTTATGAAAGAAAGTTTTATTAAACTTAGCGGTGCCTCCGATGAGCAACGACAAGGAATTGCAAATCTGAGTAATGATGAAATAGCAGAGAGGTTGTGCAATTTCCAACGAGACACAAAATGTTTGGTGGTGCTGGATGATATTTGGACTCTTGATGCATGGAACTCTTTTAATGGTGGATTTTCAGTGGATGAAGAAACTGAGAGCCGCATATTATTGACCACTCGCAACAGAGAAGTAGCTTCGCTTGCAAGGGGAAATAGCTTACTCTACGAATCTCGGGCGCTAAGTGCAGATGAAAGCTGGAATTTGTTTCGGAAGATAGCATTCTTTGAAATGGATGATACAAATTCAGACTCTCAAATTTATTCAAAGAAGGAAGAACTGGGAAAGAATATGCTTCAACATTGTGCAGGTTTGCCATTAGCTATTATCGTGCTCGCAGGACTACTAGCTAGAAAAGACACAATTGATGAGTGGGAAACTGTGCATAAGAATGTTAATGTATATATAAGGAGAGGCACAGACCTTGAACGAGAATACAAAGGTCAAAAATATGAAGGTGCTTCATGGGTCTTGGCACTCAGTTATGACAACTTACCATATCGCTTAAAGCTATGCTTTTTGTACTTGGGAAATTTTCCTGAAGACTATGAGATACGGGTGAAAAGACTGACTCAGTTATGGATGGCAGAAGGTTTTATATCCACGACGTCAACAGAAATGATGGAAGATGTATCATATAGTTGCTTGAGTGAATTGGTGGAAAGGTGTATGGTTCAAGTGGTGGACATTGGTTTATCTGGGAAAATTAAAACTTGTCGTCTTCATGATCTTATGCGAGACTTGTGCTTGTTAAAAGCCGAAGAGGAGAACTTTTTACATGTTGTCAATCTTCATACAGGGACGAGAAACAACACAACACAAGTCGGTAGAGTTCGAAGAGTGGCAATGTATGTGAACGAAACCGTTGATCAATTAGTTCCCACTACAAGAGGTGCTCCCCTGAGGTCACTCTTATACTTCCGCCCAGAATACTTTCCTCGAATCTGGAATAAAAAAGTCATCCGGTCTGTATTCAATGACTTCAAATTACTTAGAGTCTTGAAGTTGGAAGATATGATAGGAATCAAAGAGTTACCGAGCACAATTGGAAATCTGGTCCACTTGCGGTTTTTAAGTCTAAAGAATAGTGTAGTACGAAACTTGCCATCATCTGTAACTAACTTGGTGTGTTTGCAGACTTTAGATTTACGTTGTTCTTCGACAATGAACATCCCAAATGTGTTTAAGAAGATGGAACAATTGAGGCATTTATATCTACCCATGAATCACAAGGTACGTGGGGAGCTCTCATTGGCTACAGCTTGCAACTTGCAGACGTTATTCAATGTTAAATGTGAAAATTGTGATTTGAATGCCGTTGTTGGACTATACAATCTTCGGAAACTATCCATCGGGGATGGGATTTATGGGAAAGGGTCAGTACGCTGGAAAAAACTGGAGGAATTGTTGAGATCGAGAAGTAGTCCCACATTCCACCATCTTCGCTCTCTATCTCTGCAACTGTATGGTCATGATTCAATATTGGATCTATCGGGGTTTCGTTTTATATACAAGCTGCGACTGGAGGGGTCCTCAATTAAGGAGTTACCAGAGAACCTCATCAAGATAAAGCTGATTTCTACTAAACTGGAGGGGGACCAGATAAAAATACTTGAGAAGCTGCCACACTTGAGAGCGCTTTACCTTCGAGGTCGAGTTTTCTCCAGCCTTCCTTCAAACACACTGGTTTGCAGCAATGGAGGATTTCCCAATCTTGAATTTCTTTCCCTTGAAGTTTTGCCAGAAATGAAAGAGTGGAGGGTGGAGGAAGGAGCCATGCCTCGTCTCCGCAGATTGTGCATTCATTTGTGCGGATTGAGGGCAGTTCCAGATGGGCTTCAATACGTTGCTACCCTCAAGGAGTTGACAGTCAAGTGGATGTCAAGTGAATTCTGTAGTAGGCTTGGGGAAGACGGGGAGGATTTCCACAAAATCAAACATGTACCTTCTCTTATCATAACAGGAACTGAATTCAGAGACTTGGACGACTTGTTGGAAGAAGTTGAGAGAGCGAGTAGGCTTGGACAAGATGCTGAGAGAGCGAGCAGGCGTATCTGGACATGTCTCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0002230 GO:0002238 GO:0002239 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009615 GO:0009620 GO:0009626 GO:0009628 GO:0009637 GO:0009642 GO:0009646 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0012501 GO:0014070 GO:0016020 GO:0023052 GO:0030054 GO:0031347 GO:0032101 GO:0032870 GO:0033554 GO:0034050 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0043207 GO:0043900 GO:0044464 GO:0045087 GO:0046677 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071944 GO:0080134 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

958

Amino Acids

109.44

Weight (kDa)

8.51

Isoelectric Point (pI)

38.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	14 - 93	1.8e-19	Rx N-terminal domain
NB-ARC	PF00931	173 - 344	1e-38	NB-ARC domain
WHD_DRP	PF23559	447 - 517	9.2e-22	Disease resistance protein Winged helix domain
LRR_14	PF23598	592 - 895	1.5e-31	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G50180 AT1G53350 AT1G58390 AT1G58390 AT1G58400 AT1G58400 AT1G58400 AT1G58410 AT1G58410 AT1G58410 AT1G58410 AT1G58602 AT1G58602 AT1G58807 AT1G58807 AT1G58848 AT1G58848 AT1G59124 AT1G59124 AT1G59218 AT1G59218 AT1G59218 AT1G59620 AT1G59780 AT1G59780 AT5G35450 AT5G35450 AT5G43470 AT5G43470 AT5G43470 AT5G43470 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620
fragaria_vesca	FvH4_4g04072 FvH4_4g22931 FvH4_4g22931 FvH4_4g22940 FvH4_6g49940 FvH4_6g49940 FvH4_7g08100 FvH4_7g08870 FvH4_7g08870 FvH4_7g09280 FvH4_7g09290 FvH4_7g15190 FvH4_7g15200 FvH4_7g15240 FvH4_7g15240 FvH4_7g33440
malus_domestica	MD00G1174600.v1.1 MD01G1113700.v1.1 MD03G1071300.v1.1 MD04G1041500.v1.1 MD04G1238000.v1.1 MD07G1029000.v1.1 MD07G1092100.v1.1 MD07G1092300.v1.1 MD07G1092600.v1.1 MD12G1256300.v1.1 MD13G1128200.v1.1 MD13G1128400.v1.1 MD17G1268000.v1.1
prunus_persica	Prupe.1G041300_v2.0.a1 Prupe.1G041300_v2.0.a1 Prupe.1G042900_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043600_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G046700_v2.0.a1 Prupe.1G047700_v2.0.a1 Prupe.1G047900_v2.0.a1 Prupe.1G048000_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G049900_v2.0.a1 Prupe.1G051500_v2.0.a1 Prupe.1G051800_v2.0.a1 Prupe.1G051900_v2.0.a1 Prupe.1G052200_v2.0.a1 Prupe.1G194900_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117300_v2.0.a1 Prupe.2G117400_v2.0.a1 Prupe.2G117500_v2.0.a1 Prupe.2G117700_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G119900_v2.0.a1
pyrus_communis	pycom03g05750 pycom04g21110 pycom07g07530 pycom07g07590 pycom13g11110 pycom13g11140 pycom13g11160 pycom13g11170 pycom17g26680
rosa_chinensis	RchiOBHm_Chr1g0341231 RchiOBHm_Chr1g0344091 RchiOBHm_Chr1g0344161 RchiOBHm_Chr1g0345001 RchiOBHm_Chr1g0345351 RchiOBHm_Chr1g0345371 RchiOBHm_Chr1g0345391 RchiOBHm_Chr1g0345531 RchiOBHm_Chr1g0345551 RchiOBHm_Chr1g0345571 RchiOBHm_Chr1g0345581 RchiOBHm_Chr1g0345661 RchiOBHm_Chr1g0345691 RchiOBHm_Chr1g0345761 RchiOBHm_Chr1g0345791 RchiOBHm_Chr1g0345821 RchiOBHm_Chr1g0345911 RchiOBHm_Chr1g0345941 RchiOBHm_Chr1g0357611 RchiOBHm_Chr1g0357911 RchiOBHm_Chr1g0357921 RchiOBHm_Chr1g0357931 RchiOBHm_Chr1g0357971 RchiOBHm_Chr1g0358121 RchiOBHm_Chr1g0383491 RchiOBHm_Chr1g0383511 RchiOBHm_Chr1g0383521 RchiOBHm_Chr3g0480581 RchiOBHm_Chr4g0394341 RchiOBHm_Chr4g0394361 RchiOBHm_Chr4g0394411 RchiOBHm_Chr4g0394441 RchiOBHm_Chr4g0407681 RchiOBHm_Chr4g0429191 RchiOBHm_Chr4g0429201 RchiOBHm_Chr4g0429211 RchiOBHm_Chr4g0429221 RchiOBHm_Chr6g0265091
rosa_laevigata	RLG00000007088 RLG00000008700 RLG00000009190 RLG00000009702 RLG00000014210 RLG00000028829 RLG00000028833 RLG00000028837 RLG00000028838 RLG00000028921 RLG00000028926
rosa_multiflora	Rmu_co8366955.1_g000001 Rmu_co8394205.1_g000001 Rmu_sc0000019.1_g000001 Rmu_sc0000054.1_g000031 Rmu_sc0000054.1_g000033 Rmu_sc0000200.1_g000002 Rmu_sc0000200.1_g000007 Rmu_sc0000200.1_g000018 Rmu_sc0000200.1_g000020 Rmu_sc0000200.1_g000021 Rmu_sc0000251.1_g000012 Rmu_sc0000251.1_g000015 Rmu_sc0000251.1_g000028 Rmu_sc0000253.1_g000015 Rmu_sc0000255.1_g000045 Rmu_sc0000255.1_g000046 Rmu_sc0001292.1_g000013 Rmu_sc0001292.1_g000018 Rmu_sc0001292.1_g000028 Rmu_sc0001292.1_g000029 Rmu_sc0001349.1_g000006 Rmu_sc0001349.1_g000014 Rmu_sc0001582.1_g000006 Rmu_sc0001582.1_g000018 Rmu_sc0001582.1_g000020 Rmu_sc0001692.1_g000007 Rmu_sc0001692.1_g000024 Rmu_sc0001692.1_g000026 Rmu_sc0001692.1_g000029 Rmu_sc0001692.1_g000030 Rmu_sc0001835.1_g000006 Rmu_sc0001835.1_g000010 Rmu_sc0002071.1_g000005 Rmu_sc0002276.1_g000002 Rmu_sc0002276.1_g000009 Rmu_sc0002329.1_g000018 Rmu_sc0002329.1_g000023 Rmu_sc0002329.1_g000025 Rmu_sc0002523.1_g000005 Rmu_sc0003573.1_g000005 Rmu_sc0003573.1_g000006 Rmu_sc0004099.1_g000021 Rmu_sc0005812.1_g000009 Rmu_sc0006271.1_g000002 Rmu_sc0006287.1_g000038 Rmu_sc0006439.1_g000008 Rmu_sc0007456.1_g000004 Rmu_sc0007581.1_g000009 Rmu_sc0007849.1_g000014 Rmu_sc0008115.1_g000012 Rmu_sc0010521.1_g000004 Rmu_sc0012471.1_g000017 Rmu_sc0014762.1_g000001 Rmu_sc0015150.1_g000003 Rmu_sc0017221.1_g000001 Rmu_sc0017299.1_g000001 Rmu_sc0017299.1_g000002 Rmu_sc0021457.1_g000001 Rmu_sc0022067.1_g000001 Rmu_sc0033275.1_g000001 Rmu_ssc0000245.1_g000012 Rmu_ssc0000359.1_g000035 Rmu_ssc0000359.1_g000067 Rmu_ssc0000359.1_g000072 Rmu_ssc0000434.1_g000005 Rmu_ssc0000434.1_g000007
rosa_roxburghii	Rroxscaffold_4G00298420 Rroxscaffold_4G00298720 Rroxscaffold_4G00308990 Rroxscaffold_4G00309000 Rroxscaffold_4G00309010 Rroxscaffold_4G00309050 Rroxscaffold_4G00309070 Rroxscaffold_4G00309100 Rroxscaffold_4G00310030 Rroxscaffold_4G00310050 Rroxscaffold_4G00311880 Rroxscaffold_5G00339420 Rroxscaffold_5G00339450 Rroxscaffold_5G00344880 Rroxscaffold_5G00352270 Rroxscaffold_5G00362240 Rroxscaffold_5G00370840 Rroxscaffold_7G00202970
rosa_rugosa	Rorug01G0159100.1 Rorug01G0159200.1 Rorug01G0171700 Rorug01G0171900 Rorug01G0172000 Rorug01G0191700 Rorug01G0191800 Rorug01G0256900 Rorug01G0257000 Rorug01G0257100 Rorug03G0198000 Rorug03G0366300.1 Rorug03G0366400.1 Rorug03G0366500.1 Rorug04G0081200 Rorug04G0081200 Rorug04G0081200 Rorug04G0233700 Rorug04G0233800 Rorug04G0233800 Rorug06G0013300
rosa_samantha	Rh1CG138800 Rh1CG161300 Rh1CG173800 Rh1CG179800 Rh1CG180100 Rh1CG180500 Rh1CG180800 Rh1CG180900 Rh1CG194100 Rh1DG205100 Rh3AG236300 Rh4AG052000 Rh4AG052100 Rh4AG145900 Rh4AG289700 Rh4AG289800 Rh6AG136800 Rh6AG137300 Rh6BG133600 Rh6CG132000 Rh6CG134000 Rh6DG119300
rosa_wichuraiana	Rw0G003420 Rw1G015500 Rw1G016110 Rw1G016180 Rw1G016210 Rw1G016230 Rw1G016280 Rw1G016440 Rw1G016450 Rw1G016460 Rw1G016480 Rw1G017490 Rw1G024140 Rw1G024160 Rw3G022530 Rw4G004140 Rw4G004190 Rw4G011850 Rw6G011800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1415
Acc36I	ACCTGC	1 cut(s)	1103
AccB1I	GGYRCC	1 cut(s)	731
AccBSI	CCGCTC	1 cut(s)	46
AciI	CCGC	8 cut(s)	44, 588, 729, 907, 1726, 1870, 2593, 2616
AclWI	GGATC	3 cut(s)	22, 336, 2298
AcsI	RAATTY	8 cut(s)	618, 1006, 1048, 1062, 1336, 2522, 2693, 2774
AcuI	CTGAAG	1 cut(s)	1365
AcyI	GRCGYC	1 cut(s)	1412
AfaI	GTAC	7 cut(s)	183, 694, 1328, 1899, 2040, 2187, 2748
AfeI	AGCGCT	1 cut(s)	2442
AflIII	ACRYGT	3 cut(s)	1582, 2743, 2864
Alw21I	GWGCWC	4 cut(s)	1140, 1702, 1847, 2052
Alw26I	GTCTC	6 cut(s)	648, 804, 1536, 2594, 2775, 2873
AlwI	GGATC	3 cut(s)	22, 336, 2298
AlwNI	CAGNNNCTG	1 cut(s)	2771
Ama87I	CYCGRG	2 cut(s)	592, 978
Aor51HI	AGCGCT	1 cut(s)	2442
AoxI	GGCC	1 cut(s)	41
ApeKI	GCWGC	4 cut(s)	212, 2320, 2425, 2496
ApoI	RAATTY	8 cut(s)	618, 1006, 1048, 1062, 1336, 2522, 2693, 2774
Asp700I	GAANNNNTTC	1 cut(s)	1737
AspLEI	GCGC	2 cut(s)	985, 2443
AspS9I	GGNCC	3 cut(s)	1861, 2334, 2401
AsuHPI	GGTGA	2 cut(s)	37, 1375
AsuII	TTCGAA	1 cut(s)	1639
AvaI	CYCGRG	2 cut(s)	592, 978
AvaII	GGWCC	3 cut(s)	1861, 2334, 2401
AxyI	CCTNAGG	1 cut(s)	1706
BaeI	ACNNNNGTAYC	2 cut(s)	684, 717
BanI	GGYRCC	1 cut(s)	731
BanII	GRGCYC	2 cut(s)	39, 2052
BbsI	GAAGAC	3 cut(s)	1353, 1517, 2721
Bbv12I	GWGCWC	4 cut(s)	1140, 1702, 1847, 2052
BbvCI	CCTCAGC	1 cut(s)	383
BbvI	GCAGC	4 cut(s)	199, 2307, 2412, 2508
BccI	CCATC	9 cut(s)	567, 1381, 1420, 1918, 1990, 2156, 2162, 2250, 2630
BceAI	ACGGC	1 cut(s)	2105
BcgI	CGANNNNNNTGC	2 cut(s)	1530, 1564
BclI	TGATCA	1 cut(s)	1672
BcoDI	GTCTC	6 cut(s)	648, 804, 1536, 2594, 2775, 2873
BfaI	CTAG	2 cut(s)	1151, 1155
BfmI	CTRYAG	2 cut(s)	2061, 2698
BfoI	RGCGCY	2 cut(s)	986, 2444
BfuAI	ACCTGC	1 cut(s)	1103
BisI	GCNGC	7 cut(s)	44, 213, 589, 907, 2321, 2426, 2497
BlsI	GCNGC	7 cut(s)	45, 214, 590, 908, 2322, 2427, 2498
Bme18I	GGWCC	3 cut(s)	1861, 2334, 2401
BmeT110I	CYCGRG	2 cut(s)	592, 978
BmgT120I	GGNCC	3 cut(s)	1861, 2334, 2401
BmiI	GGNNCC	4 cut(s)	733, 2335, 2402, 2578
BmrI	ACTGGG	1 cut(s)	1094
BmsI	GCATC	6 cut(s)	120, 139, 145, 220, 844, 2824
BmuI	ACTGGG	1 cut(s)	1094
BpiI	GAAGAC	3 cut(s)	1353, 1517, 2721
BplI	GAGNNNNNCTC	2 cut(s)	2321, 2353
BpmI	CTGGAG	5 cut(s)	27, 2222, 2348, 2414, 2452
Bpu10I	CCTNAGC	2 cut(s)	38, 383
Bpu14I	TTCGAA	1 cut(s)	1639
BpuEI	CTTGAG	6 cut(s)	334, 1471, 2438, 2455, 2645, 2855
BsaAI	YACGTR	1 cut(s)	2042
BsaBI	GATNNNNATC	1 cut(s)	1826
BsaHI	GRCGYC	1 cut(s)	1412
BsaJI	CCNNGG	1 cut(s)	31
BsaWI	WCCGGW	1 cut(s)	1767
BsaXI	ACNNNNNCTCC	3 cut(s)	30, 2195, 2225
Bse1I	ACTGG	5 cut(s)	1089, 2205, 2331, 2397, 2493
Bse21I	CCTNAGG	1 cut(s)	1706
Bse3DI	GCAATG	2 cut(s)	1656, 2506
Bse8I	GATNNNNATC	1 cut(s)	1826
BseDI	CCNNGG	1 cut(s)	31
BseGI	GGATG	9 cut(s)	235, 841, 895, 1045, 1392, 1764, 1974, 2167, 2688
BseJI	GATNNNNATC	1 cut(s)	1826
BseMI	GCAATG	2 cut(s)	1656, 2506
BseMII	CTCAG	8 cut(s)	52, 374, 758, 891, 1297, 1391, 1697, 2829
BseNI	ACTGG	5 cut(s)	1089, 2205, 2331, 2397, 2493
BseRI	GAGGAG	1 cut(s)	1583
BseXI	GCAGC	4 cut(s)	199, 2307, 2412, 2508
BsgI	GTGCAG	2 cut(s)	1011, 1131
BshFI	GGCC	1 cut(s)	43
BshNI	GGYRCC	1 cut(s)	731
BsiHKAI	GWGCWC	4 cut(s)	1140, 1702, 1847, 2052
BsiHKCI	CYCGRG	2 cut(s)	592, 978
BsiSI	CCGG	1 cut(s)	1768
BslFI	GGGAC	3 cut(s)	1618, 2214, 2414
BsmAI	GTCTC	6 cut(s)	648, 804, 1536, 2594, 2775, 2873
BsmBI	CGTCTC	1 cut(s)	2594
BsmFI	GGGAC	3 cut(s)	1618, 2214, 2414
BsmI	GAATGC	3 cut(s)	1025, 2122, 2604
BsnI	GGCC	1 cut(s)	43
BsoBI	CYCGRG	2 cut(s)	592, 978
Bsp119I	TTCGAA	1 cut(s)	1639
Bsp1286I	GDGCHC	5 cut(s)	39, 1140, 1702, 1847, 2052
Bsp143I	GATC	8 cut(s)	27, 94, 328, 339, 1531, 1672, 2216, 2290
Bsp19I	CCATGG	1 cut(s)	31
BspACI	CCGC	8 cut(s)	44, 588, 729, 907, 1726, 1870, 2593, 2616
BspANI	GGCC	1 cut(s)	43
BspCNI	CTCAG	8 cut(s)	51, 375, 759, 892, 1296, 1390, 1698, 2830
BspHI	TCATGA	2 cut(s)	1528, 2275
BspLI	GGNNCC	4 cut(s)	733, 2335, 2402, 2578
BspMI	ACCTGC	1 cut(s)	1103
BspPI	GGATC	3 cut(s)	22, 336, 2298
BspT104I	TTCGAA	1 cut(s)	1639
BspT107I	GGYRCC	1 cut(s)	731
BsrBI	CCGCTC	1 cut(s)	46
BsrDI	GCAATG	2 cut(s)	1656, 2506
BsrI	ACTGG	5 cut(s)	1089, 2205, 2331, 2397, 2493
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	8 cut(s)	27, 94, 328, 339, 1531, 1672, 2216, 2290
BssNI	GRCGYC	1 cut(s)	1412
BssT1I	CCWWGG	1 cut(s)	31
Bst4CI	ACNGT	5 cut(s)	692, 1186, 1669, 2268, 2674
Bst6I	CTCTTC	2 cut(s)	1560, 1636
BstACI	GRCGYC	1 cut(s)	1412
BstAPI	GCANNNNNTGC	1 cut(s)	2601
BstBAI	YACGTR	1 cut(s)	2042
BstBI	TTCGAA	1 cut(s)	1639
BstC8I	GCNNGC	9 cut(s)	69, 108, 119, 467, 948, 1140, 2068, 2848, 2852
BstDSI	CCRYGG	1 cut(s)	31
BstF5I	GGATG	9 cut(s)	235, 841, 895, 1045, 1392, 1764, 1974, 2167, 2688
BstH2I	RGCGCY	2 cut(s)	986, 2444
BstHHI	GCGC	2 cut(s)	985, 2443
BstKTI	GATC	8 cut(s)	30, 97, 331, 342, 1534, 1675, 2219, 2293
BstMAI	GTCTC	6 cut(s)	648, 804, 1536, 2594, 2775, 2873
BstMBI	GATC	8 cut(s)	27, 94, 328, 339, 1531, 1672, 2216, 2290
BstMWI	GCNNNNNNNGC	6 cut(s)	43, 379, 947, 989, 2601, 2843
BstNSI	RCATGY	3 cut(s)	1586, 2747, 2868
BstSFI	CTRYAG	2 cut(s)	2061, 2698
BstV1I	GCAGC	4 cut(s)	199, 2307, 2412, 2508
BstV2I	GAAGAC	3 cut(s)	1353, 1517, 2721
BstX2I	RGATCY	1 cut(s)	2290
BstYI	RGATCY	1 cut(s)	2290
Bsu36I	CCTNAGG	1 cut(s)	1706
BsuRI	GGCC	1 cut(s)	43
BtgI	CCRYGG	1 cut(s)	31
BtsCI	GGATG	9 cut(s)	235, 841, 895, 1045, 1392, 1764, 1974, 2167, 2688
BtsIMutI	CAGTG	2 cut(s)	891, 2486
BveI	ACCTGC	1 cut(s)	1103
Cac8I	GCNNGC	9 cut(s)	69, 108, 119, 467, 948, 1140, 2068, 2848, 2852
CaiI	CAGNNNCTG	1 cut(s)	2771
CciI	TCATGA	2 cut(s)	1528, 2275
CfoI	GCGC	2 cut(s)	985, 2443
Cfr13I	GGNCC	3 cut(s)	1861, 2334, 2401
Csp6I	GTAC	7 cut(s)	182, 693, 1327, 1898, 2039, 2186, 2747
CspCI	CAANNNNNGTGG	2 cut(s)	2023, 2058
CviQI	GTAC	7 cut(s)	182, 693, 1327, 1898, 2039, 2186, 2747
DpnI	GATC	8 cut(s)	29, 96, 330, 341, 1533, 1674, 2218, 2292
DpnII	GATC	8 cut(s)	27, 94, 328, 339, 1531, 1672, 2216, 2290
Eam1104I	CTCTTC	2 cut(s)	1560, 1636
EarI	CTCTTC	2 cut(s)	1560, 1636
EciI	GGCGGA	1 cut(s)	1715
Ecl136II	GAGCTC	1 cut(s)	2050
Eco130I	CCWWGG	1 cut(s)	31
Eco24I	GRGCYC	2 cut(s)	39, 2052
Eco47I	GGWCC	3 cut(s)	1861, 2334, 2401
Eco47III	AGCGCT	1 cut(s)	2442
Eco53kI	GAGCTC	1 cut(s)	2050
Eco57I	CTGAAG	1 cut(s)	1365
Eco81I	CCTNAGG	1 cut(s)	1706
Eco88I	CYCGRG	2 cut(s)	592, 978
EcoICRI	GAGCTC	1 cut(s)	2050
EcoO109I	RGGNCCY	1 cut(s)	2334
EcoRI	GAATTC	2 cut(s)	2693, 2774
EcoT14I	CCWWGG	1 cut(s)	31
EcoT22I	ATGCAT	1 cut(s)	859
EcoT38I	GRGCYC	2 cut(s)	39, 2052
ErhI	CCWWGG	1 cut(s)	31
Esp3I	CGTCTC	1 cut(s)	2594
FalI	AAGNNNNNCTT	6 cut(s)	90, 122, 289, 321, 1304, 1336
FaqI	GGGAC	3 cut(s)	1618, 2214, 2414
FbaI	TGATCA	1 cut(s)	1672
Fnu4HI	GCNGC	7 cut(s)	44, 213, 589, 907, 2321, 2426, 2497
FokI	GGATG	9 cut(s)	242, 848, 902, 1052, 1399, 1751, 1961, 2174, 2695
FriOI	GRGCYC	2 cut(s)	39, 2052
Fsp4HI	GCNGC	7 cut(s)	44, 213, 589, 907, 2321, 2426, 2497
FspBI	CTAG	2 cut(s)	1151, 1155
GlaI	GCGC	2 cut(s)	984, 2442
GluI	GCNGC	7 cut(s)	44, 213, 589, 907, 2321, 2426, 2497
GsuI	CTGGAG	5 cut(s)	27, 2222, 2348, 2414, 2452
HaeII	RGCGCY	2 cut(s)	986, 2444
HaeIII	GGCC	1 cut(s)	43
HapII	CCGG	1 cut(s)	1768
HhaI	GCGC	2 cut(s)	985, 2443
Hin1I	GRCGYC	1 cut(s)	1412
Hin6I	GCGC	2 cut(s)	983, 2441
HinP1I	GCGC	2 cut(s)	983, 2441
HincII	GTYRAC	3 cut(s)	390, 1416, 2670
HindII	GTYRAC	3 cut(s)	390, 1416, 2670
HindIII	AAGCTT	2 cut(s)	52, 371
HpaII	CCGG	1 cut(s)	1768
HphI	GGTGA	2 cut(s)	37, 1375
Hpy166II	GTNNAC	6 cut(s)	390, 1416, 1489, 1660, 1864, 2670
Hpy188I	TCNGA	7 cut(s)	50, 739, 768, 1017, 1054, 2145, 2780
Hpy8I	GTNNAC	6 cut(s)	390, 1416, 1489, 1660, 1864, 2670
Hpy99I	CGWCG	1 cut(s)	1414
HpyCH4III	ACNGT	5 cut(s)	692, 1186, 1669, 2268, 2674
HpyCH4IV	ACGT	5 cut(s)	1412, 1954, 2041, 2081, 2649
HpyF10VI	GCNNNNNNNGC	6 cut(s)	43, 379, 947, 989, 2601, 2843
HpySE526I	ACGT	5 cut(s)	1412, 1954, 2041, 2081, 2649
Hsp92I	GRCGYC	1 cut(s)	1412
HspAI	GCGC	2 cut(s)	983, 2441
Ksp22I	TGATCA	1 cut(s)	1672
Kzo9I	GATC	8 cut(s)	27, 94, 328, 339, 1531, 1672, 2216, 2290
LmnI	GCTCC	4 cut(s)	8, 1705, 2047, 2576
Lsp1109I	GCAGC	4 cut(s)	199, 2307, 2412, 2508
LweI	GCATC	6 cut(s)	120, 139, 145, 220, 844, 2824
MaeI	CTAG	2 cut(s)	1151, 1155
MaeII	ACGT	5 cut(s)	1412, 1954, 2041, 2081, 2649
MaeIII	GTNAC	6 cut(s)	332, 686, 1710, 1836, 1918, 2349
MalI	GATC	8 cut(s)	29, 96, 330, 341, 1533, 1674, 2218, 2292
MbiI	CCGCTC	1 cut(s)	46
MboI	GATC	8 cut(s)	27, 94, 328, 339, 1531, 1672, 2216, 2290
MfeI	CAATTG	3 cut(s)	1167, 1848, 2003
MflI	RGATCY	1 cut(s)	2290
MhlI	GDGCHC	5 cut(s)	39, 1140, 1702, 1847, 2052
MlyI	GAGTC	4 cut(s)	841, 1049, 1369, 1809
MmeI	TCCRAC	4 cut(s)	829, 1791, 2107, 2778
Mph1103I	ATGCAT	1 cut(s)	859
MroXI	GAANNNNTTC	1 cut(s)	1737
MslI	CAYNNNNRTG	2 cut(s)	486, 1194
MspI	CCGG	1 cut(s)	1768
MunI	CAATTG	3 cut(s)	1167, 1848, 2003
Mva1269I	GAATGC	3 cut(s)	1025, 2122, 2604
MwoI	GCNNNNNNNGC	6 cut(s)	43, 379, 947, 989, 2601, 2843
NcoI	CCATGG	1 cut(s)	31
NdeII	GATC	8 cut(s)	27, 94, 328, 339, 1531, 1672, 2216, 2290
NlaIV	GGNNCC	4 cut(s)	733, 2335, 2402, 2578
NmuCI	GTSAC	2 cut(s)	686, 1710
NsiI	ATGCAT	1 cut(s)	859
NspI	RCATGY	3 cut(s)	1586, 2747, 2868
NspV	TTCGAA	1 cut(s)	1639
PagI	TCATGA	2 cut(s)	1528, 2275
PciI	ACATGT	3 cut(s)	1582, 2743, 2864
PctI	GAATGC	3 cut(s)	1025, 2122, 2604
PdmI	GAANNNNTTC	1 cut(s)	1737
PfeI	GAWTC	6 cut(s)	239, 974, 1746, 1827, 2029, 2279
PkrI	GCNGC	7 cut(s)	45, 214, 590, 908, 2322, 2427, 2498
PleI	GAGTC	4 cut(s)	841, 1049, 1369, 1808
PpsI	GAGTC	4 cut(s)	841, 1049, 1369, 1808
Ppu21I	YACGTR	1 cut(s)	2042
PpuMI	RGGWCCY	1 cut(s)	2334
PscI	ACATGT	3 cut(s)	1582, 2743, 2864
Psp124BI	GAGCTC	1 cut(s)	2052
Psp5II	RGGWCCY	1 cut(s)	2334
PspN4I	GGNNCC	4 cut(s)	733, 2335, 2402, 2578
PspPI	GGNCC	3 cut(s)	1861, 2334, 2401
PspPPI	RGGWCCY	1 cut(s)	2334
PstNI	CAGNNNCTG	1 cut(s)	2771
PsuI	RGATCY	1 cut(s)	2290
RsaI	GTAC	7 cut(s)	183, 694, 1328, 1899, 2040, 2187, 2748
RsaNI	GTAC	7 cut(s)	182, 693, 1327, 1898, 2039, 2186, 2747
RseI	CAYNNNNRTG	2 cut(s)	486, 1194
SacI	GAGCTC	1 cut(s)	2052
SatI	GCNGC	7 cut(s)	44, 213, 589, 907, 2321, 2426, 2497
Sau3AI	GATC	8 cut(s)	27, 94, 328, 339, 1531, 1672, 2216, 2290
Sau96I	GGNCC	3 cut(s)	1861, 2334, 2401
SchI	GAGTC	4 cut(s)	841, 1049, 1369, 1809
SduI	GDGCHC	5 cut(s)	39, 1140, 1702, 1847, 2052
SfaNI	GCATC	6 cut(s)	120, 139, 145, 220, 844, 2824
SfcI	CTRYAG	2 cut(s)	2061, 2698
SfuI	TTCGAA	1 cut(s)	1639
SinI	GGWCC	3 cut(s)	1861, 2334, 2401
SmiMI	CAYNNNNRTG	2 cut(s)	486, 1194
SmlI	CTYRAG	6 cut(s)	313, 1450, 2417, 2434, 2660, 2870
SmoI	CTYRAG	6 cut(s)	313, 1450, 2417, 2434, 2660, 2870
SsiI	CCGC	8 cut(s)	44, 588, 729, 907, 1726, 1870, 2593, 2616
SspI	AATATT	1 cut(s)	2286
SspMI	CTAG	2 cut(s)	1151, 1155
SstI	GAGCTC	1 cut(s)	2052
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	5 cut(s)	692, 1186, 1669, 2268, 2674
TaiI	ACGT	5 cut(s)	1415, 1957, 2044, 2084, 2652
TaqI	TCGA	7 cut(s)	562, 1639, 1744, 1964, 2219, 2452, 2458
TatI	WGTACW	1 cut(s)	1326
TauI	GCSGC	3 cut(s)	46, 591, 909
TfiI	GAWTC	6 cut(s)	239, 974, 1746, 1827, 2029, 2279
TscAI	CASTG	2 cut(s)	891, 2493
TseFI	GTSAC	2 cut(s)	686, 1710
TseI	GCWGC	4 cut(s)	212, 2320, 2425, 2496
Tsp45I	GTSAC	2 cut(s)	686, 1710
TspRI	CASTG	2 cut(s)	891, 2493
VpaK11BI	GGWCC	3 cut(s)	1861, 2334, 2401
XapI	RAATTY	8 cut(s)	618, 1006, 1048, 1062, 1336, 2522, 2693, 2774
XceI	RCATGY	3 cut(s)	1586, 2747, 2868
XmnI	GAANNNNTTC	1 cut(s)	1737
XspI	CTAG	2 cut(s)	1151, 1155
ZraI	GACGTC	1 cut(s)	1413
Zsp2I	ATGCAT	1 cut(s)	859

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.