Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002329.1

Orthogroup ID

OG0000069

Physical Location & Seq

Genomic Coordinates Forward (+)

112694 .. 119958

Gene Structure 7265 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002329.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3414 bp

atggctgaaggtgttgttattgttgctgctggagggatcaagaccctcggagacttcatcattcagcaagcgaagttcttgagtggagtcagctatcaagttgagcttgcaaaagttgaactacacttgatccgcggcttcctcagagatgcagatgcaagacaaggagaagaagaggtagtccgcgtttgggttaaactgattagagatgctgcttatgacttggaggatgtcattgaatcttttgccttgaaagtggcttccaggaggagaggaggtactgtgaagattgctctcaaaaggtttgccagcatctttaatgaaggagttaaccgatacaagattgggtccgaaattgaggatattatgaccaaactttctcatttgaggtcgagtttgcaaagttataacatcaggcaaataagtgggggtgatggtgtcggccgtgtcgcttcttcttttaagaggcaactagaccgacggctaacttatgctcatgaagttgaaagtcatactgttggcttagaggaaaacacagatatactagtgaaggagttggtgagagaaggaaagcgtcaccgtgttgtttctatttgggggatgggcggctctggaaaaaccactcttgcaaaacaggttttccttcaaaatgaagttaagcgtcattttgattgttttgcttgggtctgtatatctcaacaatgggaaggaaaggatgtattggaagatattataattaaactcacttccccaacagcagataaaaggagagaaatttccaaaatgaaaaaggatgaaatagcaagggaggtctttagtatccaacgagaaaagagatgtctggtggtccttgatgacatatggactcaagaggcttggcattcgataaaagctggattcccaatcaatgaggaaacagagagccggatattactcactactcgcaagaaagaagttgccttgcttgcttccaaaaatgatcatctccaccaacctcgaccactagatgacaaccagagctgggaactgtttgaaaagatagcgatgtgtggaagcgacaaaacagacttggaaatttatgcaaagaagagagaattaggaaagaagatgcttgtacattgttcaggtttaccattagccatcaatgtgctcgctggtcttcttagtagacgagagacgattgatgagtgggatgcagtacttcttaatgttgatgtatacataatgagaggcataaatgtccttgaaagagaaaagacaggtcaggagtgtggtgtttcaggtgtcttggcattgagttatgatgacttaccatctcacttaaaactatgctttttgtatttagcccaatttcctgaggatcatgagatacgggtaaaaagacttactcaattatggattgcagaaggatttataacttcaacgtcagaaatgcatgtttcaggggaaattttggaagaattgtcatatagttgcctagttgaattggtggaaagatctatggttcaagttgtagaatatggtttaagtgggaaggtgaaaacttgcggtctccatgattttatgcgagacttgtgcttgcaaaaggcagaagaggagaattttctccgaattattaacttttctacgggactggtatctaagacaccactaattggcaaggttcgaagacttgccctccatttggacgaaaatgttaaatatgatttcagtatagatggaagagatgagcatattaggtctctattatactttaccccaaaagggtttgaccaaaagtggaacaaaaaagtaatgcgatcagtattcaatgacttcaaattgcttagagttctgaagtttgaaaaaatagagagagaatttcagttaccgaaaacgattgggaatctagtccacttgaggtttctgagtctgaagcatagtgcatatagtgggttgccatcatctgtatctaatctggtacttttgcaaactctagatctgcggtataattattatttatatgaaggatcttgttttggtcgggagagggcaaccagaattagaaatgtgttttggaatatggagcaactgaggcatttatatttaccttggcgtcactatataagtgaacagaaactctcatttgcaaggctgtgcaatttgcagacgttgggtgatcttccaattgagaaatgtgagttaaatgatcttgttcagttaagcaatctgaagaaaatatccataatcgtatcacagcctagtcacttggaaaagttcaagaacatgttgatatcaagaagtataacatatgagcatcttcgatcgctatctttgaagctaaaccgagatgataatgaggagatagcaagagatatagtgttaaggtgtccttatttatacaaactacgactgcttgggaaaatgacggagtttccagaagagctcctgggctatccaaaactcaccaagataacgctggttagtacagaactgagatgtgaccagatagatatagtgaagatgctgcccaagttaagggtgctttacctgggtcgtgatgctttcaagtcaaaaacaatggttttctccccaggaggctttcctcatctggaatttcttacactaagtgctttgtttatgttgaacgagtggagggtggagaaagaagccatgcctattcttcagagattgcatattgaatggtgcttacaattgtgggaagtaccagatgggcttcagcatattactaccctcaaggaattaacaatcaatgtgatgaccagtagattctgcagtaggattggggaagaaggagaggatttctacaaaattaaacatgtgccttctattataatcaccaatatacaacccgactacaagaaagacaaggagccagaaatggaggaagcagctggtgcgtctcgagtagttgctaatgactctgaggaatcaactgtggacgaacgaccagatcgtcttcttcttggacttcaacgtcatcagaccagctacctccatcgcctgtcaagatcggcttcatcttcctcgttcagacccaaccttttgcttgggcaccagaaaatcaatttctccagaaaagtttcctccaccacgccgtcctgccgtttgctccgttcagtgacaacatcatcagatgagcctcagattgacaggagacgtcattcaaccaagttgctccaatcccattccagacggagcctgagcgggagtttatcttccacctctgcgagcggctgggtttcagctggctggagggaatcgtgtgctgaactgccattgatcagtcgccctacagctcagccttcaggcacttgtccattggcctacatgagatgttcttggcaacctcaaagcagccccgggtggagtagcagctcagggaggagatcgagggtctccagagggagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0002230 GO:0002238 GO:0002239 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009615 GO:0009620 GO:0009626 GO:0009628 GO:0009637 GO:0009642 GO:0009646 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0012501 GO:0014070 GO:0016020 GO:0023052 GO:0030054 GO:0031347 GO:0032101 GO:0032870 GO:0033554 GO:0034050 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0043207 GO:0043900 GO:0044464 GO:0045087 GO:0046677 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071944 GO:0080134 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

1137

Amino Acids

130.33

Weight (kDa)

8.97

Isoelectric Point (pI)

53.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G50180 AT1G53350 AT1G58390 AT1G58390 AT1G58400 AT1G58400 AT1G58400 AT1G58410 AT1G58410 AT1G58410 AT1G58410 AT1G58602 AT1G58602 AT1G58807 AT1G58807 AT1G58848 AT1G58848 AT1G59124 AT1G59124 AT1G59218 AT1G59218 AT1G59218 AT1G59620 AT1G59780 AT1G59780 AT5G35450 AT5G35450 AT5G43470 AT5G43470 AT5G43470 AT5G43470 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620
fragaria_vesca	FvH4_4g04072 FvH4_4g22931 FvH4_4g22931 FvH4_4g22940 FvH4_6g49940 FvH4_6g49940 FvH4_7g08100 FvH4_7g08870 FvH4_7g08870 FvH4_7g09280 FvH4_7g09290 FvH4_7g15190 FvH4_7g15200 FvH4_7g15240 FvH4_7g15240 FvH4_7g33440
malus_domestica	MD00G1174600.v1.1 MD01G1113700.v1.1 MD03G1071300.v1.1 MD04G1041500.v1.1 MD04G1238000.v1.1 MD07G1029000.v1.1 MD07G1092100.v1.1 MD07G1092300.v1.1 MD07G1092600.v1.1 MD12G1256300.v1.1 MD13G1128200.v1.1 MD13G1128400.v1.1 MD17G1268000.v1.1
prunus_persica	Prupe.1G041300_v2.0.a1 Prupe.1G041300_v2.0.a1 Prupe.1G042900_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043600_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G046700_v2.0.a1 Prupe.1G047700_v2.0.a1 Prupe.1G047900_v2.0.a1 Prupe.1G048000_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G049900_v2.0.a1 Prupe.1G051500_v2.0.a1 Prupe.1G051800_v2.0.a1 Prupe.1G051900_v2.0.a1 Prupe.1G052200_v2.0.a1 Prupe.1G194900_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117300_v2.0.a1 Prupe.2G117400_v2.0.a1 Prupe.2G117500_v2.0.a1 Prupe.2G117700_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G119900_v2.0.a1
pyrus_communis	pycom03g05750 pycom04g21110 pycom07g07530 pycom07g07590 pycom13g11110 pycom13g11140 pycom13g11160 pycom13g11170 pycom17g26680
rosa_chinensis	RchiOBHm_Chr1g0341231 RchiOBHm_Chr1g0344091 RchiOBHm_Chr1g0344161 RchiOBHm_Chr1g0345001 RchiOBHm_Chr1g0345351 RchiOBHm_Chr1g0345371 RchiOBHm_Chr1g0345391 RchiOBHm_Chr1g0345531 RchiOBHm_Chr1g0345551 RchiOBHm_Chr1g0345571 RchiOBHm_Chr1g0345581 RchiOBHm_Chr1g0345661 RchiOBHm_Chr1g0345691 RchiOBHm_Chr1g0345761 RchiOBHm_Chr1g0345791 RchiOBHm_Chr1g0345821 RchiOBHm_Chr1g0345911 RchiOBHm_Chr1g0345941 RchiOBHm_Chr1g0357611 RchiOBHm_Chr1g0357911 RchiOBHm_Chr1g0357921 RchiOBHm_Chr1g0357931 RchiOBHm_Chr1g0357971 RchiOBHm_Chr1g0358121 RchiOBHm_Chr1g0383491 RchiOBHm_Chr1g0383511 RchiOBHm_Chr1g0383521 RchiOBHm_Chr3g0480581 RchiOBHm_Chr4g0394341 RchiOBHm_Chr4g0394361 RchiOBHm_Chr4g0394411 RchiOBHm_Chr4g0394441 RchiOBHm_Chr4g0407681 RchiOBHm_Chr4g0429191 RchiOBHm_Chr4g0429201 RchiOBHm_Chr4g0429211 RchiOBHm_Chr4g0429221 RchiOBHm_Chr6g0265091
rosa_laevigata	RLG00000007088 RLG00000008700 RLG00000009190 RLG00000009702 RLG00000014210 RLG00000028829 RLG00000028833 RLG00000028837 RLG00000028838 RLG00000028921 RLG00000028926
rosa_multiflora	Rmu_co8366955.1_g000001 Rmu_co8394205.1_g000001 Rmu_sc0000019.1_g000001 Rmu_sc0000054.1_g000031 Rmu_sc0000054.1_g000033 Rmu_sc0000200.1_g000002 Rmu_sc0000200.1_g000007 Rmu_sc0000200.1_g000018 Rmu_sc0000200.1_g000020 Rmu_sc0000200.1_g000021 Rmu_sc0000251.1_g000012 Rmu_sc0000251.1_g000015 Rmu_sc0000251.1_g000028 Rmu_sc0000253.1_g000015 Rmu_sc0000255.1_g000045 Rmu_sc0000255.1_g000046 Rmu_sc0001292.1_g000013 Rmu_sc0001292.1_g000018 Rmu_sc0001292.1_g000028 Rmu_sc0001292.1_g000029 Rmu_sc0001349.1_g000006 Rmu_sc0001349.1_g000014 Rmu_sc0001582.1_g000006 Rmu_sc0001582.1_g000018 Rmu_sc0001582.1_g000020 Rmu_sc0001692.1_g000007 Rmu_sc0001692.1_g000024 Rmu_sc0001692.1_g000026 Rmu_sc0001692.1_g000029 Rmu_sc0001692.1_g000030 Rmu_sc0001835.1_g000006 Rmu_sc0001835.1_g000010 Rmu_sc0002071.1_g000005 Rmu_sc0002276.1_g000002 Rmu_sc0002276.1_g000009 Rmu_sc0002329.1_g000018 Rmu_sc0002329.1_g000023 Rmu_sc0002329.1_g000025 Rmu_sc0002523.1_g000005 Rmu_sc0003573.1_g000005 Rmu_sc0003573.1_g000006 Rmu_sc0004099.1_g000021 Rmu_sc0005812.1_g000009 Rmu_sc0006271.1_g000002 Rmu_sc0006287.1_g000038 Rmu_sc0006439.1_g000008 Rmu_sc0007456.1_g000004 Rmu_sc0007581.1_g000009 Rmu_sc0007849.1_g000014 Rmu_sc0008115.1_g000012 Rmu_sc0010521.1_g000004 Rmu_sc0012471.1_g000017 Rmu_sc0014762.1_g000001 Rmu_sc0015150.1_g000003 Rmu_sc0017221.1_g000001 Rmu_sc0017299.1_g000001 Rmu_sc0017299.1_g000002 Rmu_sc0021457.1_g000001 Rmu_sc0022067.1_g000001 Rmu_sc0033275.1_g000001 Rmu_ssc0000245.1_g000012 Rmu_ssc0000359.1_g000035 Rmu_ssc0000359.1_g000067 Rmu_ssc0000359.1_g000072 Rmu_ssc0000434.1_g000005 Rmu_ssc0000434.1_g000007
rosa_roxburghii	Rroxscaffold_4G00298420 Rroxscaffold_4G00298720 Rroxscaffold_4G00308990 Rroxscaffold_4G00309000 Rroxscaffold_4G00309010 Rroxscaffold_4G00309050 Rroxscaffold_4G00309070 Rroxscaffold_4G00309100 Rroxscaffold_4G00310030 Rroxscaffold_4G00310050 Rroxscaffold_4G00311880 Rroxscaffold_5G00339420 Rroxscaffold_5G00339450 Rroxscaffold_5G00344880 Rroxscaffold_5G00352270 Rroxscaffold_5G00362240 Rroxscaffold_5G00370840 Rroxscaffold_7G00202970
rosa_rugosa	Rorug01G0159100.1 Rorug01G0159200.1 Rorug01G0171700 Rorug01G0171900 Rorug01G0172000 Rorug01G0191700 Rorug01G0191800 Rorug01G0256900 Rorug01G0257000 Rorug01G0257100 Rorug03G0198000 Rorug03G0366300.1 Rorug03G0366400.1 Rorug03G0366500.1 Rorug04G0081200 Rorug04G0081200 Rorug04G0081200 Rorug04G0233700 Rorug04G0233800 Rorug04G0233800 Rorug06G0013300
rosa_samantha	Rh1CG138800 Rh1CG161300 Rh1CG173800 Rh1CG179800 Rh1CG180100 Rh1CG180500 Rh1CG180800 Rh1CG180900 Rh1CG194100 Rh1DG205100 Rh3AG236300 Rh4AG052000 Rh4AG052100 Rh4AG145900 Rh4AG289700 Rh4AG289800 Rh6AG136800 Rh6AG137300 Rh6BG133600 Rh6CG132000 Rh6CG134000 Rh6DG119300
rosa_wichuraiana	Rw0G003420 Rw1G015500 Rw1G016110 Rw1G016180 Rw1G016210 Rw1G016230 Rw1G016280 Rw1G016440 Rw1G016450 Rw1G016460 Rw1G016480 Rw1G017490 Rw1G024140 Rw1G024160 Rw3G022530 Rw4G004140 Rw4G004190 Rw4G011850 Rw6G011800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	408, 734, 1415, 2834
AasI	GACNNNNNNGTC	2 cut(s)	2955, 2976
AatII	GACGTC	1 cut(s)	3163
AccB1I	GGYRCC	1 cut(s)	3054
AccB7I	CCANNNNNTGG	1 cut(s)	1655
AccBSI	CCGCTC	2 cut(s)	3207, 3234
AccI	GTMKAC	2 cut(s)	1168, 1218
AccII	CGCG	2 cut(s)	135, 186
AciI	CCGC	8 cut(s)	133, 135, 184, 606, 1548, 1984, 3207, 3234
AclWI	GGATC	4 cut(s)	44, 124, 1368, 2017
AcoI	YGGCCR	1 cut(s)	442
AcsI	RAATTY	6 cut(s)	774, 1074, 1449, 1600, 1859, 2594
AcuI	CTGAAG	7 cut(s)	27, 1856, 1934, 2231, 2648, 2702, 3291
AcyI	GRCGYC	2 cut(s)	2095, 3160
AdeI	CACNNNGTG	1 cut(s)	2609
AfaI	GTAC	6 cut(s)	280, 1116, 1200, 1962, 2467, 2706
AfiI	CCNNNNNNNGG	6 cut(s)	190, 1021, 1655, 1684, 1764, 2517
AflIII	ACRYGT	2 cut(s)	2265, 2818
AhlI	ACTAGT	1 cut(s)	544
AjnI	CCWGG	4 cut(s)	263, 2427, 2529, 2572
AjuI	GAANNNNNNNTTGG	2 cut(s)	2038, 2070
Alw21I	GWGCWC	2 cut(s)	1152, 2427
Alw26I	GTCTC	8 cut(s)	45, 1169, 1556, 1563, 1746, 2907, 3151, 3403
AlwI	GGATC	4 cut(s)	44, 124, 1368, 2017
Ama87I	CYCGRG	2 cut(s)	2904, 3362
AoxI	GGCC	2 cut(s)	442, 3324
ApeKI	GCWGC	6 cut(s)	26, 212, 2506, 2891, 3357, 3375
ApoI	RAATTY	6 cut(s)	774, 1074, 1449, 1600, 1859, 2594
Asp700I	GAANNNNTTC	1 cut(s)	3082
AspS9I	GGNCC	2 cut(s)	348, 847
AsuC2I	CCSGG	2 cut(s)	3363, 3364
AsuHPI	GGTGA	7 cut(s)	443, 569, 571, 1549, 2168, 2437, 2830
AsuII	TTCGAA	1 cut(s)	1666
AvaI	CYCGRG	2 cut(s)	2904, 3362
AvaII	GGWCC	2 cut(s)	348, 847
AxyI	CCTNAGG	1 cut(s)	1356
BaeGI	GKGCMC	1 cut(s)	3057
BanI	GGYRCC	1 cut(s)	3054
BanII	GRGCYC	1 cut(s)	2427
BbsI	GAAGAC	3 cut(s)	1151, 1675, 2951
Bbv12I	GWGCWC	2 cut(s)	1152, 2427
BbvI	GCAGC	6 cut(s)	13, 199, 2493, 2903, 3369, 3387
BccI	CCATC	8 cut(s)	428, 595, 1148, 1321, 1712, 1948, 2705, 3006
BceAI	ACGGC	4 cut(s)	429, 497, 3082, 3090
BcgI	CGANNNNNNTGC	2 cut(s)	1557, 1591
BciT130I	CCWGG	4 cut(s)	265, 2429, 2531, 2574
BciVI	GTATCC	1 cut(s)	830
BclI	TGATCA	2 cut(s)	979, 3282
BcnI	CCSGG	2 cut(s)	3363, 3364
BcoDI	GTCTC	8 cut(s)	45, 1169, 1556, 1563, 1746, 2907, 3151, 3403
BcuI	ACTAGT	1 cut(s)	544
BfaI	CTAG	8 cut(s)	473, 545, 1004, 1478, 1889, 1976, 2241, 3412
BfmI	CTRYAG	2 cut(s)	2773, 3294
BfuI	GTATCC	1 cut(s)	830
BglII	AGATCT	2 cut(s)	1496, 1978
BisI	GCNGC	9 cut(s)	27, 136, 213, 607, 2507, 2892, 3235, 3358, 3376
BlpI	GCTNAGC	1 cut(s)	3300
BlsI	GCNGC	9 cut(s)	28, 137, 214, 608, 2508, 2893, 3236, 3359, 3377
BmcAI	AGTACT	1 cut(s)	1200
Bme1390I	CCNGG	6 cut(s)	265, 2429, 2531, 2574, 3363, 3364
Bme18I	GGWCC	2 cut(s)	348, 847
BmeT110I	CYCGRG	2 cut(s)	2904, 3362
BmgT120I	GGNCC	2 cut(s)	348, 847
BmiI	GGNNCC	4 cut(s)	349, 2874, 3056, 3200
BmrFI	CCNGG	6 cut(s)	265, 2429, 2531, 2574, 3363, 3364
BmsI	GCATC	9 cut(s)	139, 145, 199, 321, 1098, 1183, 2305, 2493, 2530
BpiI	GAAGAC	3 cut(s)	1151, 1675, 2951
BpmI	CTGGAG	4 cut(s)	51, 3058, 3274, 3385
Bpu10I	CCTNAGC	2 cut(s)	3203, 3379
Bpu1102I	GCTNAGC	1 cut(s)	3300
Bpu14I	TTCGAA	1 cut(s)	1666
BpuEI	CTTGAG	4 cut(s)	100, 852, 1918, 2720
BpuMI	CCSGG	2 cut(s)	3363, 3364
BsaBI	GATNNNNATC	1 cut(s)	2308
BsaHI	GRCGYC	2 cut(s)	2095, 3160
BsaI	GGTCTC	3 cut(s)	1556, 1746, 3403
BsaJI	CCNNGG	8 cut(s)	46, 133, 2090, 2428, 2530, 2572, 3361, 3362
BsaXI	ACNNNNNCTCC	6 cut(s)	262, 267, 292, 297, 1662, 1692
Bsc4I	CCNNNNNNNGG	6 cut(s)	190, 1021, 1655, 1684, 1764, 2517
Bse1I	ACTGG	2 cut(s)	1638, 2763
Bse21I	CCTNAGG	1 cut(s)	1356
Bse8I	GATNNNNATC	1 cut(s)	2308
BseBI	CCWGG	4 cut(s)	265, 2429, 2531, 2574
BseDI	CCNNGG	8 cut(s)	46, 133, 2090, 2428, 2530, 2572, 3361, 3362
BseGI	GGATG	5 cut(s)	235, 606, 721, 799, 1198
BseJI	GATNNNNATC	1 cut(s)	2308
BseLI	CCNNNNNNNGG	6 cut(s)	190, 1021, 1655, 1684, 1764, 2517
BseNI	ACTGG	2 cut(s)	1638, 2763
BseRI	GAGGAG	5 cut(s)	283, 288, 1610, 2354, 3400
BseSI	GKGCMC	1 cut(s)	3057
BseX3I	CGGCCG	1 cut(s)	442
BseXI	GCAGC	6 cut(s)	13, 199, 2493, 2903, 3369, 3387
BseYI	CCCAGC	2 cut(s)	1020, 3237
Bsh1236I	CGCG	2 cut(s)	135, 186
Bsh1285I	CGRYCG	2 cut(s)	445, 2306
BshFI	GGCC	2 cut(s)	444, 3326
BshNI	GGYRCC	1 cut(s)	3054
BsiEI	CGRYCG	2 cut(s)	445, 2306
BsiHKAI	GWGCWC	2 cut(s)	1152, 2427
BsiHKCI	CYCGRG	2 cut(s)	2904, 3362
BsiSI	CCGG	2 cut(s)	925, 3363
BslFI	GGGAC	1 cut(s)	1644
BslI	CCNNNNNNNGG	6 cut(s)	190, 1021, 1655, 1684, 1764, 2517
BsmAI	GTCTC	8 cut(s)	45, 1169, 1556, 1563, 1746, 2907, 3151, 3403
BsmBI	CGTCTC	3 cut(s)	1169, 2907, 3151
BsmFI	GGGAC	1 cut(s)	1644
BsmI	GAATGC	1 cut(s)	880
BsnI	GGCC	2 cut(s)	444, 3326
Bso31I	GGTCTC	3 cut(s)	1556, 1746, 3403
BsoBI	CYCGRG	2 cut(s)	2904, 3362
Bsp119I	TTCGAA	1 cut(s)	1666
Bsp1286I	GDGCHC	3 cut(s)	1152, 2427, 3057
Bsp1407I	TGTACA	1 cut(s)	1114
Bsp1720I	GCTNAGC	1 cut(s)	3300
BspACI	CCGC	8 cut(s)	133, 135, 184, 606, 1548, 1984, 3207, 3234
BspANI	GGCC	2 cut(s)	444, 3326
BspFNI	CGCG	2 cut(s)	135, 186
BspHI	TCATGA	2 cut(s)	496, 1363
BspLI	GGNNCC	4 cut(s)	349, 2874, 3056, 3200
BspMAI	CTGCAG	1 cut(s)	2777
BspPI	GGATC	4 cut(s)	44, 124, 1368, 2017
BspQI	GCTCTTC	1 cut(s)	2415
BspT104I	TTCGAA	1 cut(s)	1666
BspT107I	GGYRCC	1 cut(s)	3054
BspTNI	GGTCTC	3 cut(s)	1556, 1746, 3403
BsrBI	CCGCTC	2 cut(s)	3207, 3234
BsrGI	TGTACA	1 cut(s)	1114
BsrI	ACTGG	2 cut(s)	1638, 2763
BssECI	CCNNGG	8 cut(s)	46, 133, 2090, 2428, 2530, 2572, 3361, 3362
BssNAI	GTATAC	1 cut(s)	1219
BssNI	GRCGYC	2 cut(s)	2095, 3160
BssT1I	CCWWGG	1 cut(s)	2090
Bst1107I	GTATAC	1 cut(s)	1219
Bst2UI	CCWGG	4 cut(s)	265, 2429, 2531, 2574
Bst4CI	ACNGT	5 cut(s)	283, 517, 581, 1029, 2938
Bst6I	CTCTTC	5 cut(s)	168, 1082, 1587, 1717, 2415
BstACI	GRCGYC	2 cut(s)	2095, 3160
BstAPI	GCANNNNNTGC	1 cut(s)	2897
BstAUI	TGTACA	1 cut(s)	1114
BstBI	TTCGAA	1 cut(s)	1666
BstC8I	GCNNGC	8 cut(s)	69, 108, 310, 966, 1152, 1580, 3232, 3250
BstDSI	CCRYGG	1 cut(s)	133
BstF5I	GGATG	5 cut(s)	235, 606, 721, 799, 1198
BstFNI	CGCG	2 cut(s)	135, 186
BstMAI	GTCTC	8 cut(s)	45, 1169, 1556, 1563, 1746, 2907, 3151, 3403
BstMCI	CGRYCG	2 cut(s)	445, 2306
BstMWI	GCNNNNNNNGC	3 cut(s)	965, 2074, 2897
BstNI	CCWGG	4 cut(s)	265, 2429, 2531, 2574
BstNSI	RCATGY	3 cut(s)	1439, 2269, 2822
BstSCI	CCNGG	6 cut(s)	263, 2427, 2529, 2572, 3361, 3362
BstSFI	CTRYAG	2 cut(s)	2773, 3294
BstSLI	GKGCMC	1 cut(s)	3057
BstUI	CGCG	2 cut(s)	135, 186
BstV1I	GCAGC	6 cut(s)	13, 199, 2493, 2903, 3369, 3387
BstV2I	GAAGAC	3 cut(s)	1151, 1675, 2951
BstX2I	RGATCY	3 cut(s)	1496, 1978, 2009
BstYI	RGATCY	3 cut(s)	1496, 1978, 2009
BstZ17I	GTATAC	1 cut(s)	1219
BstZI	CGGCCG	1 cut(s)	442
Bsu36I	CCTNAGG	1 cut(s)	1356
BsuI	GTATCC	1 cut(s)	830
BsuRI	GGCC	2 cut(s)	444, 3326
BtgI	CCRYGG	1 cut(s)	133
BtgZI	GCGATG	2 cut(s)	1058, 2984
BtsCI	GGATG	5 cut(s)	235, 606, 721, 799, 1198
BtsIMutI	CAGTG	1 cut(s)	3126
Cac8I	GCNNGC	8 cut(s)	69, 108, 310, 966, 1152, 1580, 3232, 3250
CciI	TCATGA	2 cut(s)	496, 1363
Cfr13I	GGNCC	2 cut(s)	348, 847
Cfr42I	CCGCGG	1 cut(s)	136
Cfr9I	CCCGGG	1 cut(s)	3362
CseI	GACGC	4 cut(s)	563, 650, 2084, 2889
Csp6I	GTAC	6 cut(s)	279, 1115, 1199, 1961, 2466, 2705
CviAII	CATG	8 cut(s)	497, 1364, 1436, 1556, 2266, 2653, 2819, 3331
CviQI	GTAC	6 cut(s)	279, 1115, 1199, 1961, 2466, 2705
DraIII	CACNNNGTG	1 cut(s)	2609
DrdI	GACNNNNNNGTC	2 cut(s)	2955, 2976
DseDI	GACNNNNNNGTC	2 cut(s)	2955, 2976
EaeI	YGGCCR	1 cut(s)	442
EagI	CGGCCG	1 cut(s)	442
Eam1104I	CTCTTC	5 cut(s)	168, 1082, 1587, 1717, 2415
EarI	CTCTTC	5 cut(s)	168, 1082, 1587, 1717, 2415
Ecl136II	GAGCTC	1 cut(s)	2425
EclXI	CGGCCG	1 cut(s)	442
Eco130I	CCWWGG	1 cut(s)	2090
Eco24I	GRGCYC	1 cut(s)	2427
Eco31I	GGTCTC	3 cut(s)	1556, 1746, 3403
Eco32I	GATATC	1 cut(s)	2274
Eco47I	GGWCC	2 cut(s)	348, 847
Eco52I	CGGCCG	1 cut(s)	442
Eco53kI	GAGCTC	1 cut(s)	2425
Eco57I	CTGAAG	7 cut(s)	27, 1856, 1934, 2231, 2648, 2702, 3291
Eco81I	CCTNAGG	1 cut(s)	1356
Eco88I	CYCGRG	2 cut(s)	2904, 3362
EcoICRI	GAGCTC	1 cut(s)	2425
EcoRII	CCWGG	4 cut(s)	263, 2427, 2529, 2572
EcoRV	GATATC	1 cut(s)	2274
EcoT14I	CCWWGG	1 cut(s)	2090
EcoT22I	ATGCAT	1 cut(s)	1437
EcoT38I	GRGCYC	1 cut(s)	2427
ErhI	CCWWGG	1 cut(s)	2090
Esp3I	CGTCTC	3 cut(s)	1169, 2907, 3151
FaeI	CATG	8 cut(s)	500, 1367, 1439, 1559, 2269, 2656, 2822, 3334
FalI	AAGNNNNNCTT	6 cut(s)	90, 122, 2356, 2388, 3001, 3033
FaqI	GGGAC	1 cut(s)	1644
FatI	CATG	8 cut(s)	496, 1363, 1435, 1555, 2265, 2652, 2818, 3330
FauI	CCCGC	1 cut(s)	3200
FauNDI	CATATG	2 cut(s)	860, 2290
FbaI	TGATCA	2 cut(s)	979, 3282
FblI	GTMKAC	2 cut(s)	1168, 1218
Fnu4HI	GCNGC	9 cut(s)	27, 136, 213, 607, 2507, 2892, 3235, 3358, 3376
FokI	GGATG	5 cut(s)	242, 613, 728, 806, 1205
FriOI	GRGCYC	1 cut(s)	2427
Fsp4HI	GCNGC	9 cut(s)	27, 136, 213, 607, 2507, 2892, 3235, 3358, 3376
FspBI	CTAG	8 cut(s)	473, 545, 1004, 1478, 1889, 1976, 2241, 3412
GluI	GCNGC	9 cut(s)	27, 136, 213, 607, 2507, 2892, 3235, 3358, 3376
GsaI	CCCAGC	2 cut(s)	1024, 3241
GsuI	CTGGAG	4 cut(s)	51, 3058, 3274, 3385
HaeIII	GGCC	2 cut(s)	444, 3326
HapII	CCGG	2 cut(s)	925, 3363
HgaI	GACGC	4 cut(s)	563, 650, 2084, 2889
Hin1I	GRCGYC	2 cut(s)	2095, 3160
Hin1II	CATG	8 cut(s)	500, 1367, 1439, 1559, 2269, 2656, 2822, 3334
HincII	GTYRAC	1 cut(s)	331
HindII	GTYRAC	1 cut(s)	331
HpaI	GTTAAC	1 cut(s)	331
HpaII	CCGG	2 cut(s)	925, 3363
HphI	GGTGA	7 cut(s)	443, 569, 571, 1549, 2168, 2437, 2830
Hpy166II	GTNNAC	7 cut(s)	331, 1130, 1169, 1219, 1894, 2111, 2941
Hpy8I	GTNNAC	7 cut(s)	331, 1130, 1169, 1219, 1894, 2111, 2941
Hpy99I	CGWCG	1 cut(s)	483
HpyCH4III	ACNGT	5 cut(s)	283, 517, 581, 1029, 2938
HpyCH4IV	ACGT	4 cut(s)	1424, 2150, 2977, 3160
HpyF10VI	GCNNNNNNNGC	3 cut(s)	965, 2074, 2897
HpySE526I	ACGT	4 cut(s)	1424, 2150, 2977, 3160
Hsp92I	GRCGYC	2 cut(s)	2095, 3160
Hsp92II	CATG	8 cut(s)	500, 1367, 1439, 1559, 2269, 2656, 2822, 3334
Ksp22I	TGATCA	2 cut(s)	979, 3282
KspAI	GTTAAC	1 cut(s)	331
KspI	CCGCGG	1 cut(s)	136
LguI	GCTCTTC	1 cut(s)	2415
LmnI	GCTCC	7 cut(s)	2065, 2430, 2872, 3117, 3183, 3198, 3408
Lsp1109I	GCAGC	6 cut(s)	13, 199, 2493, 2903, 3369, 3387
LweI	GCATC	9 cut(s)	139, 145, 199, 321, 1098, 1183, 2305, 2493, 2530
MaeI	CTAG	8 cut(s)	473, 545, 1004, 1478, 1889, 1976, 2241, 3412
MaeII	ACGT	4 cut(s)	1424, 2150, 2977, 3160
MaeIII	GTNAC	6 cut(s)	575, 1866, 2096, 2243, 2480, 3121
MbiI	CCGCTC	2 cut(s)	3207, 3234
MfeI	CAATTG	2 cut(s)	2166, 2693
MflI	RGATCY	3 cut(s)	1496, 1978, 2009
MhlI	GDGCHC	3 cut(s)	1152, 2427, 3057
MlyI	GAGTC	4 cut(s)	96, 859, 1918, 2915
MmeI	TCCRAC	1 cut(s)	847
Mph1103I	ATGCAT	1 cut(s)	1437
MroXI	GAANNNNTTC	1 cut(s)	3082
MslI	CAYNNNNRTG	1 cut(s)	1145
MspA1I	CMGCKG	3 cut(s)	135, 2894, 3248
MspI	CCGG	2 cut(s)	925, 3363
MspR9I	CCNGG	6 cut(s)	265, 2429, 2531, 2574, 3363, 3364
MunI	CAATTG	2 cut(s)	2166, 2693
Mva1269I	GAATGC	1 cut(s)	880
MvaI	CCWGG	4 cut(s)	265, 2429, 2531, 2574
MvnI	CGCG	2 cut(s)	135, 186
MwoI	GCNNNNNNNGC	3 cut(s)	965, 2074, 2897
NciI	CCSGG	2 cut(s)	3363, 3364
NdeI	CATATG	2 cut(s)	860, 2290
NlaIII	CATG	8 cut(s)	500, 1367, 1439, 1559, 2269, 2656, 2822, 3334
NlaIV	GGNNCC	4 cut(s)	349, 2874, 3056, 3200
NmuCI	GTSAC	5 cut(s)	575, 2096, 2243, 2480, 3121
NsiI	ATGCAT	1 cut(s)	1437
NspI	RCATGY	3 cut(s)	1439, 2269, 2822
NspV	TTCGAA	1 cut(s)	1666
PaeR7I	CTCGAG	1 cut(s)	2904
PagI	TCATGA	2 cut(s)	496, 1363
PciI	ACATGT	2 cut(s)	2265, 2818
PciSI	GCTCTTC	1 cut(s)	2415
PcsI	WCGNNNNNNNCGW	1 cut(s)	2953
PctI	GAATGC	1 cut(s)	880
PdmI	GAANNNNTTC	1 cut(s)	3082
PfeI	GAWTC	6 cut(s)	239, 897, 1885, 2769, 2930, 3260
PflMI	CCANNNNNTGG	1 cut(s)	1655
PfoI	TCCNGGA	1 cut(s)	263
PkrI	GCNGC	9 cut(s)	28, 137, 214, 608, 2508, 2893, 3236, 3359, 3377
Ple19I	CGATCG	1 cut(s)	2306
PleI	GAGTC	4 cut(s)	95, 859, 1917, 2915
PpsI	GAGTC	4 cut(s)	95, 859, 1917, 2915
PscI	ACATGT	2 cut(s)	2265, 2818
PsiI	TTATAA	4 cut(s)	408, 734, 1415, 2834
Psp124BI	GAGCTC	1 cut(s)	2427
Psp6I	CCWGG	4 cut(s)	263, 2427, 2529, 2572
PspFI	CCCAGC	2 cut(s)	1020, 3237
PspGI	CCWGG	4 cut(s)	263, 2427, 2529, 2572
PspN4I	GGNNCC	4 cut(s)	349, 2874, 3056, 3200
PspPI	GGNCC	2 cut(s)	348, 847
PstI	CTGCAG	1 cut(s)	2777
PsuI	RGATCY	3 cut(s)	1496, 1978, 2009
PvuI	CGATCG	1 cut(s)	2306
PvuII	CAGCTG	2 cut(s)	2894, 3248
RsaI	GTAC	6 cut(s)	280, 1116, 1200, 1962, 2467, 2706
RsaNI	GTAC	6 cut(s)	279, 1115, 1199, 1961, 2466, 2705
RseI	CAYNNNNRTG	1 cut(s)	1145
SacI	GAGCTC	1 cut(s)	2427
SacII	CCGCGG	1 cut(s)	136
SapI	GCTCTTC	1 cut(s)	2415
SatI	GCNGC	9 cut(s)	27, 136, 213, 607, 2507, 2892, 3235, 3358, 3376
Sau96I	GGNCC	2 cut(s)	348, 847
ScaI	AGTACT	1 cut(s)	1200
SchI	GAGTC	4 cut(s)	96, 859, 1918, 2915
ScrFI	CCNGG	6 cut(s)	265, 2429, 2531, 2574, 3363, 3364
SduI	GDGCHC	3 cut(s)	1152, 2427, 3057
SfaNI	GCATC	9 cut(s)	139, 145, 199, 321, 1098, 1183, 2305, 2493, 2530
SfcI	CTRYAG	2 cut(s)	2773, 3294
Sfr274I	CTCGAG	1 cut(s)	2904
Sfr303I	CCGCGG	1 cut(s)	136
SfuI	TTCGAA	1 cut(s)	1666
SgrBI	CCGCGG	1 cut(s)	136
SinI	GGWCC	2 cut(s)	348, 847
SlaI	CTCGAG	1 cut(s)	2904
SmaI	CCCGGG	1 cut(s)	3364
SmiMI	CAYNNNNRTG	1 cut(s)	1145
SmlI	CTYRAG	5 cut(s)	79, 867, 1897, 2735, 2904
SmoI	CTYRAG	5 cut(s)	79, 867, 1897, 2735, 2904
SpeI	ACTAGT	1 cut(s)	544
SsiI	CCGC	8 cut(s)	133, 135, 184, 606, 1548, 1984, 3207, 3234
SspMI	CTAG	8 cut(s)	473, 545, 1004, 1478, 1889, 1976, 2241, 3412
SstI	GAGCTC	1 cut(s)	2427
StyD4I	CCNGG	6 cut(s)	263, 2427, 2529, 2572, 3361, 3362
StyI	CCWWGG	1 cut(s)	2090
TaaI	ACNGT	5 cut(s)	283, 517, 581, 1029, 2938
TaiI	ACGT	4 cut(s)	1427, 2153, 2980, 3163
TaqI	TCGA	7 cut(s)	392, 884, 997, 1666, 2302, 2905, 3392
TaqII	GACCGA	1 cut(s)	492
TatI	WGTACW	3 cut(s)	1114, 1198, 2465
TauI	GCSGC	3 cut(s)	138, 609, 3237
TfiI	GAWTC	6 cut(s)	239, 897, 1885, 2769, 2930, 3260
TscAI	CASTG	1 cut(s)	3126
TseFI	GTSAC	5 cut(s)	575, 2096, 2243, 2480, 3121
TseI	GCWGC	6 cut(s)	26, 212, 2506, 2891, 3357, 3375
Tsp45I	GTSAC	5 cut(s)	575, 2096, 2243, 2480, 3121
TspDTI	ATGAA	8 cut(s)	46, 336, 513, 666, 800, 810, 2019, 3009
TspGWI	ACGGA	3 cut(s)	2423, 3104, 3211
TspMI	CCCGGG	1 cut(s)	3362
TspRI	CASTG	1 cut(s)	3126
Van91I	CCANNNNNTGG	1 cut(s)	1655
VpaK11BI	GGWCC	2 cut(s)	348, 847
XapI	RAATTY	6 cut(s)	774, 1074, 1449, 1600, 1859, 2594
XbaI	TCTAGA	1 cut(s)	1975
XceI	RCATGY	3 cut(s)	1439, 2269, 2822
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2455
XhoI	CTCGAG	1 cut(s)	2904
XmaI	CCCGGG	1 cut(s)	3362
XmiI	GTMKAC	2 cut(s)	1168, 1218
XmnI	GAANNNNTTC	1 cut(s)	3082
XspI	CTAG	8 cut(s)	473, 545, 1004, 1478, 1889, 1976, 2241, 3412
ZraI	GACGTC	1 cut(s)	3161
ZrmI	AGTACT	1 cut(s)	1200
Zsp2I	ATGCAT	1 cut(s)	1437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.