Rw3G022530

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Forward (+)
27630837 .. 27637519
6683 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G022530.1

Sequence Viewer

Length: 2955 bp
ATGGCTGAGGCTGTTGTTTCGTTTGTGGTGGAAAGAGTCGGTGACTTCATCATTCAAGAAGGCAGATCCTTGTCCGTCGTCGGCGATCAAGTTAGCCGTGCACATACCGACCTACTATTCATCAGGGGCTTCCTCAAAGATGCAGACACAAAGCGACGAGAAAGTGAGGCAATACGCATTTTTGTTGCCGAAATTAGAGATGTTGCTTATGATTTGGAGGATGTCATTGAGACTTTTGTCTTGAAGGTGGATTCCAAGAGGAAAGGAGGTCTAAAGAATGTTTTGAAGAGGTTGGGGTGCATCTTCATTGAAGGAGTTCGTCGTCACAAGATTGGGTCAGAAATTGGGGTAATTACTACCACGATCTCTGATTTGAAACAGAACTTGCAAACTTATGATATCAAGGAGATAAGGGAGAGTGGAGGTTCGACTTCCTTGCAATGGCATGAGAGGCAACAACAATTGAGGCGTACTTACTCTCATGTTGTCGACCATAATGTTGTTGGGATAGAGGAAAGTGTACATGAATTGGTTGGGCATTTGGTGAAGGAAGAGCATCGCCACCGAGTTGTTTCTATTTGGGGGATGGGGGGGTCCGGGAAGAGCACTCTTGCTAGAGAGGTTTATCATCATAAAGATGTTATGCAACATTTCGATTGTTTTGCTTGGGTGTGTATATCTCAACAATATCAAGTAAGGGATGTTTTGGAGAGGATTTATGTCAAACTTATTTCTGCTACAAAAGAGCAAAGAGAAGAAATTGCAAGATTGAAGGATGATGAAATACCGGGCAGGCTTTCTAGTCTCCAAAATGAAAGAAAATGTTTCATTGTCCTTGATGACATTTGGAAAATCGAGACGTGGGACTTTTTGAAAGCTGCATTTCAACATGATGAGAAATCAAAGAGCAAAGTACTGCTTACCACACGCAATCAAAATGTAGCTTTGCATGCCGATGTGAATGGTTTCCACTACCAACCCCCGCCACTAAATGAGAACAAAAGTTGGGAGTTGTTTGAGAGGATTGCAATGTGTGGAAGGGACGATGCAATAGACGAGGAAGCCTATACGAAGGAGGAATTAGGAAAGAAGATGCTCCCACATTGTGCAGGTCTGCCACTAGCAATCACTGTACTTGCAGGACTTTTAGCTAGAAAGAATACAGTGAGTGAATGGAATACTATACACGAAAATGTATGTGTATACATAAGTAGAGGCATTGACCGCCATGAAGAAGAACATACAAGTGTATCATGGGTGTTGGCATTGAGTTATGATGACTTGCCGTATCACTTAAAACCATGTTTTCTATATTTTGGACACTTTCCAGAGGATCATGAGATCCGGGTGAAGAGTTTGACAAGATTATGGATTGCAGAAGGTTTTATCTCTTTGACACAACAAAGACAAGGTTCAAGGGAAACAATGGAGGATGTAGCATACAATTGGTTGAATGAGTTGGTAGAAAGGTGTGTGATTCAAGTAGGAGAGAGAAGTTCAACTTTTGAGAAAATTAAAACTTGCCGGATGCATGATCTTTTGCGACATTTGTGTTTGTGGAAGGCGGAAGAGGAAAACTTTTTCCAAGTTGTCAAAAGTTCCCGTAAAAATGACGCAATGCATCGTTCTTCTTCCTCCACGGCAACCAGTGCAACATCAATGGGTAAGATTCGAAGACTTGCCATCTACTTGGATGAGAATGATGATAAATTGGTACCCTCAAGAGAGGAAAGAGGTGGGCACCTTAGGTCCTTGTTATATTTTAGCCCCAATGATTCTTATTGGTTTCCTAAAAGGAAAGAATTAATACCTTCTATGTTCGAGGATTTCAAATTACTTAGAGTGTTGAGGGTTGAAGATATGTATGATAGAGAAGTAAAAATAGAGTTGCCCATAGAAATTGGAAACATGGTCCACTTGAGATTTCTAAGTCTAAGGAATAGTGGTGTAATATCGTTTCCACCATTTCTAGGTAACTTGATTTTTTTGCAAACTCTTGATTTCCGTGTTTCAAGGGCTTATAACATGATCATCCCAAATGTGATATGGAAGATGAATAAGTTGAGACATTTATATCTACCGTGGGATTACAGGGCGAGGGGTAAACTGCAACTATCTACTCTTGGTGATTTACAAACTTTAGATTCTATTTCCAGTAGATATTGTGATTTGAATGATCTTGCTAAACTAGGCAATCTAAGGAAACTGAGAATAAGTTTGTCATCAAGCCTATCGAAAAATCTTGAGAAAATCTTGGGAGCTGCAGGCAGCGTGCTCAACTGTATTCAGTCCCTAATTTTACACAACATGGTTGGAATGGAAAGCGGTGCAGAGGTTACTCAAATGGTTGCAAGTTGTGGTCAAATATGCAAGGTGGAGCTGCGGGGGCCCACACTAGAACTACCAAAAGAGTTCCACTCCTATTCAAACCTCACCAAGTTACTTTTGTGGAATTGTGCTCTGAAGGACGACCAAATGGCCATACTAGAGAAGCTGCCCAACCTGAGAAGTCTTAATCTACAGGATAATGTGTTTGAGGAAAATACAAAAGTATTGGTTTTCTCCACTGGAAGCTTTCCTCGTCTTCAGTTTCTTACCCTTTGGTATTTGGAAGGAATAACAGAGTGGAGAGTGGAGGACGGAGCCATGCCTAGTCTCTGCCAAGTGGTCATTGAGCATTGCAGAGGATTGAGTACGGTTCCAGATGGGTTGAGACACCTTACTACCCTCAAGGAATTGAAGATTGAGCGTATGCCTAAACTATTCTGTAGTAAGCTTGAGCAAGGAGGAGAGGACTTCCATAAAAAGGACAACGAAAGATATTCATTGATAGCACCAACCTCGTCACAGGGTTCTTTTCTATGCCTTACGGATAAGGACTTGTGGTGTGATCTCTTGCATCACCGAGTCGATACTCAACGTTGTAGGTTGAGTAGAACAATCACCGAGAAGTAG

Protein Analysis

984

Amino Acids

113.54

Weight (kDa)

7.07

Isoelectric Point (pI)

45.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 5 - 88 3.2e-19 Rx N-terminal domain
NB-ARC PF00931 171 - 346 7.1e-39 NB-ARC domain
WHD_DRP PF23559 442 - 517 8e-19 Disease resistance protein Winged helix domain
LRR_14 PF23598 583 - 916 6.7e-39 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000069)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G50180 AT1G53350 AT1G58390 AT1G58390 AT1G58400 AT1G58400 AT1G58400 AT1G58410 AT1G58410 AT1G58410 AT1G58410 AT1G58602 AT1G58602 AT1G58807 AT1G58807 AT1G58848 AT1G58848 AT1G59124 AT1G59124 AT1G59218 AT1G59218 AT1G59218 AT1G59620 AT1G59780 AT1G59780 AT5G35450 AT5G35450 AT5G43470 AT5G43470 AT5G43470 AT5G43470 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620
fragaria_vesca FvH4_4g04072 FvH4_4g22931 FvH4_4g22931 FvH4_4g22940 FvH4_6g49940 FvH4_6g49940 FvH4_7g08100 FvH4_7g08870 FvH4_7g08870 FvH4_7g09280 FvH4_7g09290 FvH4_7g15190 FvH4_7g15200 FvH4_7g15240 FvH4_7g15240 FvH4_7g33440
malus_domestica MD00G1174600.v1.1 MD01G1113700.v1.1 MD03G1071300.v1.1 MD04G1041500.v1.1 MD04G1238000.v1.1 MD07G1029000.v1.1 MD07G1092100.v1.1 MD07G1092300.v1.1 MD07G1092600.v1.1 MD12G1256300.v1.1 MD13G1128200.v1.1 MD13G1128400.v1.1 MD17G1268000.v1.1
prunus_persica Prupe.1G041300_v2.0.a1 Prupe.1G041300_v2.0.a1 Prupe.1G042900_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043600_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G046700_v2.0.a1 Prupe.1G047700_v2.0.a1 Prupe.1G047900_v2.0.a1 Prupe.1G048000_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G049900_v2.0.a1 Prupe.1G051500_v2.0.a1 Prupe.1G051800_v2.0.a1 Prupe.1G051900_v2.0.a1 Prupe.1G052200_v2.0.a1 Prupe.1G194900_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117300_v2.0.a1 Prupe.2G117400_v2.0.a1 Prupe.2G117500_v2.0.a1 Prupe.2G117700_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G119900_v2.0.a1
pyrus_communis pycom03g05750 pycom04g21110 pycom07g07530 pycom07g07590 pycom13g11110 pycom13g11140 pycom13g11160 pycom13g11170 pycom17g26680
rosa_chinensis RchiOBHm_Chr1g0341231 RchiOBHm_Chr1g0344091 RchiOBHm_Chr1g0344161 RchiOBHm_Chr1g0345001 RchiOBHm_Chr1g0345351 RchiOBHm_Chr1g0345371 RchiOBHm_Chr1g0345391 RchiOBHm_Chr1g0345531 RchiOBHm_Chr1g0345551 RchiOBHm_Chr1g0345571 RchiOBHm_Chr1g0345581 RchiOBHm_Chr1g0345661 RchiOBHm_Chr1g0345691 RchiOBHm_Chr1g0345761 RchiOBHm_Chr1g0345791 RchiOBHm_Chr1g0345821 RchiOBHm_Chr1g0345911 RchiOBHm_Chr1g0345941 RchiOBHm_Chr1g0357611 RchiOBHm_Chr1g0357911 RchiOBHm_Chr1g0357921 RchiOBHm_Chr1g0357931 RchiOBHm_Chr1g0357971 RchiOBHm_Chr1g0358121 RchiOBHm_Chr1g0383491 RchiOBHm_Chr1g0383511 RchiOBHm_Chr1g0383521 RchiOBHm_Chr3g0480581 RchiOBHm_Chr4g0394341 RchiOBHm_Chr4g0394361 RchiOBHm_Chr4g0394411 RchiOBHm_Chr4g0394441 RchiOBHm_Chr4g0407681 RchiOBHm_Chr4g0429191 RchiOBHm_Chr4g0429201 RchiOBHm_Chr4g0429211 RchiOBHm_Chr4g0429221 RchiOBHm_Chr6g0265091
rosa_laevigata RLG00000007088 RLG00000008700 RLG00000009190 RLG00000009702 RLG00000014210 RLG00000028829 RLG00000028833 RLG00000028837 RLG00000028838 RLG00000028921 RLG00000028926
rosa_multiflora Rmu_co8366955.1_g000001 Rmu_co8394205.1_g000001 Rmu_sc0000019.1_g000001 Rmu_sc0000054.1_g000031 Rmu_sc0000054.1_g000033 Rmu_sc0000200.1_g000002 Rmu_sc0000200.1_g000007 Rmu_sc0000200.1_g000018 Rmu_sc0000200.1_g000020 Rmu_sc0000200.1_g000021 Rmu_sc0000251.1_g000012 Rmu_sc0000251.1_g000015 Rmu_sc0000251.1_g000028 Rmu_sc0000253.1_g000015 Rmu_sc0000255.1_g000045 Rmu_sc0000255.1_g000046 Rmu_sc0001292.1_g000013 Rmu_sc0001292.1_g000018 Rmu_sc0001292.1_g000028 Rmu_sc0001292.1_g000029 Rmu_sc0001349.1_g000006 Rmu_sc0001349.1_g000014 Rmu_sc0001582.1_g000006 Rmu_sc0001582.1_g000018 Rmu_sc0001582.1_g000020 Rmu_sc0001692.1_g000007 Rmu_sc0001692.1_g000024 Rmu_sc0001692.1_g000026 Rmu_sc0001692.1_g000029 Rmu_sc0001692.1_g000030 Rmu_sc0001835.1_g000006 Rmu_sc0001835.1_g000010 Rmu_sc0002071.1_g000005 Rmu_sc0002276.1_g000002 Rmu_sc0002276.1_g000009 Rmu_sc0002329.1_g000018 Rmu_sc0002329.1_g000023 Rmu_sc0002329.1_g000025 Rmu_sc0002523.1_g000005 Rmu_sc0003573.1_g000005 Rmu_sc0003573.1_g000006 Rmu_sc0004099.1_g000021 Rmu_sc0005812.1_g000009 Rmu_sc0006271.1_g000002 Rmu_sc0006287.1_g000038 Rmu_sc0006439.1_g000008 Rmu_sc0007456.1_g000004 Rmu_sc0007581.1_g000009 Rmu_sc0007849.1_g000014 Rmu_sc0008115.1_g000012 Rmu_sc0010521.1_g000004 Rmu_sc0012471.1_g000017 Rmu_sc0014762.1_g000001 Rmu_sc0015150.1_g000003 Rmu_sc0017221.1_g000001 Rmu_sc0017299.1_g000001 Rmu_sc0017299.1_g000002 Rmu_sc0021457.1_g000001 Rmu_sc0022067.1_g000001 Rmu_sc0033275.1_g000001 Rmu_ssc0000245.1_g000012 Rmu_ssc0000359.1_g000035 Rmu_ssc0000359.1_g000067 Rmu_ssc0000359.1_g000072 Rmu_ssc0000434.1_g000005 Rmu_ssc0000434.1_g000007
rosa_roxburghii Rroxscaffold_4G00298420 Rroxscaffold_4G00298720 Rroxscaffold_4G00308990 Rroxscaffold_4G00309000 Rroxscaffold_4G00309010 Rroxscaffold_4G00309050 Rroxscaffold_4G00309070 Rroxscaffold_4G00309100 Rroxscaffold_4G00310030 Rroxscaffold_4G00310050 Rroxscaffold_4G00311880 Rroxscaffold_5G00339420 Rroxscaffold_5G00339450 Rroxscaffold_5G00344880 Rroxscaffold_5G00352270 Rroxscaffold_5G00362240 Rroxscaffold_5G00370840 Rroxscaffold_7G00202970
rosa_rugosa Rorug01G0159100.1 Rorug01G0159200.1 Rorug01G0171700 Rorug01G0171900 Rorug01G0172000 Rorug01G0191700 Rorug01G0191800 Rorug01G0256900 Rorug01G0257000 Rorug01G0257100 Rorug03G0198000 Rorug03G0366300.1 Rorug03G0366400.1 Rorug03G0366500.1 Rorug04G0081200 Rorug04G0081200 Rorug04G0081200 Rorug04G0233700 Rorug04G0233800 Rorug04G0233800 Rorug06G0013300
rosa_samantha Rh1CG138800 Rh1CG161300 Rh1CG173800 Rh1CG179800 Rh1CG180100 Rh1CG180500 Rh1CG180800 Rh1CG180900 Rh1CG194100 Rh1DG205100 Rh3AG236300 Rh4AG052000 Rh4AG052100 Rh4AG145900 Rh4AG289700 Rh4AG289800 Rh6AG136800 Rh6AG137300 Rh6BG133600 Rh6CG132000 Rh6CG134000 Rh6DG119300
rosa_wichuraiana Rw0G003420 Rw1G015500 Rw1G016110 Rw1G016180 Rw1G016210 Rw1G016230 Rw1G016280 Rw1G016440 Rw1G016450 Rw1G016460 Rw1G016480 Rw1G017490 Rw1G024140 Rw1G024160 Rw3G022530 Rw4G004140 Rw4G004190 Rw4G011850 Rw6G011800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2022
Acc36I ACCTGC 1 cut(s) 1100
Acc65I GGTACC 1 cut(s) 1714
AccB1I GGYRCC 2 cut(s) 1714, 1740
AccI GTMKAC 2 cut(s) 489, 1203
AciI CCGC 5 cut(s) 983, 1225, 1565, 2325, 2383
AclI AACGTT 1 cut(s) 2920
AclWI GGATC 3 cut(s) 60, 1336, 1341
AcoI YGGCCR 1 cut(s) 2478
AcuI CTGAAG 2 cut(s) 2483, 2570
AdeI CACNNNGTG 1 cut(s) 1106
AfaI GTAC 6 cut(s) 472, 522, 915, 1134, 1716, 2695
AfiI CCNNNNNNNGG 3 cut(s) 441, 1970, 2806
AjiI CACGTC 1 cut(s) 861
AluBI AGCT 8 cut(s) 878, 944, 1151, 2261, 2380, 2494, 2574, 2776
AluI AGCT 8 cut(s) 878, 944, 1151, 2261, 2380, 2494, 2574, 2776
Alw21I GWGCWC 4 cut(s) 103, 608, 2277, 2461
Alw26I GTCTC 6 cut(s) 224, 809, 851, 2059, 2660, 2707
Alw44I GTGCAC 1 cut(s) 99
AlwI GGATC 3 cut(s) 60, 1336, 1341
AoxI GGCC 2 cut(s) 2387, 2478
ApaI GGGCCC 1 cut(s) 2391
ApaLI GTGCAC 1 cut(s) 99
ApeKI GCWGC 5 cut(s) 878, 2261, 2268, 2380, 2494
AseI ATTAAT 1 cut(s) 1805
Asp700I GAANNNNTTC 2 cut(s) 315, 965
Asp718I GGTACC 1 cut(s) 1714
AspS9I GGNCC 5 cut(s) 594, 1749, 1912, 2387, 2388
AsuC2I CCSGG 3 cut(s) 598, 789, 1346
AsuHPI GGTGA 7 cut(s) 53, 556, 1360, 2138, 2425, 2894, 2935
AsuII TTCGAA 1 cut(s) 1672
AvaII GGWCC 3 cut(s) 594, 1749, 1912
AxyI CCTNAGG 1 cut(s) 1745
BaeGI GKGCMC 3 cut(s) 103, 1743, 2391
BaeI ACNNNNGTAYC 2 cut(s) 1233, 1266
BalI TGGCCA 1 cut(s) 2480
BanI GGYRCC 2 cut(s) 1714, 1740
BanII GRGCYC 1 cut(s) 2391
BbsI GAAGAC 2 cut(s) 1681, 2576
Bbv12I GWGCWC 4 cut(s) 103, 608, 2277, 2461
BbvCI CCTCAGC 1 cut(s) 6
BbvI GCAGC 5 cut(s) 865, 2248, 2280, 2367, 2481
BccI CCATC 3 cut(s) 580, 1691, 2699
BceAI ACGGC 3 cut(s) 81, 1270, 1656
BcgI CGANNNNNNTGC 6 cut(s) 418, 452, 644, 678, 2823, 2857
BclI TGATCA 1 cut(s) 2028
BcnI CCSGG 3 cut(s) 598, 789, 1346
BcoDI GTCTC 6 cut(s) 224, 809, 851, 2059, 2660, 2707
BfaI CTAG 9 cut(s) 615, 801, 1121, 1152, 1970, 2189, 2396, 2486, 2652
BfmI CTRYAG 3 cut(s) 2262, 2519, 2767
BfuAI ACCTGC 1 cut(s) 1100
BisI GCNGC 5 cut(s) 879, 2262, 2269, 2381, 2495
BlsI GCNGC 5 cut(s) 880, 2263, 2270, 2382, 2496
BmcAI AGTACT 1 cut(s) 915
Bme1390I CCNGG 3 cut(s) 598, 789, 1346
Bme18I GGWCC 3 cut(s) 594, 1749, 1912
BmgBI CACGTC 1 cut(s) 861
BmgT120I GGNCC 5 cut(s) 594, 1749, 1912, 2387, 2388
BmiI GGNNCC 7 cut(s) 595, 1716, 1742, 2388, 2389, 2644, 2700
BmrFI CCNGG 3 cut(s) 598, 789, 1346
BmsI GCATC 8 cut(s) 130, 309, 565, 1036, 1083, 1518, 1630, 2908
BoxI GACNNNNGTC 1 cut(s) 236
BpiI GAAGAC 2 cut(s) 1681, 2576
BplI GAGNNNNNCTC 2 cut(s) 2402, 2434
Bpu10I CCTNAGC 1 cut(s) 6
Bpu14I TTCGAA 1 cut(s) 1672
BpuEI CTTGAG 5 cut(s) 1705, 1939, 2264, 2714, 2798
BpuMI CCSGG 3 cut(s) 598, 789, 1346
BsaJI CCNNGG 2 cut(s) 1638, 2081
Bsc4I CCNNNNNNNGG 3 cut(s) 441, 1970, 2806
Bse1I ACTGG 3 cut(s) 1647, 2154, 2572
Bse21I CCTNAGG 1 cut(s) 1745
Bse3DI GCAATG 4 cut(s) 446, 1035, 1623, 2677
BseDI CCNNGG 2 cut(s) 1638, 2081
BseGI GGATG 8 cut(s) 226, 591, 706, 781, 1438, 1533, 1699, 2031
BseLI CCNNNNNNNGG 3 cut(s) 441, 1970, 2806
BseMI GCAATG 4 cut(s) 446, 1035, 1623, 2677
BseMII CTCAG 2 cut(s) 2198, 2495
BseNI ACTGG 3 cut(s) 1647, 2154, 2572
BseRI GAGGAG 1 cut(s) 2802
BseSI GKGCMC 3 cut(s) 103, 1743, 2391
BseXI GCAGC 5 cut(s) 865, 2248, 2280, 2367, 2481
BsgI GTGCAG 2 cut(s) 1128, 2349
BshFI GGCC 2 cut(s) 2389, 2480
BshNI GGYRCC 2 cut(s) 1714, 1740
BsiHKAI GWGCWC 4 cut(s) 103, 608, 2277, 2461
BsiSI CCGG 4 cut(s) 597, 788, 1345, 1525
BslFI GGGAC 3 cut(s) 878, 1055, 2275
BslI CCNNNNNNNGG 3 cut(s) 441, 1970, 2806
BsmAI GTCTC 6 cut(s) 224, 809, 851, 2059, 2660, 2707
BsmBI CGTCTC 1 cut(s) 851
BsmFI GGGAC 3 cut(s) 878, 1055, 2275
BsnI GGCC 2 cut(s) 2389, 2480
Bsp119I TTCGAA 1 cut(s) 1672
Bsp120I GGGCCC 1 cut(s) 2387
Bsp1286I GDGCHC 6 cut(s) 103, 608, 1743, 2277, 2391, 2461
Bsp1407I TGTACA 1 cut(s) 520
Bsp143I GATC 9 cut(s) 65, 85, 363, 1333, 1341, 1534, 2028, 2176, 2890
BspACI CCGC 5 cut(s) 983, 1225, 1565, 2325, 2383
BspANI GGCC 2 cut(s) 2389, 2480
BspCNI CTCAG 2 cut(s) 2199, 2496
BspHI TCATGA 1 cut(s) 1336
BspLI GGNNCC 7 cut(s) 595, 1716, 1742, 2388, 2389, 2644, 2700
BspMAI CTGCAG 1 cut(s) 2266
BspMI ACCTGC 1 cut(s) 1100
BspPI GGATC 3 cut(s) 60, 1336, 1341
BspQI GCTCTTC 2 cut(s) 546, 596
BspT104I TTCGAA 1 cut(s) 1672
BspT107I GGYRCC 2 cut(s) 1714, 1740
BsrDI GCAATG 4 cut(s) 446, 1035, 1623, 2677
BsrGI TGTACA 1 cut(s) 520
BsrI ACTGG 3 cut(s) 1647, 2154, 2572
BssECI CCNNGG 2 cut(s) 1638, 2081
BssMI GATC 9 cut(s) 65, 85, 363, 1333, 1341, 1534, 2028, 2176, 2890
BssNAI GTATAC 1 cut(s) 1204
Bst1107I GTATAC 1 cut(s) 1204
Bst4CI ACNGT 5 cut(s) 1132, 1165, 2082, 2282, 2698
Bst6I CTCTTC 5 cut(s) 281, 546, 596, 1346, 1563
BstAPI GCANNNNNTGC 1 cut(s) 1649
BstAUI TGTACA 1 cut(s) 520
BstBI TTCGAA 1 cut(s) 1672
BstC8I GCNNGC 4 cut(s) 794, 951, 2266, 2273
BstDEI CTNAG 8 cut(s) 6, 1745, 1838, 1928, 1934, 2198, 2207, 2504
BstDSI CCRYGG 2 cut(s) 1638, 2081
BstF5I GGATG 8 cut(s) 226, 591, 706, 781, 1438, 1533, 1699, 2031
BstKTI GATC 9 cut(s) 68, 88, 366, 1336, 1344, 1537, 2031, 2179, 2893
BstMAI GTCTC 6 cut(s) 224, 809, 851, 2059, 2660, 2707
BstMBI GATC 9 cut(s) 65, 85, 363, 1333, 1341, 1534, 2028, 2176, 2890
BstMWI GCNNNNNNNGC 5 cut(s) 451, 950, 1224, 1649, 2386
BstNSI RCATGY 1 cut(s) 953
BstPAI GACNNNNGTC 1 cut(s) 236
BstSCI CCNGG 3 cut(s) 596, 787, 1344
BstSFI CTRYAG 3 cut(s) 2262, 2519, 2767
BstSLI GKGCMC 3 cut(s) 103, 1743, 2391
BstV1I GCAGC 5 cut(s) 865, 2248, 2280, 2367, 2481
BstV2I GAAGAC 2 cut(s) 1681, 2576
BstX2I RGATCY 2 cut(s) 65, 1341
BstXI CCANNNNNNTGG 1 cut(s) 1690
BstYI RGATCY 2 cut(s) 65, 1341
BstZ17I GTATAC 1 cut(s) 1204
Bsu36I CCTNAGG 1 cut(s) 1745
BsuRI GGCC 2 cut(s) 2389, 2480
BtgI CCRYGG 2 cut(s) 1638, 2081
BtgZI GCGATG 1 cut(s) 542
BtrI CACGTC 1 cut(s) 861
BtsCI GGATG 8 cut(s) 226, 591, 706, 781, 1438, 1533, 1699, 2031
BtsIMutI CAGTG 4 cut(s) 1128, 1170, 1654, 2565
BveI ACCTGC 1 cut(s) 1100
Cac8I GCNNGC 4 cut(s) 794, 951, 2266, 2273
CciI TCATGA 1 cut(s) 1336
Cfr13I GGNCC 5 cut(s) 594, 1749, 1912, 2387, 2388
CseI GACGC 1 cut(s) 1622
Csp6I GTAC 6 cut(s) 471, 521, 914, 1133, 1715, 2694
CviQI GTAC 6 cut(s) 471, 521, 914, 1133, 1715, 2694
DdeI CTNAG 8 cut(s) 6, 1745, 1838, 1928, 1934, 2198, 2207, 2504
DpnI GATC 9 cut(s) 67, 87, 365, 1335, 1343, 1536, 2030, 2178, 2892
DpnII GATC 9 cut(s) 65, 85, 363, 1333, 1341, 1534, 2028, 2176, 2890
DraIII CACNNNGTG 1 cut(s) 1106
EaeI YGGCCR 1 cut(s) 2478
Eam1104I CTCTTC 5 cut(s) 281, 546, 596, 1346, 1563
EarI CTCTTC 5 cut(s) 281, 546, 596, 1346, 1563
EciI GGCGGA 1 cut(s) 1580
Eco24I GRGCYC 1 cut(s) 2391
Eco32I GATATC 1 cut(s) 400
Eco47I GGWCC 3 cut(s) 594, 1749, 1912
Eco57I CTGAAG 2 cut(s) 2483, 2570
Eco81I CCTNAGG 1 cut(s) 1745
EcoO109I RGGNCCY 2 cut(s) 1749, 2387
EcoRV GATATC 1 cut(s) 400
EcoT22I ATGCAT 2 cut(s) 1533, 1623
EcoT38I GRGCYC 1 cut(s) 2391
Esp3I CGTCTC 1 cut(s) 851
FalI AAGNNNNNCTT 4 cut(s) 903, 935, 1486, 1518
FaqI GGGAC 3 cut(s) 878, 1055, 2275
FauI CCCGC 2 cut(s) 990, 2376
FbaI TGATCA 1 cut(s) 2028
FblI GTMKAC 2 cut(s) 489, 1203
Fnu4HI GCNGC 5 cut(s) 879, 2262, 2269, 2381, 2495
FokI GGATG 8 cut(s) 233, 598, 713, 788, 1445, 1540, 1706, 2018
FriOI GRGCYC 1 cut(s) 2391
Fsp4HI GCNGC 5 cut(s) 879, 2262, 2269, 2381, 2495
FspBI CTAG 9 cut(s) 615, 801, 1121, 1152, 1970, 2189, 2396, 2486, 2652
GluI GCNGC 5 cut(s) 879, 2262, 2269, 2381, 2495
HaeIII GGCC 2 cut(s) 2389, 2480
HapII CCGG 4 cut(s) 597, 788, 1345, 1525
HgaI GACGC 1 cut(s) 1622
HincII GTYRAC 1 cut(s) 490
HindII GTYRAC 1 cut(s) 490
HindIII AAGCTT 2 cut(s) 2572, 2774
HinfI GANTC 7 cut(s) 36, 251, 1477, 1669, 1775, 2144, 2907
HpaII CCGG 4 cut(s) 597, 788, 1345, 1525
HphI GGTGA 7 cut(s) 53, 556, 1360, 2138, 2425, 2894, 2935
Hpy166II GTNNAC 6 cut(s) 101, 490, 521, 1204, 1915, 2105
Hpy188I TCNGA 3 cut(s) 340, 370, 2463
Hpy188III TCNNGA 9 cut(s) 56, 241, 856, 1328, 1337, 1722, 1997, 2243, 2702
Hpy8I GTNNAC 6 cut(s) 101, 490, 521, 1204, 1915, 2105
Hpy99I CGWCG 4 cut(s) 80, 83, 159, 324
HpyCH4III ACNGT 5 cut(s) 1132, 1165, 2082, 2282, 2698
HpyCH4IV ACGT 2 cut(s) 860, 2920
HpyF10VI GCNNNNNNNGC 5 cut(s) 451, 950, 1224, 1649, 2386
HpyF3I CTNAG 8 cut(s) 6, 1745, 1838, 1928, 1934, 2198, 2207, 2504
HpySE526I ACGT 2 cut(s) 860, 2920
KpnI GGTACC 1 cut(s) 1718
Ksp22I TGATCA 1 cut(s) 2028
Kzo9I GATC 9 cut(s) 65, 85, 363, 1333, 1341, 1534, 2028, 2176, 2890
LguI GCTCTTC 2 cut(s) 546, 596
LmnI GCTCC 4 cut(s) 1101, 2258, 2377, 2642
Lsp1109I GCAGC 5 cut(s) 865, 2248, 2280, 2367, 2481
LweI GCATC 8 cut(s) 130, 309, 565, 1036, 1083, 1518, 1630, 2908
MaeI CTAG 9 cut(s) 615, 801, 1121, 1152, 1970, 2189, 2396, 2486, 2652
MaeII ACGT 2 cut(s) 860, 2920
MaeIII GTNAC 6 cut(s) 41, 323, 1973, 2335, 2439, 2844
MalI GATC 9 cut(s) 67, 87, 365, 1335, 1343, 1536, 2030, 2178, 2892
MboI GATC 9 cut(s) 65, 85, 363, 1333, 1341, 1534, 2028, 2176, 2890
MfeI CAATTG 2 cut(s) 461, 1444
MflI RGATCY 2 cut(s) 65, 1341
MhlI GDGCHC 6 cut(s) 103, 608, 1743, 2277, 2391, 2461
MlsI TGGCCA 1 cut(s) 2480
MluNI TGGCCA 1 cut(s) 2480
MlyI GAGTC 2 cut(s) 45, 2916
MmeI TCCRAC 1 cut(s) 2293
Mox20I TGGCCA 1 cut(s) 2480
Mph1103I ATGCAT 2 cut(s) 1533, 1623
MroXI GAANNNNTTC 2 cut(s) 315, 965
MscI TGGCCA 1 cut(s) 2480
MseI TTAA 4 cut(s) 1295, 1515, 1805, 2514
MslI CAYNNNNRTG 4 cut(s) 636, 954, 1191, 1245
Msp20I TGGCCA 1 cut(s) 2480
MspI CCGG 4 cut(s) 597, 788, 1345, 1525
MspR9I CCNGG 3 cut(s) 598, 789, 1346
MunI CAATTG 2 cut(s) 461, 1444
MwoI GCNNNNNNNGC 5 cut(s) 451, 950, 1224, 1649, 2386
NciI CCSGG 3 cut(s) 598, 789, 1346
NdeII GATC 9 cut(s) 65, 85, 363, 1333, 1341, 1534, 2028, 2176, 2890
NlaIV GGNNCC 7 cut(s) 595, 1716, 1742, 2388, 2389, 2644, 2700
NmuCI GTSAC 3 cut(s) 41, 323, 2844
NsiI ATGCAT 2 cut(s) 1533, 1623
NspI RCATGY 1 cut(s) 953
NspV TTCGAA 1 cut(s) 1672
PaeI GCATGC 1 cut(s) 953
PagI TCATGA 1 cut(s) 1336
PciSI GCTCTTC 2 cut(s) 546, 596
PdmI GAANNNNTTC 2 cut(s) 315, 965
PfeI GAWTC 5 cut(s) 251, 1477, 1669, 1775, 2144
PfoI TCCNGGA 1 cut(s) 596
PkrI GCNGC 5 cut(s) 880, 2263, 2270, 2382, 2496
PleI GAGTC 2 cut(s) 44, 2915
PpsI GAGTC 2 cut(s) 44, 2915
PpuMI RGGWCCY 1 cut(s) 1749
PshAI GACNNNNGTC 1 cut(s) 236
PshBI ATTAAT 1 cut(s) 1805
PsiI TTATAA 1 cut(s) 2022
Psp1406I AACGTT 1 cut(s) 2920
Psp5II RGGWCCY 1 cut(s) 1749
PspN4I GGNNCC 7 cut(s) 595, 1716, 1742, 2388, 2389, 2644, 2700
PspOMI GGGCCC 1 cut(s) 2387
PspPI GGNCC 5 cut(s) 594, 1749, 1912, 2387, 2388
PspPPI RGGWCCY 1 cut(s) 1749
PstI CTGCAG 1 cut(s) 2266
PsuI RGATCY 2 cut(s) 65, 1341
RsaI GTAC 6 cut(s) 472, 522, 915, 1134, 1716, 2695
RsaNI GTAC 6 cut(s) 471, 521, 914, 1133, 1715, 2694
RseI CAYNNNNRTG 4 cut(s) 636, 954, 1191, 1245
SalI GTCGAC 1 cut(s) 488
SapI GCTCTTC 2 cut(s) 546, 596
SaqAI TTAA 4 cut(s) 1295, 1515, 1805, 2514
SatI GCNGC 5 cut(s) 879, 2262, 2269, 2381, 2495
Sau3AI GATC 9 cut(s) 65, 85, 363, 1333, 1341, 1534, 2028, 2176, 2890
Sau96I GGNCC 5 cut(s) 594, 1749, 1912, 2387, 2388
ScaI AGTACT 1 cut(s) 915
SchI GAGTC 2 cut(s) 45, 2916
ScrFI CCNGG 3 cut(s) 598, 789, 1346
SduI GDGCHC 6 cut(s) 103, 608, 1743, 2277, 2391, 2461
SfaNI GCATC 8 cut(s) 130, 309, 565, 1036, 1083, 1518, 1630, 2908
SfcI CTRYAG 3 cut(s) 2262, 2519, 2767
SfuI TTCGAA 1 cut(s) 1672
SinI GGWCC 3 cut(s) 594, 1749, 1912
SmiMI CAYNNNNRTG 4 cut(s) 636, 954, 1191, 1245
SmlI CTYRAG 5 cut(s) 1720, 1918, 2243, 2729, 2777
SmoI CTYRAG 5 cut(s) 1720, 1918, 2243, 2729, 2777
SphI GCATGC 1 cut(s) 953
SsiI CCGC 5 cut(s) 983, 1225, 1565, 2325, 2383
SspMI CTAG 9 cut(s) 615, 801, 1121, 1152, 1970, 2189, 2396, 2486, 2652
StyD4I CCNGG 3 cut(s) 596, 787, 1344
TaaI ACNGT 5 cut(s) 1132, 1165, 2082, 2282, 2698
TaiI ACGT 2 cut(s) 863, 2923
TaqI TCGA 8 cut(s) 428, 489, 654, 855, 1672, 1821, 2234, 2910
TatI WGTACW 3 cut(s) 520, 913, 1132
TfiI GAWTC 5 cut(s) 251, 1477, 1669, 1775, 2144
Tru1I TTAA 4 cut(s) 1295, 1515, 1805, 2514
Tru9I TTAA 4 cut(s) 1295, 1515, 1805, 2514
TscAI CASTG 4 cut(s) 1135, 1170, 1654, 2572
TseFI GTSAC 3 cut(s) 41, 323, 2844
TseI GCWGC 5 cut(s) 878, 2261, 2268, 2380, 2494
Tsp45I GTSAC 3 cut(s) 41, 323, 2844
TspGWI ACGGA 4 cut(s) 64, 1994, 2655, 2885
TspRI CASTG 4 cut(s) 1135, 1170, 1654, 2572
VneI GTGCAC 1 cut(s) 99
VpaK11BI GGWCC 3 cut(s) 594, 1749, 1912
VspI ATTAAT 1 cut(s) 1805
XceI RCATGY 1 cut(s) 953
XcmI CCANNNNNNNNNTGG 2 cut(s) 500, 2043
XmiI GTMKAC 2 cut(s) 489, 1203
XmnI GAANNNNTTC 2 cut(s) 315, 965
XspI CTAG 9 cut(s) 615, 801, 1121, 1152, 1970, 2189, 2396, 2486, 2652
ZrmI AGTACT 1 cut(s) 915
Zsp2I ATGCAT 2 cut(s) 1533, 1623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.