Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000200.1

Orthogroup ID

OG0000069

Physical Location & Seq

Genomic Coordinates Reverse (-)

8235 .. 11935

Gene Structure 3701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000200.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2448 bp

atggcagagtctgttgtttcttttgtggtcgaacggctcagagtcttgattgctcaagaagcaagattcttgtctggagtcggcgatcaggttcagcgtgcacaaaccgacctgcagtttatgcaaggcttcctgaaagatgctgatgctaaacaacgagactgtgaaacaattcgcatttttgttgtccaaactagagatgctgcttacgatttggaggatgtcattgaaacttttgtcttgaaagtggcttccaggaggaaaggcggtataaagaatgttctgaagaggtttggatgcattttcatcgaaggagttcgtcttcacaagattgggtcagaaattggggttattacgaccaccatttctgatttgaagcggaacttgcaaagttatgacatactaagagatctaagaaacagtggaggagccacttccattccagcacaagatcagaggcaacaactgaggcgaacctactctcatgttattgagcgtaatgttgtcgggttagaagattgtgtacatgagttggttgggcatttggtgaaggaagagcgtcgccaccgagttgtttctatttatgggatgggcggatctgggaaaacaactattgctaaacaagtttatcatcacaaagaggtaacagaccatttcgattgtttggcttgggtttgtatatctcaacaatatcaagtcagggatgtcttggagaggatttatatcaaacttctttgccccacaaaagaggagagggatgaaattgcaaaattgaaggatgacgaaataccggggaggctttctcgtctccaaaatgaaaaaaaatgtttgattgtccttgatgacatttggaaaagagagacctgggactttttgaaggctgcatttgaatgcgatgaagactcaaaaagcaggatactacttacgacacgcaatgaacaagtagcttcgcatgccgatgagaacggttttcactaccgacctccaccactgaatgagtctgagagttggaagctgtttgagaagattgcaatgagtggaaggaaagctggaataggactttttcccgaggattatgagatcaatgtgaagattttgacaaaattatggattgcagaaggttttatttctctgacacaacaaagacaaggttcaaggcaaacaatggaggatgtggcatacaattggttgaatgagttgaaaaatgaggcaatgcatccagtttcttcttcttcttcttccatggtaacctatgtatcatcaatgggtaagattcgaagacttgccatctacttggatgagaatgatgataaattggtaccctcaagagaggaaagaggtgggcagcttaggtctttgttatattttggccccaacgattataattggtttcctaaaaggaaagaattaataccttccatgttcaaggatttcaaattactcaaagtgttgaggattgaaggtatgtatggtggagaagtagaaatagagctgcctagagaaattggaaacatggtccacttgaggtttctgagtctaaggaacagtaatataaaatcgtttcctccgttcctaggaaacttgatttgtttgcagacacttgatttccgtgttacagatggctacatgtttatcccaaatgtgatatgcaagatgagtaggttaagacatttataccttccatggaggtactgggctagaggtaaactgcagctatctactctcggtgatttgcaaactttaaattctatttcgagtagacattgtgatttgaatgatcttgctaaactaggaaatctaaggaaactgagaataagattgtcatctagccaatcgaaaaatctggagaaaatcttggatgcggcaggctgcgtgctcaacggtattcggtccctgcagttgcacaaccaaatggaaagcggtgcagaggaggttggtcaaatagttgcaaggtgcggtcaaatatacaagttggagctgattgggcccacactagaactatcgaaagagttccactcctattcaaacctcaccaagttacttttgaggaattgtgctctcaaggacgaccaaatggccgtactagagaagctgcccaacctgaaaagtcttcgactgttggaaaatgtgtttgaggaaaatacaaaagtattggttttctccgccggaagctttcctcgtcttcagtttcttgggctttattctttgaaaggaataacagagtggagggtggaggaaggagccatgccttgtctctgcaaatcggtcattaattgttgcagagaattgagtacggttccagatgggctgagacaccttactaccctcaaggaattgaagattgagcatatgcctaaactattttatagtaagcttgaggaaggaggagaagacttccataaagcccaacacatcccttcccttataatccagaattcgtggggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0002230 GO:0002238 GO:0002239 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009615 GO:0009620 GO:0009626 GO:0009628 GO:0009637 GO:0009642 GO:0009646 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0012501 GO:0014070 GO:0016020 GO:0023052 GO:0030054 GO:0031347 GO:0032101 GO:0032870 GO:0033554 GO:0034050 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0043207 GO:0043900 GO:0044464 GO:0045087 GO:0046677 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071944 GO:0080134 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

815

Amino Acids

93.52

Weight (kDa)

8.66

Isoelectric Point (pI)

47.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G50180 AT1G53350 AT1G58390 AT1G58390 AT1G58400 AT1G58400 AT1G58400 AT1G58410 AT1G58410 AT1G58410 AT1G58410 AT1G58602 AT1G58602 AT1G58807 AT1G58807 AT1G58848 AT1G58848 AT1G59124 AT1G59124 AT1G59218 AT1G59218 AT1G59218 AT1G59620 AT1G59780 AT1G59780 AT5G35450 AT5G35450 AT5G43470 AT5G43470 AT5G43470 AT5G43470 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620
fragaria_vesca	FvH4_4g04072 FvH4_4g22931 FvH4_4g22931 FvH4_4g22940 FvH4_6g49940 FvH4_6g49940 FvH4_7g08100 FvH4_7g08870 FvH4_7g08870 FvH4_7g09280 FvH4_7g09290 FvH4_7g15190 FvH4_7g15200 FvH4_7g15240 FvH4_7g15240 FvH4_7g33440
malus_domestica	MD00G1174600.v1.1 MD01G1113700.v1.1 MD03G1071300.v1.1 MD04G1041500.v1.1 MD04G1238000.v1.1 MD07G1029000.v1.1 MD07G1092100.v1.1 MD07G1092300.v1.1 MD07G1092600.v1.1 MD12G1256300.v1.1 MD13G1128200.v1.1 MD13G1128400.v1.1 MD17G1268000.v1.1
prunus_persica	Prupe.1G041300_v2.0.a1 Prupe.1G041300_v2.0.a1 Prupe.1G042900_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043600_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G046700_v2.0.a1 Prupe.1G047700_v2.0.a1 Prupe.1G047900_v2.0.a1 Prupe.1G048000_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G049900_v2.0.a1 Prupe.1G051500_v2.0.a1 Prupe.1G051800_v2.0.a1 Prupe.1G051900_v2.0.a1 Prupe.1G052200_v2.0.a1 Prupe.1G194900_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117300_v2.0.a1 Prupe.2G117400_v2.0.a1 Prupe.2G117500_v2.0.a1 Prupe.2G117700_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G119900_v2.0.a1
pyrus_communis	pycom03g05750 pycom04g21110 pycom07g07530 pycom07g07590 pycom13g11110 pycom13g11140 pycom13g11160 pycom13g11170 pycom17g26680
rosa_chinensis	RchiOBHm_Chr1g0341231 RchiOBHm_Chr1g0344091 RchiOBHm_Chr1g0344161 RchiOBHm_Chr1g0345001 RchiOBHm_Chr1g0345351 RchiOBHm_Chr1g0345371 RchiOBHm_Chr1g0345391 RchiOBHm_Chr1g0345531 RchiOBHm_Chr1g0345551 RchiOBHm_Chr1g0345571 RchiOBHm_Chr1g0345581 RchiOBHm_Chr1g0345661 RchiOBHm_Chr1g0345691 RchiOBHm_Chr1g0345761 RchiOBHm_Chr1g0345791 RchiOBHm_Chr1g0345821 RchiOBHm_Chr1g0345911 RchiOBHm_Chr1g0345941 RchiOBHm_Chr1g0357611 RchiOBHm_Chr1g0357911 RchiOBHm_Chr1g0357921 RchiOBHm_Chr1g0357931 RchiOBHm_Chr1g0357971 RchiOBHm_Chr1g0358121 RchiOBHm_Chr1g0383491 RchiOBHm_Chr1g0383511 RchiOBHm_Chr1g0383521 RchiOBHm_Chr3g0480581 RchiOBHm_Chr4g0394341 RchiOBHm_Chr4g0394361 RchiOBHm_Chr4g0394411 RchiOBHm_Chr4g0394441 RchiOBHm_Chr4g0407681 RchiOBHm_Chr4g0429191 RchiOBHm_Chr4g0429201 RchiOBHm_Chr4g0429211 RchiOBHm_Chr4g0429221 RchiOBHm_Chr6g0265091
rosa_laevigata	RLG00000007088 RLG00000008700 RLG00000009190 RLG00000009702 RLG00000014210 RLG00000028829 RLG00000028833 RLG00000028837 RLG00000028838 RLG00000028921 RLG00000028926
rosa_multiflora	Rmu_co8366955.1_g000001 Rmu_co8394205.1_g000001 Rmu_sc0000019.1_g000001 Rmu_sc0000054.1_g000031 Rmu_sc0000054.1_g000033 Rmu_sc0000200.1_g000002 Rmu_sc0000200.1_g000007 Rmu_sc0000200.1_g000018 Rmu_sc0000200.1_g000020 Rmu_sc0000200.1_g000021 Rmu_sc0000251.1_g000012 Rmu_sc0000251.1_g000015 Rmu_sc0000251.1_g000028 Rmu_sc0000253.1_g000015 Rmu_sc0000255.1_g000045 Rmu_sc0000255.1_g000046 Rmu_sc0001292.1_g000013 Rmu_sc0001292.1_g000018 Rmu_sc0001292.1_g000028 Rmu_sc0001292.1_g000029 Rmu_sc0001349.1_g000006 Rmu_sc0001349.1_g000014 Rmu_sc0001582.1_g000006 Rmu_sc0001582.1_g000018 Rmu_sc0001582.1_g000020 Rmu_sc0001692.1_g000007 Rmu_sc0001692.1_g000024 Rmu_sc0001692.1_g000026 Rmu_sc0001692.1_g000029 Rmu_sc0001692.1_g000030 Rmu_sc0001835.1_g000006 Rmu_sc0001835.1_g000010 Rmu_sc0002071.1_g000005 Rmu_sc0002276.1_g000002 Rmu_sc0002276.1_g000009 Rmu_sc0002329.1_g000018 Rmu_sc0002329.1_g000023 Rmu_sc0002329.1_g000025 Rmu_sc0002523.1_g000005 Rmu_sc0003573.1_g000005 Rmu_sc0003573.1_g000006 Rmu_sc0004099.1_g000021 Rmu_sc0005812.1_g000009 Rmu_sc0006271.1_g000002 Rmu_sc0006287.1_g000038 Rmu_sc0006439.1_g000008 Rmu_sc0007456.1_g000004 Rmu_sc0007581.1_g000009 Rmu_sc0007849.1_g000014 Rmu_sc0008115.1_g000012 Rmu_sc0010521.1_g000004 Rmu_sc0012471.1_g000017 Rmu_sc0014762.1_g000001 Rmu_sc0015150.1_g000003 Rmu_sc0017221.1_g000001 Rmu_sc0017299.1_g000001 Rmu_sc0017299.1_g000002 Rmu_sc0021457.1_g000001 Rmu_sc0022067.1_g000001 Rmu_sc0033275.1_g000001 Rmu_ssc0000245.1_g000012 Rmu_ssc0000359.1_g000035 Rmu_ssc0000359.1_g000067 Rmu_ssc0000359.1_g000072 Rmu_ssc0000434.1_g000005 Rmu_ssc0000434.1_g000007
rosa_roxburghii	Rroxscaffold_4G00298420 Rroxscaffold_4G00298720 Rroxscaffold_4G00308990 Rroxscaffold_4G00309000 Rroxscaffold_4G00309010 Rroxscaffold_4G00309050 Rroxscaffold_4G00309070 Rroxscaffold_4G00309100 Rroxscaffold_4G00310030 Rroxscaffold_4G00310050 Rroxscaffold_4G00311880 Rroxscaffold_5G00339420 Rroxscaffold_5G00339450 Rroxscaffold_5G00344880 Rroxscaffold_5G00352270 Rroxscaffold_5G00362240 Rroxscaffold_5G00370840 Rroxscaffold_7G00202970
rosa_rugosa	Rorug01G0159100.1 Rorug01G0159200.1 Rorug01G0171700 Rorug01G0171900 Rorug01G0172000 Rorug01G0191700 Rorug01G0191800 Rorug01G0256900 Rorug01G0257000 Rorug01G0257100 Rorug03G0198000 Rorug03G0366300.1 Rorug03G0366400.1 Rorug03G0366500.1 Rorug04G0081200 Rorug04G0081200 Rorug04G0081200 Rorug04G0233700 Rorug04G0233800 Rorug04G0233800 Rorug06G0013300
rosa_samantha	Rh1CG138800 Rh1CG161300 Rh1CG173800 Rh1CG179800 Rh1CG180100 Rh1CG180500 Rh1CG180800 Rh1CG180900 Rh1CG194100 Rh1DG205100 Rh3AG236300 Rh4AG052000 Rh4AG052100 Rh4AG145900 Rh4AG289700 Rh4AG289800 Rh6AG136800 Rh6AG137300 Rh6BG133600 Rh6CG132000 Rh6CG134000 Rh6DG119300
rosa_wichuraiana	Rw0G003420 Rw1G015500 Rw1G016110 Rw1G016180 Rw1G016210 Rw1G016230 Rw1G016280 Rw1G016440 Rw1G016450 Rw1G016460 Rw1G016480 Rw1G017490 Rw1G024140 Rw1G024160 Rw3G022530 Rw4G004140 Rw4G004190 Rw4G011850 Rw6G011800

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1383, 2426
Acc36I	ACCTGC	1 cut(s)	120
Acc65I	GGTACC	1 cut(s)	1318
AccB1I	GGYRCC	1 cut(s)	1318
AccI	GTMKAC	1 cut(s)	1759
AciI	CCGC	7 cut(s)	267, 379, 594, 1862, 1920, 1956, 2163
AclWI	GGATC	1 cut(s)	604
AcoI	YGGCCR	1 cut(s)	2076
AcsI	RAATTY	2 cut(s)	1744, 2434
AcuI	CTGAAG	2 cut(s)	305, 2168
AfaI	GTAC	5 cut(s)	525, 1320, 1691, 2082, 2293
AfiI	CCNNNNNNNGG	1 cut(s)	1574
AflIII	ACRYGT	1 cut(s)	1626
AjnI	CCWGG	2 cut(s)	254, 863
Alw21I	GWGCWC	3 cut(s)	103, 1878, 2059
Alw26I	GTCTC	5 cut(s)	153, 812, 854, 2258, 2305
Alw44I	GTGCAC	1 cut(s)	99
AlwI	GGATC	1 cut(s)	604
AlwNI	CAGNNNCTG	1 cut(s)	11
Ama87I	CYCGRG	1 cut(s)	1067
AoxI	GGCC	3 cut(s)	1369, 1985, 2076
ApaI	GGGCCC	1 cut(s)	1989
ApaLI	GTGCAC	1 cut(s)	99
ApeKI	GCWGC	7 cut(s)	203, 881, 1345, 1492, 1711, 1869, 2092
ApoI	RAATTY	2 cut(s)	1744, 2434
AseI	ATTAAT	2 cut(s)	1409, 2271
Asp700I	GAANNNNTTC	3 cut(s)	171, 315, 2009
Asp718I	GGTACC	1 cut(s)	1318
AspA2I	CCTAGG	1 cut(s)	1573
AspS9I	GGNCC	5 cut(s)	1370, 1516, 1890, 1985, 1986
AsuC2I	CCSGG	1 cut(s)	792
AsuHPI	GGTGA	3 cut(s)	559, 1739, 2023
AsuII	TTCGAA	1 cut(s)	1276
AvaI	CYCGRG	1 cut(s)	1067
AvaII	GGWCC	2 cut(s)	1516, 1890
AvrII	CCTAGG	1 cut(s)	1573
BaeGI	GKGCMC	2 cut(s)	103, 1989
BaeI	ACNNNNGTAYC	2 cut(s)	1239, 1272
BanI	GGYRCC	1 cut(s)	1318
BanII	GRGCYC	1 cut(s)	1989
BarI	GAAGNNNNNNTAC	2 cut(s)	507, 539
BbsI	GAAGAC	6 cut(s)	314, 906, 1285, 2102, 2174, 2397
Bbv12I	GWGCWC	3 cut(s)	103, 1878, 2059
BbvI	GCAGC	7 cut(s)	190, 868, 1357, 1479, 1723, 1856, 2079
BccI	CCATC	4 cut(s)	583, 1295, 1613, 2297
BceAI	ACGGC	2 cut(s)	50, 2063
BcgI	CGANNNNNNTGC	2 cut(s)	289, 323
BciT130I	CCWGG	2 cut(s)	256, 865
BciVI	GTATCC	1 cut(s)	909
BcnI	CCSGG	1 cut(s)	792
BcoDI	GTCTC	5 cut(s)	153, 812, 854, 2258, 2305
BfaI	CTAG	8 cut(s)	195, 1497, 1574, 1698, 1790, 1827, 1994, 2084
BfmI	CTRYAG	3 cut(s)	113, 1709, 1895
BfuAI	ACCTGC	1 cut(s)	120
BfuI	GTATCC	1 cut(s)	909
BglII	AGATCT	1 cut(s)	409
BisI	GCNGC	8 cut(s)	204, 882, 1346, 1493, 1712, 1863, 1870, 2093
BlnI	CCTAGG	1 cut(s)	1573
BlsI	GCNGC	8 cut(s)	205, 883, 1347, 1494, 1713, 1864, 1871, 2094
Bme1390I	CCNGG	3 cut(s)	256, 792, 865
Bme18I	GGWCC	2 cut(s)	1516, 1890
BmeT110I	CYCGRG	1 cut(s)	1067
BmgT120I	GGNCC	5 cut(s)	1370, 1516, 1890, 1985, 1986
BmiI	GGNNCC	7 cut(s)	430, 1320, 1372, 1892, 1987, 2242, 2298
BmrFI	CCNGG	3 cut(s)	256, 792, 865
BmrI	ACTGGG	1 cut(s)	1702
BmsI	GCATC	6 cut(s)	130, 136, 190, 287, 1225, 1849
BmuI	ACTGGG	1 cut(s)	1702
BpiI	GAAGAC	6 cut(s)	314, 906, 1285, 2102, 2174, 2397
BplI	GAGNNNNNCTC	4 cut(s)	787, 819, 2000, 2032
BpmI	CTGGAG	2 cut(s)	96, 1865
Bpu10I	CCTNAGC	1 cut(s)	1349
Bpu14I	TTCGAA	1 cut(s)	1276
BpuEI	CTTGAG	6 cut(s)	39, 1309, 1543, 2045, 2312, 2396
BpuMI	CCSGG	1 cut(s)	792
BsaBI	GATNNNNATC	2 cut(s)	722, 1822
BsaI	GGTCTC	1 cut(s)	854
BsaJI	CCNNGG	6 cut(s)	791, 864, 1068, 1242, 1573, 1682
Bsc4I	CCNNNNNNNGG	1 cut(s)	1574
Bse1I	ACTGG	2 cut(s)	1220, 1697
Bse3DI	GCAATG	3 cut(s)	940, 1038, 1218
Bse8I	GATNNNNATC	2 cut(s)	722, 1822
BseBI	CCWGG	2 cut(s)	256, 865
BseDI	CCNNGG	6 cut(s)	791, 864, 1068, 1242, 1573, 1682
BseJI	GATNNNNATC	2 cut(s)	722, 1822
BseLI	CCNNNNNNNGG	1 cut(s)	1574
BseMI	GCAATG	3 cut(s)	940, 1038, 1218
BseMII	CTCAG	6 cut(s)	52, 458, 993, 1523, 1799, 2300
BseNI	ACTGG	2 cut(s)	1220, 1697
BseRI	GAGGAG	4 cut(s)	441, 764, 1943, 2400
BseSI	GKGCMC	2 cut(s)	103, 1989
BseXI	GCAGC	7 cut(s)	190, 868, 1357, 1479, 1723, 1856, 2079
BsgI	GTGCAG	1 cut(s)	1944
BshFI	GGCC	3 cut(s)	1371, 1987, 2078
BshNI	GGYRCC	1 cut(s)	1318
BsiHKAI	GWGCWC	3 cut(s)	103, 1878, 2059
BsiHKCI	CYCGRG	1 cut(s)	1067
BsiSI	CCGG	2 cut(s)	791, 2166
BslFI	GGGAC	2 cut(s)	881, 1876
BslI	CCNNNNNNNGG	1 cut(s)	1574
BsmAI	GTCTC	5 cut(s)	153, 812, 854, 2258, 2305
BsmBI	CGTCTC	1 cut(s)	812
BsmFI	GGGAC	2 cut(s)	881, 1876
BsmI	GAATGC	1 cut(s)	896
BsnI	GGCC	3 cut(s)	1371, 1987, 2078
Bso31I	GGTCTC	1 cut(s)	854
BsoBI	CYCGRG	1 cut(s)	1067
Bsp119I	TTCGAA	1 cut(s)	1276
Bsp120I	GGGCCC	1 cut(s)	1985
Bsp1286I	GDGCHC	4 cut(s)	103, 1878, 1989, 2059
Bsp1407I	TGTACA	1 cut(s)	523
Bsp143I	GATC	6 cut(s)	85, 409, 451, 596, 1080, 1777
Bsp19I	CCATGG	2 cut(s)	1242, 1682
BspACI	CCGC	7 cut(s)	267, 379, 594, 1862, 1920, 1956, 2163
BspANI	GGCC	3 cut(s)	1371, 1987, 2078
BspCNI	CTCAG	6 cut(s)	51, 459, 994, 1524, 1800, 2301
BspLI	GGNNCC	7 cut(s)	430, 1320, 1372, 1892, 1987, 2242, 2298
BspMAI	CTGCAG	3 cut(s)	117, 1713, 1899
BspMI	ACCTGC	1 cut(s)	120
BspPI	GGATC	1 cut(s)	604
BspQI	GCTCTTC	1 cut(s)	549
BspT104I	TTCGAA	1 cut(s)	1276
BspT107I	GGYRCC	1 cut(s)	1318
BspTNI	GGTCTC	1 cut(s)	854
BsrDI	GCAATG	3 cut(s)	940, 1038, 1218
BsrGI	TGTACA	1 cut(s)	523
BsrI	ACTGG	2 cut(s)	1220, 1697
BssECI	CCNNGG	6 cut(s)	791, 864, 1068, 1242, 1573, 1682
BssMI	GATC	6 cut(s)	85, 409, 451, 596, 1080, 1777
BssT1I	CCWWGG	3 cut(s)	1242, 1573, 1682
Bst2UI	CCWGG	2 cut(s)	256, 865
Bst4CI	ACNGT	7 cut(s)	164, 422, 968, 1547, 1883, 2118, 2296
Bst6I	CTCTTC	2 cut(s)	281, 549
BstAPI	GCANNNNNTGC	1 cut(s)	121
BstAUI	TGTACA	1 cut(s)	523
BstBI	TTCGAA	1 cut(s)	1276
BstC8I	GCNNGC	4 cut(s)	99, 954, 1867, 1874
BstDSI	CCRYGG	2 cut(s)	1242, 1682
BstEII	GGTNACC	1 cut(s)	1246
BstKTI	GATC	6 cut(s)	88, 412, 454, 599, 1083, 1780
BstMAI	GTCTC	5 cut(s)	153, 812, 854, 2258, 2305
BstMBI	GATC	6 cut(s)	85, 409, 451, 596, 1080, 1777
BstMWI	GCNNNNNNNGC	5 cut(s)	59, 121, 385, 953, 1984
BstNI	CCWGG	2 cut(s)	256, 865
BstNSI	RCATGY	2 cut(s)	956, 1630
BstPI	GGTNACC	1 cut(s)	1246
BstSCI	CCNGG	3 cut(s)	254, 790, 863
BstSFI	CTRYAG	3 cut(s)	113, 1709, 1895
BstSLI	GKGCMC	2 cut(s)	103, 1989
BstV1I	GCAGC	7 cut(s)	190, 868, 1357, 1479, 1723, 1856, 2079
BstV2I	GAAGAC	6 cut(s)	314, 906, 1285, 2102, 2174, 2397
BstX2I	RGATCY	2 cut(s)	409, 596
BstXI	CCANNNNNNTGG	1 cut(s)	1294
BstYI	RGATCY	2 cut(s)	409, 596
BsuI	GTATCC	1 cut(s)	909
BsuRI	GGCC	3 cut(s)	1371, 1987, 2078
BtgI	CCRYGG	2 cut(s)	1242, 1682
BtgZI	GCGATG	1 cut(s)	909
BtsIMutI	CAGTG	2 cut(s)	427, 989
BveI	ACCTGC	1 cut(s)	120
Cac8I	GCNNGC	4 cut(s)	99, 954, 1867, 1874
CaiI	CAGNNNCTG	1 cut(s)	11
Cfr13I	GGNCC	5 cut(s)	1370, 1516, 1890, 1985, 1986
CseI	GACGC	1 cut(s)	548
Csp6I	GTAC	5 cut(s)	524, 1319, 1690, 2081, 2292
CviAII	CATG	9 cut(s)	485, 527, 953, 1243, 1420, 1513, 1627, 1683, 2245
CviQI	GTAC	5 cut(s)	524, 1319, 1690, 2081, 2292
DpnI	GATC	6 cut(s)	87, 411, 453, 598, 1082, 1779
DpnII	GATC	6 cut(s)	85, 409, 451, 596, 1080, 1777
DraI	TTTAAA	1 cut(s)	1743
EaeI	YGGCCR	1 cut(s)	2076
Eam1104I	CTCTTC	2 cut(s)	281, 549
EarI	CTCTTC	2 cut(s)	281, 549
EciI	GGCGGA	2 cut(s)	609, 2152
Eco130I	CCWWGG	3 cut(s)	1242, 1573, 1682
Eco24I	GRGCYC	1 cut(s)	1989
Eco31I	GGTCTC	1 cut(s)	854
Eco47I	GGWCC	2 cut(s)	1516, 1890
Eco57I	CTGAAG	2 cut(s)	305, 2168
Eco88I	CYCGRG	1 cut(s)	1067
Eco91I	GGTNACC	1 cut(s)	1246
EcoO65I	GGTNACC	1 cut(s)	1246
EcoRI	GAATTC	1 cut(s)	2434
EcoRII	CCWGG	2 cut(s)	254, 863
EcoT14I	CCWWGG	3 cut(s)	1242, 1573, 1682
EcoT22I	ATGCAT	2 cut(s)	302, 1218
EcoT38I	GRGCYC	1 cut(s)	1989
ErhI	CCWWGG	3 cut(s)	1242, 1573, 1682
Esp3I	CGTCTC	1 cut(s)	812
FaeI	CATG	9 cut(s)	488, 530, 956, 1246, 1423, 1516, 1630, 1686, 2248
FalI	AAGNNNNNCTT	2 cut(s)	368, 400
FaqI	GGGAC	2 cut(s)	881, 1876
FatI	CATG	9 cut(s)	484, 526, 952, 1242, 1419, 1512, 1626, 1682, 2244
FauNDI	CATATG	1 cut(s)	2349
FblI	GTMKAC	1 cut(s)	1759
Fnu4HI	GCNGC	8 cut(s)	204, 882, 1346, 1493, 1712, 1863, 1870, 2093
FriOI	GRGCYC	1 cut(s)	1989
Fsp4HI	GCNGC	8 cut(s)	204, 882, 1346, 1493, 1712, 1863, 1870, 2093
FspBI	CTAG	8 cut(s)	195, 1497, 1574, 1698, 1790, 1827, 1994, 2084
GluI	GCNGC	8 cut(s)	204, 882, 1346, 1493, 1712, 1863, 1870, 2093
GsuI	CTGGAG	2 cut(s)	96, 1865
HaeIII	GGCC	3 cut(s)	1371, 1987, 2078
HapII	CCGG	2 cut(s)	791, 2166
HgaI	GACGC	1 cut(s)	548
Hin1II	CATG	9 cut(s)	488, 530, 956, 1246, 1423, 1516, 1630, 1686, 2248
HindIII	AAGCTT	2 cut(s)	2170, 2372
HinfI	GANTC	8 cut(s)	8, 42, 66, 78, 902, 998, 1273, 1534
HpaII	CCGG	2 cut(s)	791, 2166
HphI	GGTGA	3 cut(s)	559, 1739, 2023
Hpy166II	GTNNAC	5 cut(s)	101, 524, 1519, 1706, 1760
Hpy188I	TCNGA	8 cut(s)	41, 285, 340, 370, 456, 1003, 1134, 1533
Hpy8I	GTNNAC	5 cut(s)	101, 524, 1519, 1706, 1760
Hpy99I	CGWCG	1 cut(s)	564
HpyCH4III	ACNGT	7 cut(s)	164, 422, 968, 1547, 1883, 2118, 2296
HpyF10VI	GCNNNNNNNGC	5 cut(s)	59, 121, 385, 953, 1984
Hsp92II	CATG	9 cut(s)	488, 530, 956, 1246, 1423, 1516, 1630, 1686, 2248
KpnI	GGTACC	1 cut(s)	1322
Kzo9I	GATC	6 cut(s)	85, 409, 451, 596, 1080, 1777
LguI	GCTCTTC	1 cut(s)	549
LmnI	GCTCC	3 cut(s)	428, 1975, 2240
Lsp1109I	GCAGC	7 cut(s)	190, 868, 1357, 1479, 1723, 1856, 2079
LweI	GCATC	6 cut(s)	130, 136, 190, 287, 1225, 1849
MaeI	CTAG	8 cut(s)	195, 1497, 1574, 1698, 1790, 1827, 1994, 2084
MaeIII	GTNAC	4 cut(s)	643, 1246, 1612, 2037
MalI	GATC	6 cut(s)	87, 411, 453, 598, 1082, 1779
MboI	GATC	6 cut(s)	85, 409, 451, 596, 1080, 1777
MfeI	CAATTG	1 cut(s)	1183
MflI	RGATCY	2 cut(s)	409, 596
MhlI	GDGCHC	4 cut(s)	103, 1878, 1989, 2059
MlyI	GAGTC	6 cut(s)	17, 51, 87, 896, 1007, 1543
MmeI	TCCRAC	3 cut(s)	989, 1953, 2100
Mph1103I	ATGCAT	2 cut(s)	302, 1218
MroXI	GAANNNNTTC	3 cut(s)	171, 315, 2009
MseI	TTAA	5 cut(s)	1409, 1664, 1742, 2271, 2446
MslI	CAYNNNNRTG	2 cut(s)	889, 957
MspI	CCGG	2 cut(s)	791, 2166
MspR9I	CCNGG	3 cut(s)	256, 792, 865
MunI	CAATTG	1 cut(s)	1183
Mva1269I	GAATGC	1 cut(s)	896
MvaI	CCWGG	2 cut(s)	256, 865
MwoI	GCNNNNNNNGC	5 cut(s)	59, 121, 385, 953, 1984
NciI	CCSGG	1 cut(s)	792
NcoI	CCATGG	2 cut(s)	1242, 1682
NdeI	CATATG	1 cut(s)	2349
NdeII	GATC	6 cut(s)	85, 409, 451, 596, 1080, 1777
NlaIII	CATG	9 cut(s)	488, 530, 956, 1246, 1423, 1516, 1630, 1686, 2248
NlaIV	GGNNCC	7 cut(s)	430, 1320, 1372, 1892, 1987, 2242, 2298
NsiI	ATGCAT	2 cut(s)	302, 1218
NspI	RCATGY	2 cut(s)	956, 1630
NspV	TTCGAA	1 cut(s)	1276
PaeI	GCATGC	1 cut(s)	956
PciI	ACATGT	1 cut(s)	1626
PciSI	GCTCTTC	1 cut(s)	549
PcsI	WCGNNNNNNNCGW	1 cut(s)	1565
PctI	GAATGC	1 cut(s)	896
PdmI	GAANNNNTTC	3 cut(s)	171, 315, 2009
PfeI	GAWTC	2 cut(s)	66, 1273
PfoI	TCCNGGA	1 cut(s)	254
PkrI	GCNGC	8 cut(s)	205, 883, 1347, 1494, 1713, 1864, 1871, 2094
PleI	GAGTC	6 cut(s)	16, 50, 86, 896, 1006, 1542
PpsI	GAGTC	6 cut(s)	16, 50, 86, 896, 1006, 1542
PscI	ACATGT	1 cut(s)	1626
PshBI	ATTAAT	2 cut(s)	1409, 2271
PsiI	TTATAA	2 cut(s)	1383, 2426
Psp6I	CCWGG	2 cut(s)	254, 863
PspEI	GGTNACC	1 cut(s)	1246
PspGI	CCWGG	2 cut(s)	254, 863
PspN4I	GGNNCC	7 cut(s)	430, 1320, 1372, 1892, 1987, 2242, 2298
PspOMI	GGGCCC	1 cut(s)	1985
PspPI	GGNCC	5 cut(s)	1370, 1516, 1890, 1985, 1986
PstI	CTGCAG	3 cut(s)	117, 1713, 1899
PstNI	CAGNNNCTG	1 cut(s)	11
PsuI	RGATCY	2 cut(s)	409, 596
RsaI	GTAC	5 cut(s)	525, 1320, 1691, 2082, 2293
RsaNI	GTAC	5 cut(s)	524, 1319, 1690, 2081, 2292
RseI	CAYNNNNRTG	2 cut(s)	889, 957
SapI	GCTCTTC	1 cut(s)	549
SaqAI	TTAA	5 cut(s)	1409, 1664, 1742, 2271, 2446
SatI	GCNGC	8 cut(s)	204, 882, 1346, 1493, 1712, 1863, 1870, 2093
Sau3AI	GATC	6 cut(s)	85, 409, 451, 596, 1080, 1777
Sau96I	GGNCC	5 cut(s)	1370, 1516, 1890, 1985, 1986
SchI	GAGTC	6 cut(s)	17, 51, 87, 896, 1007, 1543
ScrFI	CCNGG	3 cut(s)	256, 792, 865
SduI	GDGCHC	4 cut(s)	103, 1878, 1989, 2059
SfaNI	GCATC	6 cut(s)	130, 136, 190, 287, 1225, 1849
SfcI	CTRYAG	3 cut(s)	113, 1709, 1895
SfuI	TTCGAA	1 cut(s)	1276
SinI	GGWCC	2 cut(s)	1516, 1890
SmiMI	CAYNNNNRTG	2 cut(s)	889, 957
SmlI	CTYRAG	6 cut(s)	54, 1324, 1522, 2060, 2327, 2375
SmoI	CTYRAG	6 cut(s)	54, 1324, 1522, 2060, 2327, 2375
SphI	GCATGC	1 cut(s)	956
SsiI	CCGC	7 cut(s)	267, 379, 594, 1862, 1920, 1956, 2163
SspMI	CTAG	8 cut(s)	195, 1497, 1574, 1698, 1790, 1827, 1994, 2084
StyD4I	CCNGG	3 cut(s)	254, 790, 863
StyI	CCWWGG	3 cut(s)	1242, 1573, 1682
TaaI	ACNGT	7 cut(s)	164, 422, 968, 1547, 1883, 2118, 2296
TaqI	TCGA	8 cut(s)	30, 309, 657, 1276, 1754, 1835, 2003, 2113
TaqII	GACCGA	2 cut(s)	1878, 2254
TatI	WGTACW	1 cut(s)	523
TauI	GCSGC	1 cut(s)	1865
TfiI	GAWTC	2 cut(s)	66, 1273
Tru1I	TTAA	5 cut(s)	1409, 1664, 1742, 2271, 2446
Tru9I	TTAA	5 cut(s)	1409, 1664, 1742, 2271, 2446
TscAI	CASTG	2 cut(s)	427, 996
TseI	GCWGC	7 cut(s)	203, 881, 1345, 1492, 1711, 1869, 2092
TspDTI	ATGAA	5 cut(s)	295, 774, 831, 912, 951
TspGWI	ACGGA	2 cut(s)	1557, 1598
TspRI	CASTG	2 cut(s)	427, 996
VneI	GTGCAC	1 cut(s)	99
VpaK11BI	GGWCC	2 cut(s)	1516, 1890
VspI	ATTAAT	2 cut(s)	1409, 2271
XapI	RAATTY	2 cut(s)	1744, 2434
XceI	RCATGY	2 cut(s)	956, 1630
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1689
XmaJI	CCTAGG	1 cut(s)	1573
XmiI	GTMKAC	1 cut(s)	1759
XmnI	GAANNNNTTC	3 cut(s)	171, 315, 2009
XspI	CTAG	8 cut(s)	195, 1497, 1574, 1698, 1790, 1827, 1994, 2084
Zsp2I	ATGCAT	2 cut(s)	302, 1218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.