MD07G1029000.v1.1

disease resistance

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Forward (+)
2426445 .. 2430480
4036 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1029000.v1.1.491

Sequence Viewer

Length: 2913 bp
ATGGCCGAGGCGGTAGTTTCAATGGTAATTGAAGGGCTCAAAGGCGCTCTTATTGAGGAAGTGAAGTTCTTGAGTGGGGTTGGCGATCAAATTGAGTATGCACAAATCGAGCTACTTTTGATGCATGGCTTCCTGAAAGATGCTGATGCAAAACAAGGAGACAATGAAGTAGTACGCATTTGGGTTCAAATTATAAGAGATGCTGCTTATGATTTGGAGGATGTCATTGAATCTTTTGCCTTGAAAGTGGCTCTCAAAAGGGGAGGAAGTGGGAAGCTTGTTCTGAAAAGGTTGGCGTGCATCTTTAACAAAGGCATTAATCTTCACAAGATCGGTTCAGAAATTGAGAGCATTACGGTCAAGCTTTCCAAATTGAGGGCGAGTTTGCAAGGTTATAACATCAAGCAAATAACGGGTACACAATATGGAGGTGCCACTTCTTTTGAGAGGCAAAAGGAACAAAGGCAAACGTATCCACATGTTATTGAACGTGATGTTGTTGGGTTAGAGAGCGGTATAGAGATACTAGTCAAGCAGTTGGTGAAAGAAGAAACCCAAGTTGTATCTATTTGGGGGATGGGCGGTTCAGGAAAGACCACTCTTGCAAAACAAGTTTATGATCACAATGTTGTTAAGTGTCATTTCGATTGTTTTGCTTGGGTGTGTGTGTCACAACAATGTCATGGAAAAGAGGTTTTGGAAGATATTTTGATCAAGCTTACTCGCGCCACCAATGATCAAATAAAAGAAATTTCGAAAATGAAGAAGGACCAAATAGTAGAGAGGCTTTGCATCATCCAAAAAAAGAAGAAATGTTTGGTGGTTCTTGATGACATTTGGACTCGTGATGCGTGGAACTCTCTAAAACCTGGATTTCCAATAGGTGAGGAAACGAAGAGTCGTATATTACTCACCACTCGCAACAACGACGTTGCTACACATGCTGGAGAAAATCGTTATGTTTATAAATCGCGTGCGCTAAATACTAAGGAAAGCTGGGAACTGTTTAAGAAGATAGCAATCTTTGGGAGAGATCAAGCAGACTCTGAATCTTATGCTGAGAAGGAGAAACTAGGAAAGAAGATGCTTCAACATTGTGCTGGTCTGCCACTAGCCATTACTGTGATTGCGGAACTTCTAGCAAGAAAAGTCACAGTTGACGAGTGGAATACAGTAGACAAGAACGTTGATGTGCATATACAGAGAGGAACTGATCTTGACCAAGAATACAAAGGCGATCAAGGATATACAGGTGCATTAAGGGTGTTGGCATTGAGTTATGACGACTTACCATATCGTTTAAAACTATGCTTTTTATATTTATGCCAATTTCAAGATGATTATGAGATACCGGTCAAAAGACTGATTCAGTTATGGATAGCAGAAGGTTTTATATCTCCGGCGTCCCAACGACATGGTTCATCCGAAGTATTGGAAAATGTAGCATATTCTTGTTTAAGTGAGTTGGTGCAAAGATGTATGGTTCAAGTTGGAACACTTGGTTCAACTAAGAAGATCAAAACATGCCGTGTTCATGATCTTATGCGAGACTTGTGCTTGTTAAAGGCAGAAGAGGAGAACTTTCTTCACGTTGTAAATTTTACTGACACGATAACCAAGGTAGCAACAATTACTAAAGTTCGAAGACTTGCTGTATATGTGGAAACAGAATTTGTTGATAGATTTGCTCCCACAAGAAATGACCATCTTAGGTCTTTGTTATTCTATGTCGACCCAAAATATGATTACTCCAATTGGAAGAAAAAATTATTGGGGTCAGTACTATTCAACTCCAAATTGCTCAGGGTACTAAAGTTTGAAGGCATAAGGGGAGATGTTGAGTTGCCGAGTAACATTGGGAATCTTGTCCACTTAAGGTTTTTAAGTCTAAAGGGAAGTCATGTAAAACAGTTGCCATCATCTTTAGGTAATTTAGTATGTTTGCAAACTCTAGACTTACGAGGTGTTACCCGGGTGAAAGTACCAAATGTGATTTGGAAGATGAAAGAATTGAGACATTTATATTTATGCCATTTTTACGAAGGGGGTGGGAAATTGTCCTTGGCTACTCTTCACAATTTGCAGACTTTAGTCAATATTTCAGGTGCTGATTGTGATTTGAATCATCTTGCTGAATTGACCAATCTCAGAAAACTGTTCATACATGGGGTGAAAAATATGGAGGAAATCTTGAAATCTACTAGCATCACATTTAACCATCTTCGATCTCTATTTGTGCACTCTGGTCTCGAACTTCTACCAATGAATATGGCATTGAGTTGTCCTCATATATACAAACTTAAATTGGACGGGGCAATCAGAGATCAATCATTGGAAGGCCTTCAGTACTATCGGAACCTCACTAAGATGTCTCTGTCTCGTACTCTTCTACGGTTGGACAGTCTCAAAATACTTGAGAAGATCCCAAACTTAAGAATGCTTTGGTTTGGTTTTGGTACTTTCGAGAATCTTCCAGAACTGGTTTTCTCAGAAGAAGGTTATCCTAATCTTGAATTTCTTTCACTTTCTGGGATGGCTGAATTTAAGACTTGTAGCATAGAGAAAGGAGGCATGCGTAGTCTCTGCAGTTTGTCTATTGACTATTGCTGGGAATTGACGGCAGTCCCTGAGGGGCTTCAGTATGTTACTACCCTCAAGGAATTAACAATCCAAAAGATGCCTGGGACATTCTGTAGTAGGCTTCGGGAAGGAGGAGAGGATTCCTACAAAATTCAACATGTGCCTTCTGTTGTCATTACAAATATTGAGGAGGATAGAGAAGTGGATAACTGTGGGGCAAAGCTGGCGAATGCTGCTGGGACGGCAAGGCCAATATCGCAATATTCATGGCAAACGAGAAGCAAGAAAGGGAAGCAGTGTCGGAACTCGGAAGCTGTAAGCCTTGGTGATTAG

Protein Analysis

971

Amino Acids

109.81

Weight (kDa)

8.6

Isoelectric Point (pI)

41.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 5 - 88 3.1e-22 Rx N-terminal domain
NB-ARC PF00931 172 - 341 5e-42 NB-ARC domain
WHD_DRP PF23559 444 - 519 8e-18 Disease resistance protein Winged helix domain
LRR_14 PF23598 597 - 890 2.7e-30 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000069)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G50180 AT1G53350 AT1G58390 AT1G58390 AT1G58400 AT1G58400 AT1G58400 AT1G58410 AT1G58410 AT1G58410 AT1G58410 AT1G58602 AT1G58602 AT1G58807 AT1G58807 AT1G58848 AT1G58848 AT1G59124 AT1G59124 AT1G59218 AT1G59218 AT1G59218 AT1G59620 AT1G59780 AT1G59780 AT5G35450 AT5G35450 AT5G43470 AT5G43470 AT5G43470 AT5G43470 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620
fragaria_vesca FvH4_4g04072 FvH4_4g22931 FvH4_4g22931 FvH4_4g22940 FvH4_6g49940 FvH4_6g49940 FvH4_7g08100 FvH4_7g08870 FvH4_7g08870 FvH4_7g09280 FvH4_7g09290 FvH4_7g15190 FvH4_7g15200 FvH4_7g15240 FvH4_7g15240 FvH4_7g33440
malus_domestica MD00G1174600.v1.1 MD01G1113700.v1.1 MD03G1071300.v1.1 MD04G1041500.v1.1 MD04G1238000.v1.1 MD07G1029000.v1.1 MD07G1092100.v1.1 MD07G1092300.v1.1 MD07G1092600.v1.1 MD12G1256300.v1.1 MD13G1128200.v1.1 MD13G1128400.v1.1 MD17G1268000.v1.1
prunus_persica Prupe.1G041300_v2.0.a1 Prupe.1G041300_v2.0.a1 Prupe.1G042900_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043600_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G046700_v2.0.a1 Prupe.1G047700_v2.0.a1 Prupe.1G047900_v2.0.a1 Prupe.1G048000_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G049900_v2.0.a1 Prupe.1G051500_v2.0.a1 Prupe.1G051800_v2.0.a1 Prupe.1G051900_v2.0.a1 Prupe.1G052200_v2.0.a1 Prupe.1G194900_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117300_v2.0.a1 Prupe.2G117400_v2.0.a1 Prupe.2G117500_v2.0.a1 Prupe.2G117700_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G119900_v2.0.a1
pyrus_communis pycom03g05750 pycom04g21110 pycom07g07530 pycom07g07590 pycom13g11110 pycom13g11140 pycom13g11160 pycom13g11170 pycom17g26680
rosa_chinensis RchiOBHm_Chr1g0341231 RchiOBHm_Chr1g0344091 RchiOBHm_Chr1g0344161 RchiOBHm_Chr1g0345001 RchiOBHm_Chr1g0345351 RchiOBHm_Chr1g0345371 RchiOBHm_Chr1g0345391 RchiOBHm_Chr1g0345531 RchiOBHm_Chr1g0345551 RchiOBHm_Chr1g0345571 RchiOBHm_Chr1g0345581 RchiOBHm_Chr1g0345661 RchiOBHm_Chr1g0345691 RchiOBHm_Chr1g0345761 RchiOBHm_Chr1g0345791 RchiOBHm_Chr1g0345821 RchiOBHm_Chr1g0345911 RchiOBHm_Chr1g0345941 RchiOBHm_Chr1g0357611 RchiOBHm_Chr1g0357911 RchiOBHm_Chr1g0357921 RchiOBHm_Chr1g0357931 RchiOBHm_Chr1g0357971 RchiOBHm_Chr1g0358121 RchiOBHm_Chr1g0383491 RchiOBHm_Chr1g0383511 RchiOBHm_Chr1g0383521 RchiOBHm_Chr3g0480581 RchiOBHm_Chr4g0394341 RchiOBHm_Chr4g0394361 RchiOBHm_Chr4g0394411 RchiOBHm_Chr4g0394441 RchiOBHm_Chr4g0407681 RchiOBHm_Chr4g0429191 RchiOBHm_Chr4g0429201 RchiOBHm_Chr4g0429211 RchiOBHm_Chr4g0429221 RchiOBHm_Chr6g0265091
rosa_laevigata RLG00000007088 RLG00000008700 RLG00000009190 RLG00000009702 RLG00000014210 RLG00000028829 RLG00000028833 RLG00000028837 RLG00000028838 RLG00000028921 RLG00000028926
rosa_multiflora Rmu_co8366955.1_g000001 Rmu_co8394205.1_g000001 Rmu_sc0000019.1_g000001 Rmu_sc0000054.1_g000031 Rmu_sc0000054.1_g000033 Rmu_sc0000200.1_g000002 Rmu_sc0000200.1_g000007 Rmu_sc0000200.1_g000018 Rmu_sc0000200.1_g000020 Rmu_sc0000200.1_g000021 Rmu_sc0000251.1_g000012 Rmu_sc0000251.1_g000015 Rmu_sc0000251.1_g000028 Rmu_sc0000253.1_g000015 Rmu_sc0000255.1_g000045 Rmu_sc0000255.1_g000046 Rmu_sc0001292.1_g000013 Rmu_sc0001292.1_g000018 Rmu_sc0001292.1_g000028 Rmu_sc0001292.1_g000029 Rmu_sc0001349.1_g000006 Rmu_sc0001349.1_g000014 Rmu_sc0001582.1_g000006 Rmu_sc0001582.1_g000018 Rmu_sc0001582.1_g000020 Rmu_sc0001692.1_g000007 Rmu_sc0001692.1_g000024 Rmu_sc0001692.1_g000026 Rmu_sc0001692.1_g000029 Rmu_sc0001692.1_g000030 Rmu_sc0001835.1_g000006 Rmu_sc0001835.1_g000010 Rmu_sc0002071.1_g000005 Rmu_sc0002276.1_g000002 Rmu_sc0002276.1_g000009 Rmu_sc0002329.1_g000018 Rmu_sc0002329.1_g000023 Rmu_sc0002329.1_g000025 Rmu_sc0002523.1_g000005 Rmu_sc0003573.1_g000005 Rmu_sc0003573.1_g000006 Rmu_sc0004099.1_g000021 Rmu_sc0005812.1_g000009 Rmu_sc0006271.1_g000002 Rmu_sc0006287.1_g000038 Rmu_sc0006439.1_g000008 Rmu_sc0007456.1_g000004 Rmu_sc0007581.1_g000009 Rmu_sc0007849.1_g000014 Rmu_sc0008115.1_g000012 Rmu_sc0010521.1_g000004 Rmu_sc0012471.1_g000017 Rmu_sc0014762.1_g000001 Rmu_sc0015150.1_g000003 Rmu_sc0017221.1_g000001 Rmu_sc0017299.1_g000001 Rmu_sc0017299.1_g000002 Rmu_sc0021457.1_g000001 Rmu_sc0022067.1_g000001 Rmu_sc0033275.1_g000001 Rmu_ssc0000245.1_g000012 Rmu_ssc0000359.1_g000035 Rmu_ssc0000359.1_g000067 Rmu_ssc0000359.1_g000072 Rmu_ssc0000434.1_g000005 Rmu_ssc0000434.1_g000007
rosa_roxburghii Rroxscaffold_4G00298420 Rroxscaffold_4G00298720 Rroxscaffold_4G00308990 Rroxscaffold_4G00309000 Rroxscaffold_4G00309010 Rroxscaffold_4G00309050 Rroxscaffold_4G00309070 Rroxscaffold_4G00309100 Rroxscaffold_4G00310030 Rroxscaffold_4G00310050 Rroxscaffold_4G00311880 Rroxscaffold_5G00339420 Rroxscaffold_5G00339450 Rroxscaffold_5G00344880 Rroxscaffold_5G00352270 Rroxscaffold_5G00362240 Rroxscaffold_5G00370840 Rroxscaffold_7G00202970
rosa_rugosa Rorug01G0159100.1 Rorug01G0159200.1 Rorug01G0171700 Rorug01G0171900 Rorug01G0172000 Rorug01G0191700 Rorug01G0191800 Rorug01G0256900 Rorug01G0257000 Rorug01G0257100 Rorug03G0198000 Rorug03G0366300.1 Rorug03G0366400.1 Rorug03G0366500.1 Rorug04G0081200 Rorug04G0081200 Rorug04G0081200 Rorug04G0233700 Rorug04G0233800 Rorug04G0233800 Rorug06G0013300
rosa_samantha Rh1CG138800 Rh1CG161300 Rh1CG173800 Rh1CG179800 Rh1CG180100 Rh1CG180500 Rh1CG180800 Rh1CG180900 Rh1CG194100 Rh1DG205100 Rh3AG236300 Rh4AG052000 Rh4AG052100 Rh4AG145900 Rh4AG289700 Rh4AG289800 Rh6AG136800 Rh6AG137300 Rh6BG133600 Rh6CG132000 Rh6CG134000 Rh6DG119300
rosa_wichuraiana Rw0G003420 Rw1G015500 Rw1G016110 Rw1G016180 Rw1G016210 Rw1G016230 Rw1G016280 Rw1G016440 Rw1G016450 Rw1G016460 Rw1G016480 Rw1G017490 Rw1G024140 Rw1G024160 Rw3G022530 Rw4G004140 Rw4G004190 Rw4G011850 Rw6G011800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 194, 396, 966
AccB1I GGYRCC 1 cut(s) 431
AccBSI CCGCTC 1 cut(s) 513
AccI GTMKAC 2 cut(s) 1176, 1731
AccII CGCG 2 cut(s) 726, 973
AciI CCGC 4 cut(s) 11, 513, 582, 1130
AclI AACGTT 1 cut(s) 1185
AclWI GGATC 1 cut(s) 2416
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 6 cut(s) 750, 1597, 1670, 2513, 2540, 2730
AcuI CTGAAG 2 cut(s) 2327, 2621
AcyI GRCGYC 1 cut(s) 1403
AfaI GTAC 8 cut(s) 174, 418, 1782, 1809, 1983, 2348, 2383, 2458
AfiI CCNNNNNNNGG 1 cut(s) 375
AflII CTTAAG 2 cut(s) 1873, 2431
AflIII ACRYGT 2 cut(s) 478, 2737
AgeI ACCGGT 1 cut(s) 1351
AhlI ACTAGT 1 cut(s) 526
AjnI CCWGG 2 cut(s) 868, 2680
AjuI GAANNNNNNNTTGG 6 cut(s) 800, 832, 1754, 1786, 2045, 2077
AloI GAACNNNNNNTCC 4 cut(s) 50, 82, 568, 600
AluBI AGCT 7 cut(s) 112, 277, 364, 718, 996, 2803, 2894
AluI AGCT 7 cut(s) 112, 277, 364, 718, 996, 2803, 2894
Alw21I GWGCWC 1 cut(s) 2241
Alw26I GTCTC 8 cut(s) 153, 1542, 2008, 2252, 2376, 2382, 2408, 2585
Alw44I GTGCAC 1 cut(s) 2237
AlwI GGATC 1 cut(s) 2416
AlwNI CAGNNNCTG 3 cut(s) 1046, 2108, 2627
Ama87I CYCGRG 1 cut(s) 1971
AoxI GGCC 3 cut(s) 3, 2338, 2828
ApaLI GTGCAC 1 cut(s) 2237
ApeKI GCWGC 2 cut(s) 203, 2813
ApoI RAATTY 6 cut(s) 750, 1597, 1670, 2513, 2540, 2730
AseI ATTAAT 1 cut(s) 318
AsiGI ACCGGT 1 cut(s) 1351
Asp700I GAANNNNTTC 1 cut(s) 2340
AspLEI GCGC 3 cut(s) 47, 728, 979
AspS9I GGNCC 1 cut(s) 769
AsuC2I CCSGG 2 cut(s) 1972, 1973
AsuHPI GGTGA 5 cut(s) 553, 896, 904, 1987, 2182
AsuII TTCGAA 2 cut(s) 755, 1642
AvaI CYCGRG 1 cut(s) 1971
AvaII GGWCC 1 cut(s) 769
AxyI CCTNAGG 1 cut(s) 2628
BaeGI GKGCMC 1 cut(s) 2241
BaeI ACNNNNGTAYC 2 cut(s) 1799, 1832
BanI GGYRCC 1 cut(s) 431
BanII GRGCYC 1 cut(s) 39
BauI CACGAG 1 cut(s) 843
BbsI GAAGAC 1 cut(s) 1651
Bbv12I GWGCWC 1 cut(s) 2241
BbvI GCAGC 2 cut(s) 190, 2800
BccI CCATC 5 cut(s) 571, 1713, 1924, 2226, 2527
BceAI ACGGC 3 cut(s) 1512, 2634, 2838
BcgI CGANNNNNNTGC 4 cut(s) 635, 669, 1536, 1570
BciT130I CCWGG 2 cut(s) 870, 2682
BciVI GTATCC 1 cut(s) 483
BclI TGATCA 3 cut(s) 619, 711, 736
BcnI CCSGG 2 cut(s) 1972, 1973
BcoDI GTCTC 8 cut(s) 153, 1542, 2008, 2252, 2376, 2382, 2408, 2585
BcuI ACTAGT 1 cut(s) 526
BfaI CTAG 6 cut(s) 527, 1073, 1112, 1139, 1952, 2202
BfmI CTRYAG 2 cut(s) 2584, 2692
BfoI RGCGCY 1 cut(s) 48
BfrI CTTAAG 2 cut(s) 1873, 2431
BfuI GTATCC 1 cut(s) 483
BisI GCNGC 2 cut(s) 204, 2814
BlsI GCNGC 2 cut(s) 205, 2815
BmcAI AGTACT 2 cut(s) 1782, 2348
Bme1390I CCNGG 4 cut(s) 870, 1972, 1973, 2682
Bme18I GGWCC 1 cut(s) 769
BmeT110I CYCGRG 1 cut(s) 1971
BmgT120I GGNCC 1 cut(s) 769
BmiI GGNNCC 2 cut(s) 433, 2357
BmrFI CCNGG 4 cut(s) 870, 1972, 1973, 2682
BoxI GACNNNNGTC 2 cut(s) 2090, 2621
BpiI GAAGAC 1 cut(s) 1651
BplI GAGNNNNNCTC 2 cut(s) 2269, 2301
BpmI CTGGAG 1 cut(s) 966
Bpu10I CCTNAGC 1 cut(s) 1802
Bpu14I TTCGAA 2 cut(s) 755, 1642
BpuEI CTTGAG 3 cut(s) 91, 2435, 2639
BpuMI CCSGG 2 cut(s) 1972, 1973
BsaBI GATNNNNATC 2 cut(s) 1019, 2121
BsaHI GRCGYC 1 cut(s) 1403
BsaI GGTCTC 1 cut(s) 2252
BsaJI CCNNGG 6 cut(s) 6, 1617, 1971, 2061, 2681, 2902
BsaWI WCCGGW 1 cut(s) 1351
Bsc4I CCNNNNNNNGG 1 cut(s) 375
Bse118I RCCGGY 1 cut(s) 1351
Bse1I ACTGG 1 cut(s) 2484
Bse21I CCTNAGG 1 cut(s) 2628
Bse8I GATNNNNATC 2 cut(s) 1019, 2121
BseBI CCWGG 2 cut(s) 870, 2682
BseDI CCNNGG 6 cut(s) 6, 1617, 1971, 2061, 2681, 2902
BseGI GGATG 5 cut(s) 226, 582, 795, 1421, 2538
BseJI GATNNNNATC 2 cut(s) 1019, 2121
BseLI CCNNNNNNNGG 1 cut(s) 375
BseMII CTCAG 5 cut(s) 1050, 1816, 2161, 2502, 2619
BseNI ACTGG 1 cut(s) 2484
BseRI GAGGAG 3 cut(s) 1589, 2727, 2783
BseSI GKGCMC 1 cut(s) 2241
BseXI GCAGC 2 cut(s) 190, 2800
BseYI CCCAGC 3 cut(s) 996, 2607, 2816
Bsh1236I CGCG 2 cut(s) 726, 973
BshFI GGCC 3 cut(s) 5, 2340, 2830
BshNI GGYRCC 1 cut(s) 431
BshTI ACCGGT 1 cut(s) 1351
BsiHKAI GWGCWC 1 cut(s) 2241
BsiHKCI CYCGRG 1 cut(s) 1971
BsiSI CCGG 3 cut(s) 1352, 1400, 1972
BslFI GGGAC 4 cut(s) 1390, 2609, 2698, 2833
BslI CCNNNNNNNGG 1 cut(s) 375
BsmAI GTCTC 8 cut(s) 153, 1542, 2008, 2252, 2376, 2382, 2408, 2585
BsmFI GGGAC 4 cut(s) 1390, 2609, 2698, 2833
BsmI GAATGC 2 cut(s) 2442, 2815
BsnI GGCC 3 cut(s) 5, 2340, 2830
Bso31I GGTCTC 1 cut(s) 2252
BsoBI CYCGRG 1 cut(s) 1971
Bsp119I TTCGAA 2 cut(s) 755, 1642
Bsp1286I GDGCHC 2 cut(s) 39, 2241
BspACI CCGC 4 cut(s) 11, 513, 582, 1130
BspANI GGCC 3 cut(s) 5, 2340, 2830
BspCNI CTCAG 5 cut(s) 1051, 1815, 2160, 2501, 2620
BspFNI CGCG 2 cut(s) 726, 973
BspHI TCATGA 1 cut(s) 1534
BspLI GGNNCC 2 cut(s) 433, 2357
BspMAI CTGCAG 1 cut(s) 2588
BspPI GGATC 1 cut(s) 2416
BspT104I TTCGAA 2 cut(s) 755, 1642
BspT107I GGYRCC 1 cut(s) 431
BspTI CTTAAG 2 cut(s) 1873, 2431
BspTNI GGTCTC 1 cut(s) 2252
BsrBI CCGCTC 1 cut(s) 513
BsrFI RCCGGY 1 cut(s) 1351
BsrI ACTGG 1 cut(s) 2484
BssAI RCCGGY 1 cut(s) 1351
BssECI CCNNGG 6 cut(s) 6, 1617, 1971, 2061, 2681, 2902
BssNI GRCGYC 1 cut(s) 1403
BssSI CACGAG 1 cut(s) 843
BssT1I CCWWGG 3 cut(s) 1617, 2061, 2902
Bst2BI CACGAG 1 cut(s) 843
Bst2UI CCWGG 2 cut(s) 870, 2682
Bst6I CTCTTC 4 cut(s) 890, 1566, 2076, 2391
BstACI GRCGYC 1 cut(s) 1403
BstAFI CTTAAG 2 cut(s) 1873, 2431
BstBI TTCGAA 2 cut(s) 755, 1642
BstC8I GCNNGC 4 cut(s) 298, 975, 2573, 2805
BstDEI CTNAG 9 cut(s) 987, 1059, 1509, 1709, 1802, 2147, 2364, 2488, 2628
BstF5I GGATG 5 cut(s) 226, 582, 795, 1421, 2538
BstFNI CGCG 2 cut(s) 726, 973
BstH2I RGCGCY 1 cut(s) 48
BstHHI GCGC 3 cut(s) 47, 728, 979
BstMAI GTCTC 8 cut(s) 153, 1542, 2008, 2252, 2376, 2382, 2408, 2585
BstMWI GCNNNNNNNGC 5 cut(s) 941, 2804, 2813, 2822, 2836
BstNI CCWGG 2 cut(s) 870, 2682
BstNSI RCATGY 5 cut(s) 482, 944, 1527, 2575, 2741
BstPAI GACNNNNGTC 2 cut(s) 2090, 2621
BstSCI CCNGG 4 cut(s) 868, 1970, 1971, 2680
BstSFI CTRYAG 2 cut(s) 2584, 2692
BstSLI GKGCMC 1 cut(s) 2241
BstUI CGCG 2 cut(s) 726, 973
BstV1I GCAGC 2 cut(s) 190, 2800
BstV2I GAAGAC 1 cut(s) 1651
BstX2I RGATCY 1 cut(s) 2421
BstXI CCANNNNNNTGG 1 cut(s) 1415
BstYI RGATCY 1 cut(s) 2421
Bsu36I CCTNAGG 1 cut(s) 2628
BsuI GTATCC 1 cut(s) 483
BsuRI GGCC 3 cut(s) 5, 2340, 2830
BtsCI GGATG 5 cut(s) 226, 582, 795, 1421, 2538
BtsI GCAGTG 1 cut(s) 2882
BtsIMutI CAGTG 1 cut(s) 2882
Cac8I GCNNGC 4 cut(s) 298, 975, 2573, 2805
CaiI CAGNNNCTG 3 cut(s) 1046, 2108, 2627
CciI TCATGA 1 cut(s) 1534
CfoI GCGC 3 cut(s) 47, 728, 979
Cfr10I RCCGGY 1 cut(s) 1351
Cfr13I GGNCC 1 cut(s) 769
Cfr9I CCCGGG 1 cut(s) 1971
CseI GACGC 1 cut(s) 1392
Csp6I GTAC 8 cut(s) 173, 417, 1781, 1808, 1982, 2347, 2382, 2457
CspAI ACCGGT 1 cut(s) 1351
CspCI CAANNNNNGTGG 2 cut(s) 424, 459
CviQI GTAC 8 cut(s) 173, 417, 1781, 1808, 1982, 2347, 2382, 2457
DdeI CTNAG 9 cut(s) 987, 1059, 1509, 1709, 1802, 2147, 2364, 2488, 2628
DraI TTTAAA 1 cut(s) 1302
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 4 cut(s) 890, 1566, 2076, 2391
EarI CTCTTC 4 cut(s) 890, 1566, 2076, 2391
Eco130I CCWWGG 3 cut(s) 1617, 2061, 2902
Eco147I AGGCCT 1 cut(s) 2340
Eco24I GRGCYC 1 cut(s) 39
Eco31I GGTCTC 1 cut(s) 2252
Eco47I GGWCC 1 cut(s) 769
Eco57I CTGAAG 2 cut(s) 2327, 2621
Eco81I CCTNAGG 1 cut(s) 2628
Eco88I CYCGRG 1 cut(s) 1971
EcoRII CCWGG 2 cut(s) 868, 2680
EcoT14I CCWWGG 3 cut(s) 1617, 2061, 2902
EcoT22I ATGCAT 1 cut(s) 126
EcoT38I GRGCYC 1 cut(s) 39
ErhI CCWWGG 3 cut(s) 1617, 2061, 2902
FalI AAGNNNNNCTT 2 cut(s) 33, 65
FaqI GGGAC 4 cut(s) 1390, 2609, 2698, 2833
FbaI TGATCA 3 cut(s) 619, 711, 736
FblI GTMKAC 2 cut(s) 1176, 1731
Fnu4HI GCNGC 2 cut(s) 204, 2814
FokI GGATG 5 cut(s) 233, 589, 782, 1408, 2545
FriOI GRGCYC 1 cut(s) 39
Fsp4HI GCNGC 2 cut(s) 204, 2814
FspBI CTAG 6 cut(s) 527, 1073, 1112, 1139, 1952, 2202
GlaI GCGC 3 cut(s) 46, 727, 978
GluI GCNGC 2 cut(s) 204, 2814
GsaI CCCAGC 3 cut(s) 1000, 2611, 2820
GsuI CTGGAG 1 cut(s) 966
HaeII RGCGCY 1 cut(s) 48
HaeIII GGCC 3 cut(s) 5, 2340, 2830
HapII CCGG 3 cut(s) 1352, 1400, 1972
HgaI GACGC 1 cut(s) 1392
HhaI GCGC 3 cut(s) 47, 728, 979
Hin1I GRCGYC 1 cut(s) 1403
Hin6I GCGC 3 cut(s) 45, 726, 977
HinP1I GCGC 3 cut(s) 45, 726, 977
HincII GTYRAC 2 cut(s) 1159, 1732
HindII GTYRAC 2 cut(s) 1159, 1732
HindIII AAGCTT 3 cut(s) 275, 362, 716
HpaII CCGG 3 cut(s) 1352, 1400, 1972
HphI GGTGA 5 cut(s) 553, 896, 904, 1987, 2182
Hpy166II GTNNAC 6 cut(s) 419, 1159, 1177, 1732, 1870, 2239
Hpy8I GTNNAC 6 cut(s) 419, 1159, 1177, 1732, 1870, 2239
Hpy99I CGWCG 1 cut(s) 932
HpyCH4IV ACGT 5 cut(s) 470, 490, 930, 1185, 1590
HpyF10VI GCNNNNNNNGC 5 cut(s) 941, 2804, 2813, 2822, 2836
HpyF3I CTNAG 9 cut(s) 987, 1059, 1509, 1709, 1802, 2147, 2364, 2488, 2628
HpySE526I ACGT 5 cut(s) 470, 490, 930, 1185, 1590
Hsp92I GRCGYC 1 cut(s) 1403
HspAI GCGC 3 cut(s) 45, 726, 977
Ksp22I TGATCA 3 cut(s) 619, 711, 736
LmnI GCTCC 1 cut(s) 1693
Lsp1109I GCAGC 2 cut(s) 190, 2800
MaeI CTAG 6 cut(s) 527, 1073, 1112, 1139, 1952, 2202
MaeII ACGT 5 cut(s) 470, 490, 930, 1185, 1590
MaeIII GTNAC 5 cut(s) 669, 1150, 1850, 1966, 2644
MbiI CCGCTC 1 cut(s) 513
MfeI CAATTG 1 cut(s) 1753
MflI RGATCY 1 cut(s) 2421
MhlI GDGCHC 2 cut(s) 39, 2241
MlyI GAGTC 3 cut(s) 835, 907, 1037
MmeI TCCRAC 3 cut(s) 1471, 2376, 2861
Mph1103I ATGCAT 1 cut(s) 126
MroXI GAANNNNTTC 1 cut(s) 2340
MslI CAYNNNNRTG 3 cut(s) 676, 1121, 2366
MspCI CTTAAG 2 cut(s) 1873, 2431
MspI CCGG 3 cut(s) 1352, 1400, 1972
MspR9I CCNGG 4 cut(s) 870, 1972, 1973, 2682
MunI CAATTG 1 cut(s) 1753
Mva1269I GAATGC 2 cut(s) 2442, 2815
MvaI CCWGG 2 cut(s) 870, 2682
MvnI CGCG 2 cut(s) 726, 973
MwoI GCNNNNNNNGC 5 cut(s) 941, 2804, 2813, 2822, 2836
NciI CCSGG 2 cut(s) 1972, 1973
NlaIV GGNNCC 2 cut(s) 433, 2357
NmeAIII GCCGAG 2 cut(s) 31, 1872
NmuCI GTSAC 2 cut(s) 669, 1150
NsiI ATGCAT 1 cut(s) 126
NspI RCATGY 5 cut(s) 482, 944, 1527, 2575, 2741
NspV TTCGAA 2 cut(s) 755, 1642
PaeI GCATGC 1 cut(s) 2575
PagI TCATGA 1 cut(s) 1534
PceI AGGCCT 1 cut(s) 2340
PciI ACATGT 2 cut(s) 478, 2737
PctI GAATGC 2 cut(s) 2442, 2815
PdmI GAANNNNTTC 1 cut(s) 2340
PfeI GAWTC 7 cut(s) 230, 1049, 1366, 1861, 2122, 2467, 2720
PinAI ACCGGT 1 cut(s) 1351
PkrI GCNGC 2 cut(s) 205, 2815
PleI GAGTC 3 cut(s) 835, 906, 1037
PpsI GAGTC 3 cut(s) 835, 906, 1037
PscI ACATGT 2 cut(s) 478, 2737
PshAI GACNNNNGTC 2 cut(s) 2090, 2621
PshBI ATTAAT 1 cut(s) 318
PsiI TTATAA 3 cut(s) 194, 396, 966
Psp1406I AACGTT 1 cut(s) 1185
Psp6I CCWGG 2 cut(s) 868, 2680
PspFI CCCAGC 3 cut(s) 996, 2607, 2816
PspGI CCWGG 2 cut(s) 868, 2680
PspN4I GGNNCC 2 cut(s) 433, 2357
PspPI GGNCC 1 cut(s) 769
PstI CTGCAG 1 cut(s) 2588
PstNI CAGNNNCTG 3 cut(s) 1046, 2108, 2627
PsuI RGATCY 1 cut(s) 2421
RsaI GTAC 8 cut(s) 174, 418, 1782, 1809, 1983, 2348, 2383, 2458
RsaNI GTAC 8 cut(s) 173, 417, 1781, 1808, 1982, 2347, 2382, 2457
RseI CAYNNNNRTG 3 cut(s) 676, 1121, 2366
SalI GTCGAC 1 cut(s) 1730
SatI GCNGC 2 cut(s) 204, 2814
Sau96I GGNCC 1 cut(s) 769
ScaI AGTACT 2 cut(s) 1782, 2348
SchI GAGTC 3 cut(s) 835, 907, 1037
ScrFI CCNGG 4 cut(s) 870, 1972, 1973, 2682
SduI GDGCHC 2 cut(s) 39, 2241
SfcI CTRYAG 2 cut(s) 2584, 2692
SfuI TTCGAA 2 cut(s) 755, 1642
SinI GGWCC 1 cut(s) 769
SmaI CCCGGG 1 cut(s) 1973
SmiMI CAYNNNNRTG 3 cut(s) 676, 1121, 2366
SmlI CTYRAG 5 cut(s) 70, 1873, 2414, 2431, 2654
SmoI CTYRAG 5 cut(s) 70, 1873, 2414, 2431, 2654
SpeI ACTAGT 1 cut(s) 526
SphI GCATGC 1 cut(s) 2575
SseBI AGGCCT 1 cut(s) 2340
SsiI CCGC 4 cut(s) 11, 513, 582, 1130
SspI AATATT 3 cut(s) 2098, 2764, 2843
SspMI CTAG 6 cut(s) 527, 1073, 1112, 1139, 1952, 2202
StuI AGGCCT 1 cut(s) 2340
StyD4I CCNGG 4 cut(s) 868, 1970, 1971, 2680
StyI CCWWGG 3 cut(s) 1617, 2061, 2902
TaiI ACGT 5 cut(s) 473, 493, 933, 1188, 1593
TaqI TCGA 8 cut(s) 108, 645, 755, 1642, 1731, 2224, 2250, 2463
TatI WGTACW 2 cut(s) 1780, 2346
TfiI GAWTC 7 cut(s) 230, 1049, 1366, 1861, 2122, 2467, 2720
TscAI CASTG 1 cut(s) 2882
TseFI GTSAC 2 cut(s) 669, 1150
TseI GCWGC 2 cut(s) 203, 2813
Tsp45I GTSAC 2 cut(s) 669, 1150
TspDTI ATGAA 8 cut(s) 180, 776, 1410, 1523, 2018, 2149, 2279, 2835
TspMI CCCGGG 1 cut(s) 1971
TspRI CASTG 1 cut(s) 2882
Vha464I CTTAAG 2 cut(s) 1873, 2431
VneI GTGCAC 1 cut(s) 2237
VpaK11BI GGWCC 1 cut(s) 769
VspI ATTAAT 1 cut(s) 318
XapI RAATTY 6 cut(s) 750, 1597, 1670, 2513, 2540, 2730
XbaI TCTAGA 1 cut(s) 1951
XceI RCATGY 5 cut(s) 482, 944, 1527, 2575, 2741
XcmI CCANNNNNNNNNTGG 2 cut(s) 1992, 2678
XmaI CCCGGG 1 cut(s) 1971
XmiI GTMKAC 2 cut(s) 1176, 1731
XmnI GAANNNNTTC 1 cut(s) 2340
XspI CTAG 6 cut(s) 527, 1073, 1112, 1139, 1952, 2202
ZrmI AGTACT 2 cut(s) 1782, 2348
Zsp2I ATGCAT 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.