Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000251.1

Orthogroup ID

OG0000069

Physical Location & Seq

Genomic Coordinates Forward (+)

77228 .. 82903

Gene Structure 5676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000251.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3321 bp

ctgaaggcgtacgttgttgcagttgtggctgaagggatcaagccccttggagagttcatcattcagcaagcgaaattcttgagtggactcagcaatcaaattgagcatgcgcagaacgagctacacttgatccggggatttctaaaagacgcagatacgaagcaaaaagatgaagaactagtacacatttgtgttgaacttatcagagatgctgcttatgacttggaggatgtcattgaatctttttacttgaaagtggcttccaggaggagaggaggtactgtgaagattgttctcaaaaggtttgcctgcatctttaatgaaggactgaatcgatacgagattgggtccgaaattgaggatattatgaccaaactttctcatctgaggtcgaatttgcagagttataacataagacaaataagtgggggtgaaagtgtggcttcagcttttaagaggcaaccagataggaggcgaacttacgctcatgaagttgaaagtcatattgttgggttggaggaaattacgggaacactggtgaaaaagttggtgagagaaggaaagcgtcatctagttgtttctattagggggatgggcggctccggaaaaaccactcttgcaaaacaggaaagagatgaaatagcagaggaggtctgtagtatccaacgagaaaagagatgtttagtggtccttgatgacatatggactcaagaggcttggaattcgataaaagctggattcccaatcaatgaggaaacagagagccggatattacacactactcgcaagaaagaagtagccttgcttgcatccagaaatgatcatctccaccaacctcagcaactagatgacaaccagtgctgggaactgtttgaaaagatagccagatgtggaagcgacaaaacagacttggaagtttatgatgcaaagaagagagaattaggaaagaagatgctagttcattgttcaggtttgccattagccataagtgtgcttgctggtcttctaagtagacgagagaaagttgaggagtgggaaacagtacttacaaatgttgataaatacataatgagaggtacaaatgtccttgaaagagaaaacacaggtcaagggtatggtgtatcgagtgtcttggcattgagttatgatgatttaccatctaacttaaaactctgctttctatacttggcccaatttcctgaggatcatgagatacaggtaacaagattgactcaattatggattgcagaagggtttatagcttcaacatcagaaatacagggttcagtggaaataatggaagatgtatcatatggctgcctaactgaactggtggaaagatctatgattcaagttgtaaaagctggtttaagtgggaaggtgaaaacttgccgcctccatgatcttatgcgtgacttgtgcttgcaaaaggcaaaagaggagaactttctcggtgttgttaacttttctgttcgtccggtgtctaatgcaacagtgattggtaaggttcgaagacttgccctctatttggacgaagatgttaaatatgagttcagaagtgagaatggaagagatggccacattaggtctctattatactttgccccagaagatttctaccaaaagtggaacaaaagaataatacgatcagtattcaatgacttcaaattgcttagagtcttgaagtttgaaaatatagataaagtttttaagttaccaaagacaattgggaatctagtccacctgaggtttctgagtctgaaggatagtaaatgtcgtgccttgccatcatctgtatctaatctggtactcttgcaaactctagatctgcggggtgtatgtataggtaccaaaatcagaaatgtgttttggaatttggagcaactgaggcatttgtatttaccttgttgttacagtgttagtggaaaactgtcctttgcaaggctgtgcaatttgcagacgttggtcaatgttagaattgagaaacgtgatttgaatggtcttgttcaattaagcaatttgaagaaactaagcataatagcattagagtctagtgagttggaaaagctgaaggacatgttgatatcaaggaatagaacatataaacatcttcggtctctatctctggaggtaatcggatctggtgatggggatattataccaagtgatatagtattaaggtgtcctcatgtatacaggctgcgactggaggggaaaatgacagcgttaccgaaagagctcccaaacctcgccaagataacgctgatagcaacaagactgaagggtgaccagattgaaatactggagaagctgcccaacttaagggtgctttacctcgactggcgttctttcgaatcagaaacaatggttttctcccaaggaggctttcctcatctggaatttcttacccttagttggttggatgatttgaaggagtggagggtggagaaagaagccatgcctagtcttcagagattgcgcattgaatattgccgagaattgcgggcagttccagatgggcttcaggagattactaccctcaaggaattaacaattgaccggatgcccagtagattctgcagtagggttggggaaggaggagaggatttctacaaaatcaaacatgtgccttctcttataatcacaaatgagaggagtccttgggacgaggagctagaaatggaggaagcagcaggggtcaggacgatcaagaattacatcaaacgcttggttcaggaggatacagacaaagccatcgtgcttattcaacaaaatctgactccctttggaaagcgcttcataagtgagatgagatcaaagtactacttggaggttttccaggaggcagaattgttggttcaagaacatgttctagttcctgagcataaggatcttaaaaatgaggaaaagaagacattgctggagagcttagaggaatggctgcatccacttcaaataattggtctgacaaatgagagacgaacgagtttaatgttttctcagaggttgaacattgctattgacgtttctatggcattggattatctccataatcattgtgaaacctcaatagttcactgtgatctcaagcctagcaatgttctcgatgatgatatggtcgggcatgttggtgattttggcttggtaagattccttcccagaatttctggaaatcaatcaagctctgtcggagttaaaggaacaattggttatgctcctccagagtatggtatgggcaatgaagtttggacacaaaggagatgtgtacagttttggcatcctgctgttggaaatgttcacaggaagaagaccaacagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0002230 GO:0002238 GO:0002239 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009615 GO:0009620 GO:0009626 GO:0009628 GO:0009637 GO:0009642 GO:0009646 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0012501 GO:0014070 GO:0016020 GO:0023052 GO:0030054 GO:0031347 GO:0032101 GO:0032870 GO:0033554 GO:0034050 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0043207 GO:0043900 GO:0044464 GO:0045087 GO:0046677 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071944 GO:0080134 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

1106

Amino Acids

126.8

Weight (kDa)

7.93

Isoelectric Point (pI)

45.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G50180 AT1G53350 AT1G58390 AT1G58390 AT1G58400 AT1G58400 AT1G58400 AT1G58410 AT1G58410 AT1G58410 AT1G58410 AT1G58602 AT1G58602 AT1G58807 AT1G58807 AT1G58848 AT1G58848 AT1G59124 AT1G59124 AT1G59218 AT1G59218 AT1G59218 AT1G59620 AT1G59780 AT1G59780 AT5G35450 AT5G35450 AT5G43470 AT5G43470 AT5G43470 AT5G43470 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620
fragaria_vesca	FvH4_4g04072 FvH4_4g22931 FvH4_4g22931 FvH4_4g22940 FvH4_6g49940 FvH4_6g49940 FvH4_7g08100 FvH4_7g08870 FvH4_7g08870 FvH4_7g09280 FvH4_7g09290 FvH4_7g15190 FvH4_7g15200 FvH4_7g15240 FvH4_7g15240 FvH4_7g33440
malus_domestica	MD00G1174600.v1.1 MD01G1113700.v1.1 MD03G1071300.v1.1 MD04G1041500.v1.1 MD04G1238000.v1.1 MD07G1029000.v1.1 MD07G1092100.v1.1 MD07G1092300.v1.1 MD07G1092600.v1.1 MD12G1256300.v1.1 MD13G1128200.v1.1 MD13G1128400.v1.1 MD17G1268000.v1.1
prunus_persica	Prupe.1G041300_v2.0.a1 Prupe.1G041300_v2.0.a1 Prupe.1G042900_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043600_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G046700_v2.0.a1 Prupe.1G047700_v2.0.a1 Prupe.1G047900_v2.0.a1 Prupe.1G048000_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G049900_v2.0.a1 Prupe.1G051500_v2.0.a1 Prupe.1G051800_v2.0.a1 Prupe.1G051900_v2.0.a1 Prupe.1G052200_v2.0.a1 Prupe.1G194900_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117300_v2.0.a1 Prupe.2G117400_v2.0.a1 Prupe.2G117500_v2.0.a1 Prupe.2G117700_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G119900_v2.0.a1
pyrus_communis	pycom03g05750 pycom04g21110 pycom07g07530 pycom07g07590 pycom13g11110 pycom13g11140 pycom13g11160 pycom13g11170 pycom17g26680
rosa_chinensis	RchiOBHm_Chr1g0341231 RchiOBHm_Chr1g0344091 RchiOBHm_Chr1g0344161 RchiOBHm_Chr1g0345001 RchiOBHm_Chr1g0345351 RchiOBHm_Chr1g0345371 RchiOBHm_Chr1g0345391 RchiOBHm_Chr1g0345531 RchiOBHm_Chr1g0345551 RchiOBHm_Chr1g0345571 RchiOBHm_Chr1g0345581 RchiOBHm_Chr1g0345661 RchiOBHm_Chr1g0345691 RchiOBHm_Chr1g0345761 RchiOBHm_Chr1g0345791 RchiOBHm_Chr1g0345821 RchiOBHm_Chr1g0345911 RchiOBHm_Chr1g0345941 RchiOBHm_Chr1g0357611 RchiOBHm_Chr1g0357911 RchiOBHm_Chr1g0357921 RchiOBHm_Chr1g0357931 RchiOBHm_Chr1g0357971 RchiOBHm_Chr1g0358121 RchiOBHm_Chr1g0383491 RchiOBHm_Chr1g0383511 RchiOBHm_Chr1g0383521 RchiOBHm_Chr3g0480581 RchiOBHm_Chr4g0394341 RchiOBHm_Chr4g0394361 RchiOBHm_Chr4g0394411 RchiOBHm_Chr4g0394441 RchiOBHm_Chr4g0407681 RchiOBHm_Chr4g0429191 RchiOBHm_Chr4g0429201 RchiOBHm_Chr4g0429211 RchiOBHm_Chr4g0429221 RchiOBHm_Chr6g0265091
rosa_laevigata	RLG00000007088 RLG00000008700 RLG00000009190 RLG00000009702 RLG00000014210 RLG00000028829 RLG00000028833 RLG00000028837 RLG00000028838 RLG00000028921 RLG00000028926
rosa_multiflora	Rmu_co8366955.1_g000001 Rmu_co8394205.1_g000001 Rmu_sc0000019.1_g000001 Rmu_sc0000054.1_g000031 Rmu_sc0000054.1_g000033 Rmu_sc0000200.1_g000002 Rmu_sc0000200.1_g000007 Rmu_sc0000200.1_g000018 Rmu_sc0000200.1_g000020 Rmu_sc0000200.1_g000021 Rmu_sc0000251.1_g000012 Rmu_sc0000251.1_g000015 Rmu_sc0000251.1_g000028 Rmu_sc0000253.1_g000015 Rmu_sc0000255.1_g000045 Rmu_sc0000255.1_g000046 Rmu_sc0001292.1_g000013 Rmu_sc0001292.1_g000018 Rmu_sc0001292.1_g000028 Rmu_sc0001292.1_g000029 Rmu_sc0001349.1_g000006 Rmu_sc0001349.1_g000014 Rmu_sc0001582.1_g000006 Rmu_sc0001582.1_g000018 Rmu_sc0001582.1_g000020 Rmu_sc0001692.1_g000007 Rmu_sc0001692.1_g000024 Rmu_sc0001692.1_g000026 Rmu_sc0001692.1_g000029 Rmu_sc0001692.1_g000030 Rmu_sc0001835.1_g000006 Rmu_sc0001835.1_g000010 Rmu_sc0002071.1_g000005 Rmu_sc0002276.1_g000002 Rmu_sc0002276.1_g000009 Rmu_sc0002329.1_g000018 Rmu_sc0002329.1_g000023 Rmu_sc0002329.1_g000025 Rmu_sc0002523.1_g000005 Rmu_sc0003573.1_g000005 Rmu_sc0003573.1_g000006 Rmu_sc0004099.1_g000021 Rmu_sc0005812.1_g000009 Rmu_sc0006271.1_g000002 Rmu_sc0006287.1_g000038 Rmu_sc0006439.1_g000008 Rmu_sc0007456.1_g000004 Rmu_sc0007581.1_g000009 Rmu_sc0007849.1_g000014 Rmu_sc0008115.1_g000012 Rmu_sc0010521.1_g000004 Rmu_sc0012471.1_g000017 Rmu_sc0014762.1_g000001 Rmu_sc0015150.1_g000003 Rmu_sc0017221.1_g000001 Rmu_sc0017299.1_g000001 Rmu_sc0017299.1_g000002 Rmu_sc0021457.1_g000001 Rmu_sc0022067.1_g000001 Rmu_sc0033275.1_g000001 Rmu_ssc0000245.1_g000012 Rmu_ssc0000359.1_g000035 Rmu_ssc0000359.1_g000067 Rmu_ssc0000359.1_g000072 Rmu_ssc0000434.1_g000005 Rmu_ssc0000434.1_g000007
rosa_roxburghii	Rroxscaffold_4G00298420 Rroxscaffold_4G00298720 Rroxscaffold_4G00308990 Rroxscaffold_4G00309000 Rroxscaffold_4G00309010 Rroxscaffold_4G00309050 Rroxscaffold_4G00309070 Rroxscaffold_4G00309100 Rroxscaffold_4G00310030 Rroxscaffold_4G00310050 Rroxscaffold_4G00311880 Rroxscaffold_5G00339420 Rroxscaffold_5G00339450 Rroxscaffold_5G00344880 Rroxscaffold_5G00352270 Rroxscaffold_5G00362240 Rroxscaffold_5G00370840 Rroxscaffold_7G00202970
rosa_rugosa	Rorug01G0159100.1 Rorug01G0159200.1 Rorug01G0171700 Rorug01G0171900 Rorug01G0172000 Rorug01G0191700 Rorug01G0191800 Rorug01G0256900 Rorug01G0257000 Rorug01G0257100 Rorug03G0198000 Rorug03G0366300.1 Rorug03G0366400.1 Rorug03G0366500.1 Rorug04G0081200 Rorug04G0081200 Rorug04G0081200 Rorug04G0233700 Rorug04G0233800 Rorug04G0233800 Rorug06G0013300
rosa_samantha	Rh1CG138800 Rh1CG161300 Rh1CG173800 Rh1CG179800 Rh1CG180100 Rh1CG180500 Rh1CG180800 Rh1CG180900 Rh1CG194100 Rh1DG205100 Rh3AG236300 Rh4AG052000 Rh4AG052100 Rh4AG145900 Rh4AG289700 Rh4AG289800 Rh6AG136800 Rh6AG137300 Rh6BG133600 Rh6CG132000 Rh6CG134000 Rh6DG119300
rosa_wichuraiana	Rw0G003420 Rw1G015500 Rw1G016110 Rw1G016180 Rw1G016210 Rw1G016230 Rw1G016280 Rw1G016440 Rw1G016450 Rw1G016460 Rw1G016480 Rw1G017490 Rw1G024140 Rw1G024160 Rw3G022530 Rw4G004140 Rw4G004190 Rw4G011850 Rw6G011800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	408, 2639
Acc16I	TGCGCA	2 cut(s)	111, 2480
Acc65I	GGTACC	1 cut(s)	1847
AccB1I	GGYRCC	1 cut(s)	1847
AccB7I	CCANNNNNTGG	1 cut(s)	3227
AccI	GTMKAC	2 cut(s)	1012, 2193
AccIII	TCCGGA	1 cut(s)	602
AciI	CCGC	4 cut(s)	597, 1393, 1831, 2503
AclWI	GGATC	5 cut(s)	44, 124, 1212, 2146, 2898
AcoI	YGGCCR	1 cut(s)	1576
AcsI	RAATTY	6 cut(s)	74, 394, 721, 1873, 2399, 3162
AcuI	CTGAAG	8 cut(s)	23, 51, 429, 1781, 2090, 2300, 2453, 2507
AfaI	GTAC	9 cut(s)	11, 183, 280, 1044, 1078, 1809, 1849, 2822, 3267
AfeI	AGCGCT	1 cut(s)	2795
AfiI	CCNNNNNNNGG	7 cut(s)	862, 1528, 1941, 2322, 2415, 3227, 3287
AflII	CTTAAG	1 cut(s)	2320
AflIII	ACRYGT	3 cut(s)	2076, 2623, 2866
AhlI	ACTAGT	1 cut(s)	178
AjnI	CCWGG	2 cut(s)	263, 2838
AjuI	GAANNNNNNNTTGG	4 cut(s)	1852, 1884, 2370, 2402
AleI	CACNNNNGTG	1 cut(s)	189
Alw21I	GWGCWC	1 cut(s)	2241
Alw26I	GTCTC	3 cut(s)	1593, 2121, 2971
AlwI	GGATC	5 cut(s)	44, 124, 1212, 2146, 2898
Aor13HI	TCCGGA	1 cut(s)	602
Aor51HI	AGCGCT	1 cut(s)	2795
AoxI	GGCC	2 cut(s)	1188, 1576
ApeKI	GCWGC	6 cut(s)	212, 1317, 2200, 2311, 2690, 2941
ApoI	RAATTY	6 cut(s)	74, 394, 721, 1873, 2399, 3162
ArsI	GACNNNNNNTTYG	2 cut(s)	2947, 2979
Asp700I	GAANNNNTTC	1 cut(s)	2868
Asp718I	GGTACC	1 cut(s)	1847
AspLEI	GCGC	3 cut(s)	112, 2481, 2796
AspS9I	GGNCC	3 cut(s)	348, 688, 1189
AsuC2I	CCSGG	1 cut(s)	134
AsuHPI	GGTGA	7 cut(s)	443, 550, 562, 1393, 2156, 2297, 3143
AsuII	TTCGAA	2 cut(s)	1510, 2352
AvaII	GGWCC	2 cut(s)	348, 688
AxyI	CCTNAGG	2 cut(s)	1200, 1745
BaeI	ACNNNNGTAYC	2 cut(s)	1068, 1101
BalI	TGGCCA	1 cut(s)	1578
BanI	GGYRCC	1 cut(s)	1847
BanII	GRGCYC	1 cut(s)	2241
BarI	GAAGNNNNNNTAC	4 cut(s)	165, 197, 3138, 3170
BbsI	GAAGAC	5 cut(s)	995, 1519, 2459, 2918, 3314
Bbv12I	GWGCWC	1 cut(s)	2241
BbvCI	CCTCAGC	1 cut(s)	837
BbvI	GCAGC	6 cut(s)	199, 1304, 2187, 2298, 2702, 2928
BccI	CCATC	7 cut(s)	586, 1165, 1568, 1795, 2141, 2510, 2762
BcgI	CGANNNNNNTGC	2 cut(s)	3085, 3119
BciT130I	CCWGG	2 cut(s)	265, 2840
BciVI	GTATCC	2 cut(s)	671, 2734
BclI	TGATCA	1 cut(s)	820
BcnI	CCSGG	1 cut(s)	134
BcoDI	GTCTC	3 cut(s)	1593, 2121, 2971
BcuI	ACTAGT	1 cut(s)	178
BfmI	CTRYAG	2 cut(s)	655, 2578
BfoI	RGCGCY	1 cut(s)	2797
BfrI	CTTAAG	1 cut(s)	2320
BfuI	GTATCC	2 cut(s)	671, 2734
BglII	AGATCT	2 cut(s)	1340, 1825
BisI	GCNGC	8 cut(s)	213, 598, 1318, 1393, 2201, 2312, 2691, 2942
BlsI	GCNGC	8 cut(s)	214, 599, 1319, 1394, 2202, 2313, 2692, 2943
BmcAI	AGTACT	2 cut(s)	1044, 2822
Bme1390I	CCNGG	3 cut(s)	134, 265, 2840
Bme18I	GGWCC	2 cut(s)	348, 688
BmgT120I	GGNCC	3 cut(s)	348, 688, 1189
BmiI	GGNNCC	3 cut(s)	349, 601, 1849
BmrFI	CCNGG	3 cut(s)	134, 265, 2840
BmrI	ACTGGG	1 cut(s)	2562
BmsI	GCATC	8 cut(s)	199, 321, 818, 913, 942, 2553, 2953, 3286
BmuI	ACTGGG	1 cut(s)	2562
BoxI	GACNNNNGTC	1 cut(s)	1964
BpiI	GAAGAC	5 cut(s)	995, 1519, 2459, 2918, 3314
BpmI	CTGGAG	5 cut(s)	2147, 2228, 2324, 2942, 3204
Bpu10I	CCTNAGC	2 cut(s)	837, 2880
Bpu14I	TTCGAA	2 cut(s)	1510, 2352
BpuEI	CTTGAG	4 cut(s)	100, 693, 2525, 3071
BpuMI	CCSGG	1 cut(s)	134
Bsa29I	ATCGAT	1 cut(s)	334
BsaI	GGTCTC	2 cut(s)	1593, 2121
BsaJI	CCNNGG	4 cut(s)	46, 133, 2377, 2660
BsaWI	WCCGGW	3 cut(s)	602, 1477, 2559
BsaXI	ACNNNNNCTCC	4 cut(s)	262, 267, 292, 297
Bsc4I	CCNNNNNNNGG	7 cut(s)	862, 1528, 1941, 2322, 2415, 3227, 3287
Bse1I	ACTGG	7 cut(s)	540, 856, 1335, 2211, 2307, 2345, 2568
Bse21I	CCTNAGG	2 cut(s)	1200, 1745
Bse3DI	GCAATG	4 cut(s)	2915, 3012, 3103, 3244
BseAI	TCCGGA	1 cut(s)	602
BseBI	CCWGG	2 cut(s)	265, 2840
BseCI	ATCGAT	1 cut(s)	334
BseDI	CCNNGG	4 cut(s)	46, 133, 2377, 2660
BseGI	GGATG	7 cut(s)	235, 597, 809, 2428, 2568, 2944, 3277
BseLI	CCNNNNNNNGG	7 cut(s)	862, 1528, 1941, 2322, 2415, 3227, 3287
BseMI	GCAATG	4 cut(s)	2915, 3012, 3103, 3244
BseMII	CTCAG	9 cut(s)	103, 377, 851, 1191, 1736, 1745, 1877, 2871, 3014
BseNI	ACTGG	7 cut(s)	540, 856, 1335, 2211, 2307, 2345, 2568
BseRI	GAGGAG	9 cut(s)	283, 288, 662, 1043, 1454, 2613, 2668, 2684, 3207
BseXI	GCAGC	6 cut(s)	199, 1304, 2187, 2298, 2702, 2928
BseYI	CCCAGC	1 cut(s)	861
BshFI	GGCC	2 cut(s)	1190, 1578
BshNI	GGYRCC	1 cut(s)	1847
BshVI	ATCGAT	1 cut(s)	334
BsiHKAI	GWGCWC	1 cut(s)	2241
BsiSI	CCGG	5 cut(s)	133, 603, 766, 1478, 2560
BsiWI	CGTACG	1 cut(s)	9
BslFI	GGGAC	1 cut(s)	2678
BslI	CCNNNNNNNGG	7 cut(s)	862, 1528, 1941, 2322, 2415, 3227, 3287
BsmAI	GTCTC	3 cut(s)	1593, 2121, 2971
BsmBI	CGTCTC	1 cut(s)	2971
BsmFI	GGGAC	1 cut(s)	2678
BsnI	GGCC	2 cut(s)	1190, 1578
Bso31I	GGTCTC	2 cut(s)	1593, 2121
Bsp119I	TTCGAA	2 cut(s)	1510, 2352
Bsp1286I	GDGCHC	1 cut(s)	2241
Bsp13I	TCCGGA	1 cut(s)	602
Bsp1407I	TGTACA	1 cut(s)	3265
BspACI	CCGC	4 cut(s)	597, 1393, 1831, 2503
BspANI	GGCC	2 cut(s)	1190, 1578
BspCNI	CTCAG	9 cut(s)	102, 378, 850, 1192, 1737, 1746, 1878, 2872, 3013
BspDI	ATCGAT	1 cut(s)	334
BspEI	TCCGGA	1 cut(s)	602
BspHI	TCATGA	2 cut(s)	487, 1207
BspLI	GGNNCC	3 cut(s)	349, 601, 1849
BspMAI	CTGCAG	1 cut(s)	2582
BspPI	GGATC	5 cut(s)	44, 124, 1212, 2146, 2898
BspT104I	TTCGAA	2 cut(s)	1510, 2352
BspT107I	GGYRCC	1 cut(s)	1847
BspTI	CTTAAG	1 cut(s)	2320
BspTNI	GGTCTC	2 cut(s)	1593, 2121
BsrDI	GCAATG	4 cut(s)	2915, 3012, 3103, 3244
BsrGI	TGTACA	1 cut(s)	3265
BsrI	ACTGG	7 cut(s)	540, 856, 1335, 2211, 2307, 2345, 2568
BssECI	CCNNGG	4 cut(s)	46, 133, 2377, 2660
BssNAI	GTATAC	1 cut(s)	2194
BssT1I	CCWWGG	3 cut(s)	46, 2377, 2660
Bst1107I	GTATAC	1 cut(s)	2194
Bst2UI	CCWGG	2 cut(s)	265, 2840
Bst4CI	ACNGT	8 cut(s)	283, 870, 1042, 1495, 1916, 1932, 3080, 3270
Bst6I	CTCTTC	2 cut(s)	926, 1564
BstAFI	CTTAAG	1 cut(s)	2320
BstAUI	TGTACA	1 cut(s)	3265
BstBI	TTCGAA	2 cut(s)	1510, 2352
BstC8I	GCNNGC	7 cut(s)	69, 108, 310, 807, 996, 1424, 2505
BstEII	GGTNACC	1 cut(s)	2285
BstENI	CCTNNNNNAGG	1 cut(s)	1939
BstF5I	GGATG	7 cut(s)	235, 597, 809, 2428, 2568, 2944, 3277
BstH2I	RGCGCY	1 cut(s)	2797
BstHHI	GCGC	3 cut(s)	112, 2481, 2796
BstMAI	GTCTC	3 cut(s)	1593, 2121, 2971
BstMWI	GCNNNNNNNGC	4 cut(s)	26, 118, 806, 1888
BstNI	CCWGG	2 cut(s)	265, 2840
BstNSI	RCATGY	5 cut(s)	110, 2080, 2627, 2870, 3128
BstPAI	GACNNNNGTC	1 cut(s)	1964
BstPI	GGTNACC	1 cut(s)	2285
BstSCI	CCNGG	3 cut(s)	132, 263, 2838
BstSFI	CTRYAG	2 cut(s)	655, 2578
BstV1I	GCAGC	6 cut(s)	199, 1304, 2187, 2298, 2702, 2928
BstV2I	GAAGAC	5 cut(s)	995, 1519, 2459, 2918, 3314
BstX2I	RGATCY	4 cut(s)	1340, 1825, 2138, 2890
BstYI	RGATCY	4 cut(s)	1340, 1825, 2138, 2890
BstZ17I	GTATAC	1 cut(s)	2194
Bsu15I	ATCGAT	1 cut(s)	334
Bsu36I	CCTNAGG	2 cut(s)	1200, 1745
BsuI	GTATCC	2 cut(s)	671, 2734
BsuRI	GGCC	2 cut(s)	1190, 1578
BsuTUI	ATCGAT	1 cut(s)	334
BtsCI	GGATG	7 cut(s)	235, 597, 809, 2428, 2568, 2944, 3277
BtsIMutI	CAGTG	6 cut(s)	533, 863, 1293, 1500, 1921, 3076
Cac8I	GCNNGC	7 cut(s)	69, 108, 310, 807, 996, 1424, 2505
CciI	TCATGA	2 cut(s)	487, 1207
CfoI	GCGC	3 cut(s)	112, 2481, 2796
Cfr13I	GGNCC	3 cut(s)	348, 688, 1189
ClaI	ATCGAT	1 cut(s)	334
CseI	GACGC	2 cut(s)	158, 554
Csp6I	GTAC	9 cut(s)	10, 182, 279, 1043, 1077, 1808, 1848, 2821, 3266
CviQI	GTAC	9 cut(s)	10, 182, 279, 1043, 1077, 1808, 1848, 2821, 3266
EaeI	YGGCCR	1 cut(s)	1576
Eam1104I	CTCTTC	2 cut(s)	926, 1564
EarI	CTCTTC	2 cut(s)	926, 1564
Ecl136II	GAGCTC	1 cut(s)	2239
Eco130I	CCWWGG	3 cut(s)	46, 2377, 2660
Eco24I	GRGCYC	1 cut(s)	2241
Eco31I	GGTCTC	2 cut(s)	1593, 2121
Eco32I	GATATC	1 cut(s)	2085
Eco47I	GGWCC	2 cut(s)	348, 688
Eco47III	AGCGCT	1 cut(s)	2795
Eco53kI	GAGCTC	1 cut(s)	2239
Eco57I	CTGAAG	8 cut(s)	23, 51, 429, 1781, 2090, 2300, 2453, 2507
Eco81I	CCTNAGG	2 cut(s)	1200, 1745
Eco91I	GGTNACC	1 cut(s)	2285
EcoICRI	GAGCTC	1 cut(s)	2239
EcoNI	CCTNNNNNAGG	1 cut(s)	1939
EcoO65I	GGTNACC	1 cut(s)	2285
EcoRI	GAATTC	1 cut(s)	721
EcoRII	CCWGG	2 cut(s)	263, 2838
EcoRV	GATATC	1 cut(s)	2085
EcoT14I	CCWWGG	3 cut(s)	46, 2377, 2660
EcoT38I	GRGCYC	1 cut(s)	2241
ErhI	CCWWGG	3 cut(s)	46, 2377, 2660
Esp3I	CGTCTC	1 cut(s)	2971
FalI	AAGNNNNNCTT	4 cut(s)	427, 459, 2810, 2842
FaqI	GGGAC	1 cut(s)	2678
FauI	CCCGC	2 cut(s)	1824, 2496
FauNDI	CATATG	2 cut(s)	701, 1312
FbaI	TGATCA	1 cut(s)	820
FblI	GTMKAC	2 cut(s)	1012, 2193
Fnu4HI	GCNGC	8 cut(s)	213, 598, 1318, 1393, 2201, 2312, 2691, 2942
FokI	GGATG	7 cut(s)	242, 604, 796, 2435, 2575, 2931, 3264
FriOI	GRGCYC	1 cut(s)	2241
Fsp4HI	GCNGC	8 cut(s)	213, 598, 1318, 1393, 2201, 2312, 2691, 2942
FspI	TGCGCA	2 cut(s)	111, 2480
GlaI	GCGC	3 cut(s)	111, 2480, 2795
GluI	GCNGC	8 cut(s)	213, 598, 1318, 1393, 2201, 2312, 2691, 2942
GsaI	CCCAGC	1 cut(s)	865
GsuI	CTGGAG	5 cut(s)	2147, 2228, 2324, 2942, 3204
HaeII	RGCGCY	1 cut(s)	2797
HaeIII	GGCC	2 cut(s)	1190, 1578
HapII	CCGG	5 cut(s)	133, 603, 766, 1478, 2560
HgaI	GACGC	2 cut(s)	158, 554
HhaI	GCGC	3 cut(s)	112, 2481, 2796
Hin6I	GCGC	3 cut(s)	110, 2479, 2794
HinP1I	GCGC	3 cut(s)	110, 2479, 2794
HincII	GTYRAC	1 cut(s)	1462
HindII	GTYRAC	1 cut(s)	1462
HpaI	GTTAAC	1 cut(s)	1462
HpaII	CCGG	5 cut(s)	133, 603, 766, 1478, 2560
HphI	GGTGA	7 cut(s)	443, 550, 562, 1393, 2156, 2297, 3143
Hpy166II	GTNNAC	9 cut(s)	86, 184, 1013, 1462, 1741, 2194, 3076, 3266, 3298
Hpy8I	GTNNAC	9 cut(s)	86, 184, 1013, 1462, 1741, 2194, 3076, 3266, 3298
HpyCH4III	ACNGT	8 cut(s)	283, 870, 1042, 1495, 1916, 1932, 3080, 3270
HpyCH4IV	ACGT	4 cut(s)	12, 1961, 1987, 3024
HpyF10VI	GCNNNNNNNGC	4 cut(s)	26, 118, 806, 1888
HpySE526I	ACGT	4 cut(s)	12, 1961, 1987, 3024
HspAI	GCGC	3 cut(s)	110, 2479, 2794
Kpn2I	TCCGGA	1 cut(s)	602
KpnI	GGTACC	1 cut(s)	1851
Ksp22I	TGATCA	1 cut(s)	820
KspAI	GTTAAC	1 cut(s)	1462
LmnI	GCTCC	5 cut(s)	605, 1879, 2244, 2671, 3220
Lsp1109I	GCAGC	6 cut(s)	199, 1304, 2187, 2298, 2702, 2928
LweI	GCATC	8 cut(s)	199, 321, 818, 913, 942, 2553, 2953, 3286
MaeII	ACGT	4 cut(s)	12, 1961, 1987, 3024
MaeIII	GTNAC	6 cut(s)	1219, 1412, 1713, 1910, 2226, 2285
MfeI	CAATTG	3 cut(s)	1725, 2553, 3204
MflI	RGATCY	4 cut(s)	1340, 1825, 2138, 2890
MhlI	GDGCHC	1 cut(s)	2241
MlsI	TGGCCA	1 cut(s)	1578
MluNI	TGGCCA	1 cut(s)	1578
MlyI	GAGTC	8 cut(s)	81, 700, 1225, 1686, 1765, 2057, 2665, 2773
MmeI	TCCRAC	6 cut(s)	495, 688, 2040, 2400, 3169, 3268
Mox20I	TGGCCA	1 cut(s)	1578
MroI	TCCGGA	1 cut(s)	602
MroXI	GAANNNNTTC	1 cut(s)	2868
MscI	TGGCCA	1 cut(s)	1578
MslI	CAYNNNNRTG	3 cut(s)	189, 989, 3129
Msp20I	TGGCCA	1 cut(s)	1578
MspCI	CTTAAG	1 cut(s)	2320
MspI	CCGG	5 cut(s)	133, 603, 766, 1478, 2560
MspR9I	CCNGG	3 cut(s)	134, 265, 2840
MunI	CAATTG	3 cut(s)	1725, 2553, 3204
MvaI	CCWGG	2 cut(s)	265, 2840
MwoI	GCNNNNNNNGC	4 cut(s)	26, 118, 806, 1888
NciI	CCSGG	1 cut(s)	134
NdeI	CATATG	2 cut(s)	701, 1312
NlaIV	GGNNCC	3 cut(s)	349, 601, 1849
NmeAIII	GCCGAG	1 cut(s)	2519
NmuCI	GTSAC	2 cut(s)	1412, 2285
NsbI	TGCGCA	2 cut(s)	111, 2480
NspI	RCATGY	5 cut(s)	110, 2080, 2627, 2870, 3128
NspV	TTCGAA	2 cut(s)	1510, 2352
OliI	CACNNNNGTG	1 cut(s)	189
PaeI	GCATGC	1 cut(s)	110
PagI	TCATGA	2 cut(s)	487, 1207
PciI	ACATGT	3 cut(s)	2076, 2623, 2866
PdmI	GAANNNNTTC	1 cut(s)	2868
PfeI	GAWTC	8 cut(s)	239, 331, 738, 1348, 1732, 2354, 2574, 3150
Pfl23II	CGTACG	1 cut(s)	9
PflMI	CCANNNNNTGG	1 cut(s)	3227
PfoI	TCCNGGA	2 cut(s)	263, 2838
PkrI	GCNGC	8 cut(s)	214, 599, 1319, 1394, 2202, 2313, 2692, 2943
PleI	GAGTC	8 cut(s)	81, 700, 1225, 1685, 1764, 2056, 2664, 2773
PpsI	GAGTC	8 cut(s)	81, 700, 1225, 1685, 1764, 2056, 2664, 2773
PscI	ACATGT	3 cut(s)	2076, 2623, 2866
PshAI	GACNNNNGTC	1 cut(s)	1964
PsiI	TTATAA	2 cut(s)	408, 2639
Psp124BI	GAGCTC	1 cut(s)	2241
Psp6I	CCWGG	2 cut(s)	263, 2838
PspEI	GGTNACC	1 cut(s)	2285
PspFI	CCCAGC	1 cut(s)	861
PspGI	CCWGG	2 cut(s)	263, 2838
PspLI	CGTACG	1 cut(s)	9
PspN4I	GGNNCC	3 cut(s)	349, 601, 1849
PspPI	GGNCC	3 cut(s)	348, 688, 1189
PstI	CTGCAG	1 cut(s)	2582
PsuI	RGATCY	4 cut(s)	1340, 1825, 2138, 2890
RsaI	GTAC	9 cut(s)	11, 183, 280, 1044, 1078, 1809, 1849, 2822, 3267
RsaNI	GTAC	9 cut(s)	10, 182, 279, 1043, 1077, 1808, 1848, 2821, 3266
RseI	CAYNNNNRTG	3 cut(s)	189, 989, 3129
SacI	GAGCTC	1 cut(s)	2241
SatI	GCNGC	8 cut(s)	213, 598, 1318, 1393, 2201, 2312, 2691, 2942
Sau96I	GGNCC	3 cut(s)	348, 688, 1189
ScaI	AGTACT	2 cut(s)	1044, 2822
SchI	GAGTC	8 cut(s)	81, 700, 1225, 1686, 1765, 2057, 2665, 2773
ScrFI	CCNGG	3 cut(s)	134, 265, 2840
SduI	GDGCHC	1 cut(s)	2241
SfaNI	GCATC	8 cut(s)	199, 321, 818, 913, 942, 2553, 2953, 3286
SfcI	CTRYAG	2 cut(s)	655, 2578
SfuI	TTCGAA	2 cut(s)	1510, 2352
SinI	GGWCC	2 cut(s)	348, 688
SmiMI	CAYNNNNRTG	3 cut(s)	189, 989, 3129
SmlI	CTYRAG	5 cut(s)	79, 708, 2320, 2540, 3086
SmoI	CTYRAG	5 cut(s)	79, 708, 2320, 2540, 3086
SpeI	ACTAGT	1 cut(s)	178
SphI	GCATGC	1 cut(s)	110
SsiI	CCGC	4 cut(s)	597, 1393, 1831, 2503
SspI	AATATT	1 cut(s)	2489
SstI	GAGCTC	1 cut(s)	2241
StyD4I	CCNGG	3 cut(s)	132, 263, 2838
StyI	CCWWGG	3 cut(s)	46, 2377, 2660
TaaI	ACNGT	8 cut(s)	283, 870, 1042, 1495, 1916, 1932, 3080, 3270
TaiI	ACGT	4 cut(s)	15, 1964, 1990, 3027
TaqI	TCGA	8 cut(s)	334, 392, 725, 1124, 1510, 2337, 2352, 3105
TaqII	GACCGA	1 cut(s)	2103
TatI	WGTACW	4 cut(s)	181, 1042, 2820, 3265
TauI	GCSGC	2 cut(s)	600, 1395
TfiI	GAWTC	8 cut(s)	239, 331, 738, 1348, 1732, 2354, 2574, 3150
TscAI	CASTG	6 cut(s)	540, 863, 1293, 1500, 1921, 3083
TseFI	GTSAC	2 cut(s)	1412, 2285
TseI	GCWGC	6 cut(s)	212, 1317, 2200, 2311, 2690, 2941
Tsp45I	GTSAC	2 cut(s)	1412, 2285
TspDTI	ATGAA	8 cut(s)	46, 186, 336, 504, 651, 950, 2788, 3255
TspRI	CASTG	6 cut(s)	540, 863, 1293, 1500, 1921, 3083
Van91I	CCANNNNNTGG	1 cut(s)	3227
Vha464I	CTTAAG	1 cut(s)	2320
VpaK11BI	GGWCC	2 cut(s)	348, 688
XagI	CCTNNNNNAGG	1 cut(s)	1939
XapI	RAATTY	6 cut(s)	74, 394, 721, 1873, 2399, 3162
XbaI	TCTAGA	1 cut(s)	1822
XceI	RCATGY	5 cut(s)	110, 2080, 2627, 2870, 3128
XmiI	GTMKAC	2 cut(s)	1012, 2193
XmnI	GAANNNNTTC	1 cut(s)	2868
ZrmI	AGTACT	2 cut(s)	1044, 2822

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.