Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000069

Physical Location & Seq

Genomic Coordinates Reverse (-)

30632183 .. 30639226

Gene Structure 7044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00309010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2130 bp

ATGGAAGATGTATCATATGGTTGCCTAACTGAACTGGTGCAAAGATCTATGGTTCAAGTTGGAAAATATGGTTTTAGTGGGAAGGTGAAAAGTTGCCGTCTCCATGATCTGATGCGGGACTTGTGCTTGCAAAAGGCAAAAGAGGAGAACTTTCTTGGTATTGTTAACTTTTCTGTGCGTCCCGTATCTTATGCAACACTGATTGGTAAGGTTCGAAGACTTGCCTTCTATTTGGATAGAAATGTTAAATATGAGTTCAGTAGTGAGAATGGAAGAGATGGCCACATTAGGTCTCTATTATACTTTGCCCCAGAAAAGTTCAACCAAAAGTGGAACAAAAGAATAATACGATCAGTATTCAATGACTTCAATCTGATTAGAGTCTTGAAGTTTGAAAATATATGTAGGGAGTTTGAGTTACCAAAGACGATTGGGAATCTAGTCCACCTAAGGTTTCTGAGTCTGAAGAATAGTGCATTTCGTGGGTTGCCATCATCTGTATCTAATCTGGTACTTTTGCAAACTCTAGATCTGCGGGGTAGTATTCTAGATGATGGATCTTGTTTTTGGATTGAGTGGGACAGGGATACCAAAATCAGAAATGTGTTTTGGAATATGGAGCAACTGAGGCATTTGTATTTACCTCTTCGGTACAGTGTCAAGGGAAAACTGTCATTTGCAAGGTTGTTCAATTTGCAGACATTGGTCAATGTTTCGATATCCGATCTGAATGATCTTGTTCACTTAAGCAATCTGAAGAAACTACGCATAAGGTCAGGTCGAACAAAATTTAAGGATGACCAGATTAAAATACTGGAGAAGCTGCCCAACTTAAGGGTGCTTTGCCTTGATTGTCTTTCTTTCGAATCAGAAACATTGGTTTTCCCCCAAGGAGGCTTTCCTCATCTGGAATTTCTTACCCTTTATGAACTGGTGGATTTGAAGGAGTGGAGGGTGGAGAAAGAAGCCATGCCTAGTCTTCAGAGATTGCGCATTGAATGGTGCTACGGATTGCGGGCAGTTCCAGATGGGCTTCAGGAGATTACTACCCTCAAGGAATTAACAATTGACCGGATGCCCAGTAGATTCCGCAGTAGGGATGAGCCAGAAATGGAGGAAGCAGCACGTGCGTCTCAAGTAGTTGCGGGTCCAGCTGGTGACTCCCATCAGGAATCAACTGTGGTTGGAAAGATGGTTTTGACAGAAGATGAAATTACGAGGCTCTATAGAAAGACAGTGATGCAAATGCTGAAAGATCAGGATTATCTAATTGTTGATCATGATCTCAACATGACAATGTCGCAGTTTAAAAACAAACATGGAGAGAACATGAAAAGGGAGGACCTTACTATCAATAGAAGGAAGAGAGGTGACGAGTCTGATCAGATTTATGTGTTTTTCCCTGACGAACCAAAAGTTGGGTTCAAGACAATGAAGAGTTACATTACACGCATGAATCAGGAGAATGTGATTAGAGCAATCTTAGTTGCTCAACAAAATCTGACTCCTTTTGCAAAGACCTCCATTAGTGAGATGGGTTCAAAGTACCACTTGGAGATTTTCCAGGAGGCAGAATTGTTGGTAAATATTAAAGAGCATGTTCTAGTTCCTGAGCATTGGGTTCTTACAAATGAGGAAAAAAAGACTTTGATGGAGAGGTATACTGTGAAAGAAACACAGCTTCCTCGTATTCAGCTGATTGATCCAATTGCAAGATATTACGGGCTTAAGCGTGGACAAGTTGTGAAGATAATCCGGCCTAGTGAGACTGCAGGACGATATGTCACCTACCATGATGAGCCGGAAATGGAGGAAGCTGCAGGTGCGTCTCAAGTAGTTGCGGGTCCAGCTGGTGACTCATCAGGAATCAACTGTGGACGCCTGTTAGATGGATATTTTGCTACTGTTAGATTGTTCCGCGAACACTATAATTGGGCCACATGTTATGGCCTTTTCTCACATAAGATTTATGTGTTTTTCTCTGACGAACCAAAAGTTGGGGTCAAGACAATCAAGAATTACATCAAATGCGTGGTTCAGGAGGATATGGACACAGGCATCATGGTTATTCAACAAAATCTGACTCCTTTTGCAAAACTCGTCATAAGTGAGATGAGATCAAAGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0002230 GO:0002238 GO:0002239 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009615 GO:0009620 GO:0009626 GO:0009628 GO:0009637 GO:0009642 GO:0009646 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0012501 GO:0014070 GO:0016020 GO:0023052 GO:0030054 GO:0031347 GO:0032101 GO:0032870 GO:0033554 GO:0034050 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0043207 GO:0043900 GO:0044464 GO:0045087 GO:0046677 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071944 GO:0080134 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

709

Amino Acids

82.42

Weight (kDa)

8.88

Isoelectric Point (pI)

40.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_DRP	PF23559	1 - 42	5.2e-08	Disease resistance protein Winged helix domain
LRR_14	PF23598	118 - 259	5.5e-16	Leucine-rich repeat region
LRR_14	PF23598	201 - 376	1.4e-11	Leucine-rich repeat region
RNA_pol_Rpb5_N	PF03871	402 - 485	2.7e-24	RNA polymerase Rpb5, N-terminal domain
RNA_pol_Rpb5_C	PF01191	528 - 597	3.3e-31	RNA polymerase Rpb5, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G50180 AT1G53350 AT1G58390 AT1G58390 AT1G58400 AT1G58400 AT1G58400 AT1G58410 AT1G58410 AT1G58410 AT1G58410 AT1G58602 AT1G58602 AT1G58807 AT1G58807 AT1G58848 AT1G58848 AT1G59124 AT1G59124 AT1G59218 AT1G59218 AT1G59218 AT1G59620 AT1G59780 AT1G59780 AT5G35450 AT5G35450 AT5G43470 AT5G43470 AT5G43470 AT5G43470 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620
fragaria_vesca	FvH4_4g04072 FvH4_4g22931 FvH4_4g22931 FvH4_4g22940 FvH4_6g49940 FvH4_6g49940 FvH4_7g08100 FvH4_7g08870 FvH4_7g08870 FvH4_7g09280 FvH4_7g09290 FvH4_7g15190 FvH4_7g15200 FvH4_7g15240 FvH4_7g15240 FvH4_7g33440
malus_domestica	MD00G1174600.v1.1 MD01G1113700.v1.1 MD03G1071300.v1.1 MD04G1041500.v1.1 MD04G1238000.v1.1 MD07G1029000.v1.1 MD07G1092100.v1.1 MD07G1092300.v1.1 MD07G1092600.v1.1 MD12G1256300.v1.1 MD13G1128200.v1.1 MD13G1128400.v1.1 MD17G1268000.v1.1
prunus_persica	Prupe.1G041300_v2.0.a1 Prupe.1G041300_v2.0.a1 Prupe.1G042900_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043600_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G046700_v2.0.a1 Prupe.1G047700_v2.0.a1 Prupe.1G047900_v2.0.a1 Prupe.1G048000_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G049900_v2.0.a1 Prupe.1G051500_v2.0.a1 Prupe.1G051800_v2.0.a1 Prupe.1G051900_v2.0.a1 Prupe.1G052200_v2.0.a1 Prupe.1G194900_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117300_v2.0.a1 Prupe.2G117400_v2.0.a1 Prupe.2G117500_v2.0.a1 Prupe.2G117700_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G119900_v2.0.a1
pyrus_communis	pycom03g05750 pycom04g21110 pycom07g07530 pycom07g07590 pycom13g11110 pycom13g11140 pycom13g11160 pycom13g11170 pycom17g26680
rosa_chinensis	RchiOBHm_Chr1g0341231 RchiOBHm_Chr1g0344091 RchiOBHm_Chr1g0344161 RchiOBHm_Chr1g0345001 RchiOBHm_Chr1g0345351 RchiOBHm_Chr1g0345371 RchiOBHm_Chr1g0345391 RchiOBHm_Chr1g0345531 RchiOBHm_Chr1g0345551 RchiOBHm_Chr1g0345571 RchiOBHm_Chr1g0345581 RchiOBHm_Chr1g0345661 RchiOBHm_Chr1g0345691 RchiOBHm_Chr1g0345761 RchiOBHm_Chr1g0345791 RchiOBHm_Chr1g0345821 RchiOBHm_Chr1g0345911 RchiOBHm_Chr1g0345941 RchiOBHm_Chr1g0357611 RchiOBHm_Chr1g0357911 RchiOBHm_Chr1g0357921 RchiOBHm_Chr1g0357931 RchiOBHm_Chr1g0357971 RchiOBHm_Chr1g0358121 RchiOBHm_Chr1g0383491 RchiOBHm_Chr1g0383511 RchiOBHm_Chr1g0383521 RchiOBHm_Chr3g0480581 RchiOBHm_Chr4g0394341 RchiOBHm_Chr4g0394361 RchiOBHm_Chr4g0394411 RchiOBHm_Chr4g0394441 RchiOBHm_Chr4g0407681 RchiOBHm_Chr4g0429191 RchiOBHm_Chr4g0429201 RchiOBHm_Chr4g0429211 RchiOBHm_Chr4g0429221 RchiOBHm_Chr6g0265091
rosa_laevigata	RLG00000007088 RLG00000008700 RLG00000009190 RLG00000009702 RLG00000014210 RLG00000028829 RLG00000028833 RLG00000028837 RLG00000028838 RLG00000028921 RLG00000028926
rosa_multiflora	Rmu_co8366955.1_g000001 Rmu_co8394205.1_g000001 Rmu_sc0000019.1_g000001 Rmu_sc0000054.1_g000031 Rmu_sc0000054.1_g000033 Rmu_sc0000200.1_g000002 Rmu_sc0000200.1_g000007 Rmu_sc0000200.1_g000018 Rmu_sc0000200.1_g000020 Rmu_sc0000200.1_g000021 Rmu_sc0000251.1_g000012 Rmu_sc0000251.1_g000015 Rmu_sc0000251.1_g000028 Rmu_sc0000253.1_g000015 Rmu_sc0000255.1_g000045 Rmu_sc0000255.1_g000046 Rmu_sc0001292.1_g000013 Rmu_sc0001292.1_g000018 Rmu_sc0001292.1_g000028 Rmu_sc0001292.1_g000029 Rmu_sc0001349.1_g000006 Rmu_sc0001349.1_g000014 Rmu_sc0001582.1_g000006 Rmu_sc0001582.1_g000018 Rmu_sc0001582.1_g000020 Rmu_sc0001692.1_g000007 Rmu_sc0001692.1_g000024 Rmu_sc0001692.1_g000026 Rmu_sc0001692.1_g000029 Rmu_sc0001692.1_g000030 Rmu_sc0001835.1_g000006 Rmu_sc0001835.1_g000010 Rmu_sc0002071.1_g000005 Rmu_sc0002276.1_g000002 Rmu_sc0002276.1_g000009 Rmu_sc0002329.1_g000018 Rmu_sc0002329.1_g000023 Rmu_sc0002329.1_g000025 Rmu_sc0002523.1_g000005 Rmu_sc0003573.1_g000005 Rmu_sc0003573.1_g000006 Rmu_sc0004099.1_g000021 Rmu_sc0005812.1_g000009 Rmu_sc0006271.1_g000002 Rmu_sc0006287.1_g000038 Rmu_sc0006439.1_g000008 Rmu_sc0007456.1_g000004 Rmu_sc0007581.1_g000009 Rmu_sc0007849.1_g000014 Rmu_sc0008115.1_g000012 Rmu_sc0010521.1_g000004 Rmu_sc0012471.1_g000017 Rmu_sc0014762.1_g000001 Rmu_sc0015150.1_g000003 Rmu_sc0017221.1_g000001 Rmu_sc0017299.1_g000001 Rmu_sc0017299.1_g000002 Rmu_sc0021457.1_g000001 Rmu_sc0022067.1_g000001 Rmu_sc0033275.1_g000001 Rmu_ssc0000245.1_g000012 Rmu_ssc0000359.1_g000035 Rmu_ssc0000359.1_g000067 Rmu_ssc0000359.1_g000072 Rmu_ssc0000434.1_g000005 Rmu_ssc0000434.1_g000007
rosa_roxburghii	Rroxscaffold_4G00298420 Rroxscaffold_4G00298720 Rroxscaffold_4G00308990 Rroxscaffold_4G00309000 Rroxscaffold_4G00309010 Rroxscaffold_4G00309050 Rroxscaffold_4G00309070 Rroxscaffold_4G00309100 Rroxscaffold_4G00310030 Rroxscaffold_4G00310050 Rroxscaffold_4G00311880 Rroxscaffold_5G00339420 Rroxscaffold_5G00339450 Rroxscaffold_5G00344880 Rroxscaffold_5G00352270 Rroxscaffold_5G00362240 Rroxscaffold_5G00370840 Rroxscaffold_7G00202970
rosa_rugosa	Rorug01G0159100.1 Rorug01G0159200.1 Rorug01G0171700 Rorug01G0171900 Rorug01G0172000 Rorug01G0191700 Rorug01G0191800 Rorug01G0256900 Rorug01G0257000 Rorug01G0257100 Rorug03G0198000 Rorug03G0366300.1 Rorug03G0366400.1 Rorug03G0366500.1 Rorug04G0081200 Rorug04G0081200 Rorug04G0081200 Rorug04G0233700 Rorug04G0233800 Rorug04G0233800 Rorug06G0013300
rosa_samantha	Rh1CG138800 Rh1CG161300 Rh1CG173800 Rh1CG179800 Rh1CG180100 Rh1CG180500 Rh1CG180800 Rh1CG180900 Rh1CG194100 Rh1DG205100 Rh3AG236300 Rh4AG052000 Rh4AG052100 Rh4AG145900 Rh4AG289700 Rh4AG289800 Rh6AG136800 Rh6AG137300 Rh6BG133600 Rh6CG132000 Rh6CG134000 Rh6DG119300
rosa_wichuraiana	Rw0G003420 Rw1G015500 Rw1G016110 Rw1G016180 Rw1G016210 Rw1G016230 Rw1G016280 Rw1G016440 Rw1G016450 Rw1G016460 Rw1G016480 Rw1G017490 Rw1G024140 Rw1G024160 Rw3G022530 Rw4G004140 Rw4G004190 Rw4G011850 Rw6G011800

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1811
Acc16I	TGCGCA	1 cut(s)	992
Acc36I	ACCTGC	1 cut(s)	1811
AccB7I	CCANNNNNTGG	2 cut(s)	1418, 1997
AccI	GTMKAC	1 cut(s)	1661
AccII	CGCG	1 cut(s)	1920
AciI	CCGC	7 cut(s)	115, 535, 1015, 1090, 1145, 1841, 1918
AclWI	GGATC	2 cut(s)	565, 1697
AcoI	YGGCCR	1 cut(s)	280
AcsI	RAATTY	2 cut(s)	788, 911
AcuI	CTGAAG	4 cut(s)	485, 776, 965, 1019
AcvI	CACGTG	1 cut(s)	1127
AcyI	GRCGYC	1 cut(s)	1879
AfaI	GTAC	3 cut(s)	513, 653, 1547
AfiI	CCNNNNNNNGG	5 cut(s)	834, 893, 1096, 1418, 1997
AflII	CTTAAG	3 cut(s)	745, 832, 1727
AflIII	ACRYGT	1 cut(s)	1940
AhdI	GACNNNNNGTC	1 cut(s)	1781
AjnI	CCWGG	1 cut(s)	1563
AjuI	GAANNNNNNNTTGG	8 cut(s)	592, 624, 882, 914, 1401, 1433, 1980, 2012
AluBI	AGCT	6 cut(s)	823, 1154, 1681, 1696, 1817, 1850
AluI	AGCT	6 cut(s)	823, 1154, 1681, 1696, 1817, 1850
Alw26I	GTCTC	5 cut(s)	104, 297, 1137, 1760, 1833
AlwI	GGATC	2 cut(s)	565, 1697
AoxI	GGCC	4 cut(s)	280, 1757, 1935, 1948
ApeKI	GCWGC	3 cut(s)	823, 1121, 1817
ApoI	RAATTY	2 cut(s)	788, 911
AspLEI	GCGC	1 cut(s)	993
AspS9I	GGNCC	4 cut(s)	1148, 1342, 1844, 1935
AsuHPI	GGTGA	5 cut(s)	97, 1169, 1382, 1777, 1865
AsuII	TTCGAA	2 cut(s)	214, 864
AvaII	GGWCC	3 cut(s)	1148, 1342, 1844
AxyI	CCTNAGG	1 cut(s)	449
BalI	TGGCCA	1 cut(s)	282
BbrPI	CACGTG	1 cut(s)	1127
BbsI	GAAGAC	2 cut(s)	223, 971
BbvI	GCAGC	3 cut(s)	810, 1133, 1804
BccI	CCATC	9 cut(s)	272, 499, 548, 1022, 1173, 1186, 1528, 1645, 1883
BceAI	ACGGC	1 cut(s)	81
BciT130I	CCWGG	1 cut(s)	1565
BciVI	GTATCC	1 cut(s)	580
BclI	TGATCA	2 cut(s)	1276, 1381
BcoDI	GTCTC	5 cut(s)	104, 297, 1137, 1760, 1833
BfaI	CTAG	6 cut(s)	440, 527, 548, 975, 1604, 1761
BfmI	CTRYAG	3 cut(s)	1225, 1770, 1818
BfrI	CTTAAG	3 cut(s)	745, 832, 1727
BfuAI	ACCTGC	1 cut(s)	1811
BfuI	GTATCC	1 cut(s)	580
BglII	AGATCT	2 cut(s)	44, 529
BisI	GCNGC	3 cut(s)	824, 1122, 1818
BlsI	GCNGC	3 cut(s)	825, 1123, 1819
Bme1390I	CCNGG	1 cut(s)	1565
Bme18I	GGWCC	3 cut(s)	1148, 1342, 1844
BmeRI	GACNNNNNGTC	1 cut(s)	1781
BmgT120I	GGNCC	4 cut(s)	1148, 1342, 1844, 1935
BmiI	GGNNCC	2 cut(s)	1149, 1845
BmrFI	CCNGG	1 cut(s)	1565
BmrI	ACTGGG	1 cut(s)	1074
BmsI	GCATC	4 cut(s)	102, 1065, 1230, 2067
BmuI	ACTGGG	1 cut(s)	1074
BoxI	GACNNNNGTC	1 cut(s)	704
BpiI	GAAGAC	2 cut(s)	223, 971
BpmI	CTGGAG	1 cut(s)	836
Bpu10I	CCTNAGC	1 cut(s)	1611
Bpu14I	TTCGAA	2 cut(s)	214, 864
BpuEI	CTTGAG	3 cut(s)	1037, 1119, 1815
BsaAI	YACGTR	1 cut(s)	1127
BsaBI	GATNNNNATC	1 cut(s)	1281
BsaHI	GRCGYC	1 cut(s)	1879
BsaI	GGTCTC	1 cut(s)	297
BsaJI	CCNNGG	1 cut(s)	889
BsaWI	WCCGGW	1 cut(s)	1071
BsaXI	ACNNNNNCTCC	2 cut(s)	401, 431
Bsc4I	CCNNNNNNNGG	5 cut(s)	834, 893, 1096, 1418, 1997
Bse1I	ACTGG	4 cut(s)	39, 819, 936, 1080
Bse21I	CCTNAGG	1 cut(s)	449
Bse8I	GATNNNNATC	1 cut(s)	1281
BseBI	CCWGG	1 cut(s)	1565
BseDI	CCNNGG	1 cut(s)	889
BseGI	GGATG	3 cut(s)	802, 1080, 1105
BseJI	GATNNNNATC	1 cut(s)	1281
BseLI	CCNNNNNNNGG	5 cut(s)	834, 893, 1096, 1418, 1997
BseMII	CTCAG	3 cut(s)	449, 617, 1602
BseNI	ACTGG	4 cut(s)	39, 819, 936, 1080
BseRI	GAGGAG	1 cut(s)	158
BseXI	GCAGC	3 cut(s)	810, 1133, 1804
Bsh1236I	CGCG	1 cut(s)	1920
BshFI	GGCC	4 cut(s)	282, 1759, 1937, 1950
BsiSI	CCGG	3 cut(s)	1072, 1756, 1802
BslFI	GGGAC	3 cut(s)	131, 165, 593
BslI	CCNNNNNNNGG	5 cut(s)	834, 893, 1096, 1418, 1997
BsmAI	GTCTC	5 cut(s)	104, 297, 1137, 1760, 1833
BsmBI	CGTCTC	3 cut(s)	104, 1137, 1833
BsmFI	GGGAC	3 cut(s)	131, 165, 593
BsnI	GGCC	4 cut(s)	282, 1759, 1937, 1950
Bso31I	GGTCTC	1 cut(s)	297
Bsp119I	TTCGAA	2 cut(s)	214, 864
BspACI	CCGC	7 cut(s)	115, 535, 1015, 1090, 1145, 1841, 1918
BspANI	GGCC	4 cut(s)	282, 1759, 1937, 1950
BspCNI	CTCAG	3 cut(s)	450, 618, 1603
BspFNI	CGCG	1 cut(s)	1920
BspHI	TCATGA	1 cut(s)	1279
BspLI	GGNNCC	2 cut(s)	1149, 1845
BspMAI	CTGCAG	2 cut(s)	1774, 1822
BspMI	ACCTGC	1 cut(s)	1811
BspPI	GGATC	2 cut(s)	565, 1697
BspT104I	TTCGAA	2 cut(s)	214, 864
BspTI	CTTAAG	3 cut(s)	745, 832, 1727
BspTNI	GGTCTC	1 cut(s)	297
BsrI	ACTGG	4 cut(s)	39, 819, 936, 1080
BssECI	CCNNGG	1 cut(s)	889
BssNAI	GTATAC	1 cut(s)	1662
BssNI	GRCGYC	1 cut(s)	1879
BssT1I	CCWWGG	1 cut(s)	889
Bst1107I	GTATAC	1 cut(s)	1662
Bst2UI	CCWGG	1 cut(s)	1565
Bst4CI	ACNGT	7 cut(s)	656, 672, 1180, 1237, 1666, 1874, 1906
Bst6I	CTCTTC	4 cut(s)	268, 651, 1358, 1430
BstACI	GRCGYC	1 cut(s)	1879
BstAFI	CTTAAG	3 cut(s)	745, 832, 1727
BstAPI	GCANNNNNTGC	1 cut(s)	1127
BstBAI	YACGTR	1 cut(s)	1127
BstBI	TTCGAA	2 cut(s)	214, 864
BstC8I	GCNNGC	2 cut(s)	128, 1017
BstDEI	CTNAG	5 cut(s)	449, 458, 626, 1483, 1611
BstF5I	GGATG	3 cut(s)	802, 1080, 1105
BstFNI	CGCG	1 cut(s)	1920
BstHHI	GCGC	1 cut(s)	993
BstMAI	GTCTC	5 cut(s)	104, 297, 1137, 1760, 1833
BstMWI	GCNNNNNNNGC	5 cut(s)	628, 1127, 1151, 1823, 1847
BstNI	CCWGG	1 cut(s)	1565
BstNSI	RCATGY	2 cut(s)	1601, 1944
BstPAI	GACNNNNGTC	1 cut(s)	704
BstSCI	CCNGG	1 cut(s)	1563
BstSFI	CTRYAG	3 cut(s)	1225, 1770, 1818
BstUI	CGCG	1 cut(s)	1920
BstV1I	GCAGC	3 cut(s)	810, 1133, 1804
BstV2I	GAAGAC	2 cut(s)	223, 971
BstX2I	RGATCY	3 cut(s)	44, 529, 557
BstYI	RGATCY	3 cut(s)	44, 529, 557
BstZ17I	GTATAC	1 cut(s)	1662
Bsu36I	CCTNAGG	1 cut(s)	449
BsuI	GTATCC	1 cut(s)	580
BsuRI	GGCC	4 cut(s)	282, 1759, 1937, 1950
BtsCI	GGATG	3 cut(s)	802, 1080, 1105
BtsIMutI	CAGTG	3 cut(s)	197, 661, 1242
BveI	ACCTGC	1 cut(s)	1811
Cac8I	GCNNGC	2 cut(s)	128, 1017
CciI	TCATGA	1 cut(s)	1279
CfoI	GCGC	1 cut(s)	993
Cfr13I	GGNCC	4 cut(s)	1148, 1342, 1844, 1935
CseI	GACGC	4 cut(s)	167, 1119, 1815, 1887
Csp6I	GTAC	3 cut(s)	512, 652, 1546
CviQI	GTAC	3 cut(s)	512, 652, 1546
DdeI	CTNAG	5 cut(s)	449, 458, 626, 1483, 1611
DraI	TTTAAA	1 cut(s)	1309
DriI	GACNNNNNGTC	1 cut(s)	1781
EaeI	YGGCCR	1 cut(s)	280
Eam1104I	CTCTTC	4 cut(s)	268, 651, 1358, 1430
Eam1105I	GACNNNNNGTC	1 cut(s)	1781
EarI	CTCTTC	4 cut(s)	268, 651, 1358, 1430
Eco130I	CCWWGG	1 cut(s)	889
Eco31I	GGTCTC	1 cut(s)	297
Eco32I	GATATC	1 cut(s)	720
Eco47I	GGWCC	3 cut(s)	1148, 1342, 1844
Eco57I	CTGAAG	4 cut(s)	485, 776, 965, 1019
Eco72I	CACGTG	1 cut(s)	1127
Eco81I	CCTNAGG	1 cut(s)	449
EcoO109I	RGGNCCY	1 cut(s)	1342
EcoRII	CCWGG	1 cut(s)	1563
EcoRV	GATATC	1 cut(s)	720
EcoT14I	CCWWGG	1 cut(s)	889
ErhI	CCWWGG	1 cut(s)	889
Esp3I	CGTCTC	3 cut(s)	104, 1137, 1833
FalI	AAGNNNNNCTT	2 cut(s)	1535, 1567
FaqI	GGGAC	3 cut(s)	131, 165, 593
FauI	CCCGC	5 cut(s)	108, 528, 1008, 1138, 1834
FauNDI	CATATG	1 cut(s)	16
FbaI	TGATCA	2 cut(s)	1276, 1381
FblI	GTMKAC	1 cut(s)	1661
Fnu4HI	GCNGC	3 cut(s)	824, 1122, 1818
FokI	GGATG	3 cut(s)	809, 1087, 1112
Fsp4HI	GCNGC	3 cut(s)	824, 1122, 1818
FspBI	CTAG	6 cut(s)	440, 527, 548, 975, 1604, 1761
FspI	TGCGCA	1 cut(s)	992
GlaI	GCGC	1 cut(s)	992
GluI	GCNGC	3 cut(s)	824, 1122, 1818
GsuI	CTGGAG	1 cut(s)	836
HaeIII	GGCC	4 cut(s)	282, 1759, 1937, 1950
HapII	CCGG	3 cut(s)	1072, 1756, 1802
HgaI	GACGC	4 cut(s)	167, 1119, 1815, 1887
HhaI	GCGC	1 cut(s)	993
Hin1I	GRCGYC	1 cut(s)	1879
Hin6I	GCGC	1 cut(s)	991
HinP1I	GCGC	1 cut(s)	991
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HpaI	GTTAAC	1 cut(s)	166
HpaII	CCGG	3 cut(s)	1072, 1756, 1802
HphI	GGTGA	5 cut(s)	97, 1169, 1382, 1777, 1865
Hpy166II	GTNNAC	6 cut(s)	166, 445, 742, 1662, 1736, 1877
Hpy8I	GTNNAC	6 cut(s)	166, 445, 742, 1662, 1736, 1877
HpyAV	CCTTC	4 cut(s)	76, 235, 937, 1353
HpyCH4III	ACNGT	7 cut(s)	656, 672, 1180, 1237, 1666, 1874, 1906
HpyCH4IV	ACGT	1 cut(s)	1126
HpyF10VI	GCNNNNNNNGC	5 cut(s)	628, 1127, 1151, 1823, 1847
HpyF3I	CTNAG	5 cut(s)	449, 458, 626, 1483, 1611
HpySE526I	ACGT	1 cut(s)	1126
Hsp92I	GRCGYC	1 cut(s)	1879
HspAI	GCGC	1 cut(s)	991
Ksp22I	TGATCA	2 cut(s)	1276, 1381
KspAI	GTTAAC	1 cut(s)	166
LmnI	GCTCC	1 cut(s)	619
Lsp1109I	GCAGC	3 cut(s)	810, 1133, 1804
LweI	GCATC	4 cut(s)	102, 1065, 1230, 2067
MaeI	CTAG	6 cut(s)	440, 527, 548, 975, 1604, 1761
MaeII	ACGT	1 cut(s)	1126
MaeIII	GTNAC	6 cut(s)	417, 1157, 1370, 1439, 1783, 1853
MfeI	CAATTG	2 cut(s)	1065, 1707
MflI	RGATCY	3 cut(s)	44, 529, 557
MlsI	TGGCCA	1 cut(s)	282
MluNI	TGGCCA	1 cut(s)	282
MlyI	GAGTC	7 cut(s)	390, 469, 1154, 1385, 1498, 1850, 2077
MmeI	TCCRAC	2 cut(s)	40, 1165
Mox20I	TGGCCA	1 cut(s)	282
MscI	TGGCCA	1 cut(s)	282
MslI	CAYNNNNRTG	1 cut(s)	1295
Msp20I	TGGCCA	1 cut(s)	282
MspA1I	CMGCKG	3 cut(s)	1154, 1696, 1850
MspCI	CTTAAG	3 cut(s)	745, 832, 1727
MspI	CCGG	3 cut(s)	1072, 1756, 1802
MspR9I	CCNGG	1 cut(s)	1565
MunI	CAATTG	2 cut(s)	1065, 1707
MvaI	CCWGG	1 cut(s)	1565
MvnI	CGCG	1 cut(s)	1920
MwoI	GCNNNNNNNGC	5 cut(s)	628, 1127, 1151, 1823, 1847
NdeI	CATATG	1 cut(s)	16
NlaIV	GGNNCC	2 cut(s)	1149, 1845
NmuCI	GTSAC	4 cut(s)	1157, 1370, 1783, 1853
NsbI	TGCGCA	1 cut(s)	992
NspI	RCATGY	2 cut(s)	1601, 1944
NspV	TTCGAA	2 cut(s)	214, 864
PagI	TCATGA	1 cut(s)	1279
PaqCI	CACCTGC	1 cut(s)	1811
PciI	ACATGT	1 cut(s)	1940
PfeI	GAWTC	6 cut(s)	436, 866, 1086, 1172, 1456, 1866
PflFI	GACNNNGTC	1 cut(s)	1297
PflMI	CCANNNNNTGG	2 cut(s)	1418, 1997
PfoI	TCCNGGA	1 cut(s)	1563
PkrI	GCNGC	3 cut(s)	825, 1123, 1819
PleI	GAGTC	7 cut(s)	389, 468, 1154, 1384, 1498, 1850, 2077
PmaCI	CACGTG	1 cut(s)	1127
PmlI	CACGTG	1 cut(s)	1127
PpsI	GAGTC	7 cut(s)	389, 468, 1154, 1384, 1498, 1850, 2077
Ppu21I	YACGTR	1 cut(s)	1127
PpuMI	RGGWCCY	1 cut(s)	1342
PscI	ACATGT	1 cut(s)	1940
PshAI	GACNNNNGTC	1 cut(s)	704
Psp5II	RGGWCCY	1 cut(s)	1342
Psp6I	CCWGG	1 cut(s)	1563
PspCI	CACGTG	1 cut(s)	1127
PspGI	CCWGG	1 cut(s)	1563
PspN4I	GGNNCC	2 cut(s)	1149, 1845
PspPI	GGNCC	4 cut(s)	1148, 1342, 1844, 1935
PspPPI	RGGWCCY	1 cut(s)	1342
PstI	CTGCAG	2 cut(s)	1774, 1822
PsuI	RGATCY	3 cut(s)	44, 529, 557
PsyI	GACNNNGTC	1 cut(s)	1297
PvuII	CAGCTG	3 cut(s)	1154, 1696, 1850
RsaI	GTAC	3 cut(s)	513, 653, 1547
RsaNI	GTAC	3 cut(s)	512, 652, 1546
RseI	CAYNNNNRTG	1 cut(s)	1295
SatI	GCNGC	3 cut(s)	824, 1122, 1818
Sau96I	GGNCC	4 cut(s)	1148, 1342, 1844, 1935
SchI	GAGTC	7 cut(s)	390, 469, 1154, 1385, 1498, 1850, 2077
ScrFI	CCNGG	1 cut(s)	1565
SfaNI	GCATC	4 cut(s)	102, 1065, 1230, 2067
SfcI	CTRYAG	3 cut(s)	1225, 1770, 1818
SfuI	TTCGAA	2 cut(s)	214, 864
SinI	GGWCC	3 cut(s)	1148, 1342, 1844
SmiMI	CAYNNNNRTG	1 cut(s)	1295
SmlI	CTYRAG	6 cut(s)	745, 832, 1052, 1134, 1727, 1830
SmoI	CTYRAG	6 cut(s)	745, 832, 1052, 1134, 1727, 1830
SsiI	CCGC	7 cut(s)	115, 535, 1015, 1090, 1145, 1841, 1918
SspI	AATATT	1 cut(s)	1588
SspMI	CTAG	6 cut(s)	440, 527, 548, 975, 1604, 1761
StyD4I	CCNGG	1 cut(s)	1563
StyI	CCWWGG	1 cut(s)	889
TaaI	ACNGT	7 cut(s)	656, 672, 1180, 1237, 1666, 1874, 1906
TaiI	ACGT	1 cut(s)	1129
TaqI	TCGA	4 cut(s)	214, 716, 781, 864
TfiI	GAWTC	6 cut(s)	436, 866, 1086, 1172, 1456, 1866
TscAI	CASTG	3 cut(s)	204, 661, 1242
TseFI	GTSAC	4 cut(s)	1157, 1370, 1783, 1853
TseI	GCWGC	3 cut(s)	823, 1121, 1817
Tsp45I	GTSAC	4 cut(s)	1157, 1370, 1783, 1853
TspDTI	ATGAA	5 cut(s)	942, 1224, 1346, 1448, 1469
TspGWI	ACGGA	1 cut(s)	1023
TspRI	CASTG	3 cut(s)	204, 661, 1242
Tth111I	GACNNNGTC	1 cut(s)	1297
Van91I	CCANNNNNTGG	2 cut(s)	1418, 1997
Vha464I	CTTAAG	3 cut(s)	745, 832, 1727
VpaK11BI	GGWCC	3 cut(s)	1148, 1342, 1844
XapI	RAATTY	2 cut(s)	788, 911
XbaI	TCTAGA	2 cut(s)	526, 547
XceI	RCATGY	2 cut(s)	1601, 1944
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1531
XmiI	GTMKAC	1 cut(s)	1661
XspI	CTAG	6 cut(s)	440, 527, 548, 975, 1604, 1761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.