Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000069

Physical Location & Seq

Genomic Coordinates Forward (+)

37975540 .. 37980146

Gene Structure 4607 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57201

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2790 bp

ATGGCTGACGCTGTTGTTTCTGTTGTGGCCGAAGGGATCAAGCTGCTCGGAGACTACATCCTACAGCAAGCAAAATCCTCAAGTGGAGTCAGCTATCAAGTTAGGCTTGCACAAGTCGAGCTACACTTGATGCGTGGCTTCCTGAAAGATGCAGATTCAAGAACTGGGGAAGATGAAGTTGTACGCATTTGGGTAGAACTCATTAGAGATGCTGCTTATGATTTGGAAGATGTCATAGAATCTTTCGCCTTAAAATTGGCTTACAGGAGGAGAGGAGGTACTGTGAAGATTGCTCTGAAAAGGTTTGCCTGCATTTTCAGTGAAGGAGTTGATCTTCACAAGATTGGGTCGGAAATTGAGGATATTATGACCACACTATCTCATTTGAGGTCGAGTTTGCAAAGTTATAACATAAGACAAGTAAGTGCGGGTGAAAGTGTGGCTTCTGCTTTTAAGAGGCAACGAGATAGGAGGCTAACTTATGCTCATGAAGTCGAAAGTTATATTGTTGGGTTGGAGGAAAACACGGATAGACTGGTGAAAGAGTTGTTAAGAGATGGAAAGCGTCACCGTGTTGTTTCTATTTGGGGGATGGGCGGCTCTGGAAAAACCACTCTTGCAAAACAGGTTTTTCTTCAAAATGAAGTTAAGCGCCATTTTGTTTGTTTTGCTTGGGTCTGCATATCTCAACAATGGGAAGGAAAGGATGTATTGGAAGAGATTTTAATTAAACTCACTTCCCCAGCAACAGAGAAAAGGAAAGAAATTTCCAAAATGAAGAAGGATGAAATAGCAAGGGAGGTCTGTAGTATCCAAAGAGAAAAGGGATGTCTGGTGGTCCTTGATGACATATGGACTCAAGAGTCTTGGAATTCGATAAAAGCTGGATTCCCAATCAATCAGGAAACAGAAAGCCGGATATTACTCACTTCTCGGAAGAAAGAAGTCGCCTTGCTTGCTTCCAGAAATGACTATCTCCACCAGCCTCAGCCTCTAGATGCCATGCAAAGCTGGGAACTGTTTGAAAAGATAGCCATCTGTGGAAGCGACAAAACAGACTTGCAAATTTATGCAAAGAAGAGAGAATTAGGAGAGAAGATGCTTATACATTGTTCAGGTCTACCATTAGCCATCAGTGTGCTCGCTGGCCTTCTTAGTAGACGAGAGACGGTTGATGAGTGGAACACAGTACTTGGAAATGTTAATGTATACATAATGAGAGGCACAAATGTCCTTGAAAGAGAAATGACAAGTCAGGAGTGTGGTGTTTCAGGTGTCTTGGCATTGAGTTATGATGACTTACCATCTTACTTGAAACTCTGCTTTCTGTATTTAGCCCAATATCCTGAGGATCATGAGATACAGGTAACAAGATTGACTAAATTATGGATTGCAGAAGGGTTTATACCTTCAACATCAGAAATACATGGTTCAATGGAAGATGTATCATATGGTTGCCTAACTGAACTGGTGCAAAGATCTATGGTTCAAGTTGGAAAATATGGTTTTAGTGGGAAGGTGAAAAGTTGCCGTCTCCATGATCTGATGCGGGACTTGTGCTTGCAAAAGGCAAAAGAGGAGAACTTTCTTGGTATTGTTAACTTTTCTGTGGGTCCGGTATCTAATGCAACACTGATTGGTAAGGTTCGAAGACTTGCCTTCTATTTGAACGAAAATGTTAAATATGAGTTCAGTAGTGAGAATGGCCACATTAGGTCTCTATTATACTTTGCCCCAGAAAGGTTCTACCAAAAGTGGAACAAAAGAATAATACGATCAGTATTCAATGACTTCAATTTGATTAGAGTCTTGAAGTTTGAAAATATATGTAGGGAGTTTGAGTTACCAAAGACGATTGGGAATCTAGTCCACCTAAGGTTCCTGAGTCTGAAGAATAGTGCATTTCGTGGGTTGCCATCATCTGTATCTAATCTGGTACTTTTGCAAACTCTAGATCTGCGGGGTCATTATTTAGAAGATGGATCTTGTTTTGGGATTGAGTGGGACAGGGATACCAAAATCAGAAATGTGTTTTGGAATATGGAGCAACTGAGGCATTTGTATTTACCAGAATTGCAGAGTGTCAGGGGAAAACTGTCATTTGCAAGGTTGTTCAATTTGCAGACGTTGGTCAATGTTTCAATTGAGACATGCGATCTGAATGATCTTGTTCACTTAAGCAATCTGAAGAAACTATGCATAAGGCCGTTACTGTCTTGGCGGGCGGGTCGAACAAAATTGAAGGATGACCAGATTAAAATACTGGAGAAGCTACCCAACTTGAGGGTGCTTCACCTCAATCAGCTTCCTTTCGAATCAGAAACAATGGTTTTCTCCCAAGGAGGCTTTCCTCATCTGGAATTTCTTACCCTTGAACGCTTGTATCATTTGAAGGAGTGGAGGGTGGAGAAAGAAGCCATGCCTAGTCTTCAGAGATTGCGCATTTCATGGTGCTTCAACTTGGGGGCAGTTCCAGATGGGCTTCAGGAGATTACTACCCTCAAGGAATTAAAAATTTACGGGATGCCTAGTAGATTCTGCAGTAGGGTTGGGGAAGGAGGAAATGATTTCTTCAAAATCAAACATGTGCCTTCTCTTATAATCACAAATATTCAACCCGACTCCAAGAGAGACGATGAGCCAGAAATGGAGGAAGCAGCAGGCGCGTCCCAAATAGTAGTTACGGGTCCAGTCGGTGACTCTCATCAGGAATTAACTGTGGATGCGCCTCGCCCTGATGAGGAAACAGAGGAAATACGAGTTGCATCCCCTCCTCAGTTGAATCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0002230 GO:0002238 GO:0002239 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009615 GO:0009620 GO:0009626 GO:0009628 GO:0009637 GO:0009642 GO:0009646 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0012501 GO:0014070 GO:0016020 GO:0023052 GO:0030054 GO:0031347 GO:0032101 GO:0032870 GO:0033554 GO:0034050 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0043207 GO:0043900 GO:0044464 GO:0045087 GO:0046677 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071944 GO:0080134 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

929

Amino Acids

106.15

Weight (kDa)

7.06

Isoelectric Point (pI)

48.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	13 - 90	8e-17	Rx N-terminal domain
NB-ARC	PF00931	173 - 346	2.2e-38	NB-ARC domain
WHD_DRP	PF23559	448 - 520	3.9e-20	Disease resistance protein Winged helix domain
LRR_14	PF23598	593 - 735	1.2e-15	Leucine-rich repeat region
LRR_14	PF23598	746 - 839	4.7e-08	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G50180 AT1G53350 AT1G58390 AT1G58390 AT1G58400 AT1G58400 AT1G58400 AT1G58410 AT1G58410 AT1G58410 AT1G58410 AT1G58602 AT1G58602 AT1G58807 AT1G58807 AT1G58848 AT1G58848 AT1G59124 AT1G59124 AT1G59218 AT1G59218 AT1G59218 AT1G59620 AT1G59780 AT1G59780 AT5G35450 AT5G35450 AT5G43470 AT5G43470 AT5G43470 AT5G43470 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620
fragaria_vesca	FvH4_4g04072 FvH4_4g22931 FvH4_4g22931 FvH4_4g22940 FvH4_6g49940 FvH4_6g49940 FvH4_7g08100 FvH4_7g08870 FvH4_7g08870 FvH4_7g09280 FvH4_7g09290 FvH4_7g15190 FvH4_7g15200 FvH4_7g15240 FvH4_7g15240 FvH4_7g33440
malus_domestica	MD00G1174600.v1.1 MD01G1113700.v1.1 MD03G1071300.v1.1 MD04G1041500.v1.1 MD04G1238000.v1.1 MD07G1029000.v1.1 MD07G1092100.v1.1 MD07G1092300.v1.1 MD07G1092600.v1.1 MD12G1256300.v1.1 MD13G1128200.v1.1 MD13G1128400.v1.1 MD17G1268000.v1.1
prunus_persica	Prupe.1G041300_v2.0.a1 Prupe.1G041300_v2.0.a1 Prupe.1G042900_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043600_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G046700_v2.0.a1 Prupe.1G047700_v2.0.a1 Prupe.1G047900_v2.0.a1 Prupe.1G048000_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G049900_v2.0.a1 Prupe.1G051500_v2.0.a1 Prupe.1G051800_v2.0.a1 Prupe.1G051900_v2.0.a1 Prupe.1G052200_v2.0.a1 Prupe.1G194900_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117300_v2.0.a1 Prupe.2G117400_v2.0.a1 Prupe.2G117500_v2.0.a1 Prupe.2G117700_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G119900_v2.0.a1
pyrus_communis	pycom03g05750 pycom04g21110 pycom07g07530 pycom07g07590 pycom13g11110 pycom13g11140 pycom13g11160 pycom13g11170 pycom17g26680
rosa_chinensis	RchiOBHm_Chr1g0341231 RchiOBHm_Chr1g0344091 RchiOBHm_Chr1g0344161 RchiOBHm_Chr1g0345001 RchiOBHm_Chr1g0345351 RchiOBHm_Chr1g0345371 RchiOBHm_Chr1g0345391 RchiOBHm_Chr1g0345531 RchiOBHm_Chr1g0345551 RchiOBHm_Chr1g0345571 RchiOBHm_Chr1g0345581 RchiOBHm_Chr1g0345661 RchiOBHm_Chr1g0345691 RchiOBHm_Chr1g0345761 RchiOBHm_Chr1g0345791 RchiOBHm_Chr1g0345821 RchiOBHm_Chr1g0345911 RchiOBHm_Chr1g0345941 RchiOBHm_Chr1g0357611 RchiOBHm_Chr1g0357911 RchiOBHm_Chr1g0357921 RchiOBHm_Chr1g0357931 RchiOBHm_Chr1g0357971 RchiOBHm_Chr1g0358121 RchiOBHm_Chr1g0383491 RchiOBHm_Chr1g0383511 RchiOBHm_Chr1g0383521 RchiOBHm_Chr3g0480581 RchiOBHm_Chr4g0394341 RchiOBHm_Chr4g0394361 RchiOBHm_Chr4g0394411 RchiOBHm_Chr4g0394441 RchiOBHm_Chr4g0407681 RchiOBHm_Chr4g0429191 RchiOBHm_Chr4g0429201 RchiOBHm_Chr4g0429211 RchiOBHm_Chr4g0429221 RchiOBHm_Chr6g0265091
rosa_laevigata	RLG00000007088 RLG00000008700 RLG00000009190 RLG00000009702 RLG00000014210 RLG00000028829 RLG00000028833 RLG00000028837 RLG00000028838 RLG00000028921 RLG00000028926
rosa_multiflora	Rmu_co8366955.1_g000001 Rmu_co8394205.1_g000001 Rmu_sc0000019.1_g000001 Rmu_sc0000054.1_g000031 Rmu_sc0000054.1_g000033 Rmu_sc0000200.1_g000002 Rmu_sc0000200.1_g000007 Rmu_sc0000200.1_g000018 Rmu_sc0000200.1_g000020 Rmu_sc0000200.1_g000021 Rmu_sc0000251.1_g000012 Rmu_sc0000251.1_g000015 Rmu_sc0000251.1_g000028 Rmu_sc0000253.1_g000015 Rmu_sc0000255.1_g000045 Rmu_sc0000255.1_g000046 Rmu_sc0001292.1_g000013 Rmu_sc0001292.1_g000018 Rmu_sc0001292.1_g000028 Rmu_sc0001292.1_g000029 Rmu_sc0001349.1_g000006 Rmu_sc0001349.1_g000014 Rmu_sc0001582.1_g000006 Rmu_sc0001582.1_g000018 Rmu_sc0001582.1_g000020 Rmu_sc0001692.1_g000007 Rmu_sc0001692.1_g000024 Rmu_sc0001692.1_g000026 Rmu_sc0001692.1_g000029 Rmu_sc0001692.1_g000030 Rmu_sc0001835.1_g000006 Rmu_sc0001835.1_g000010 Rmu_sc0002071.1_g000005 Rmu_sc0002276.1_g000002 Rmu_sc0002276.1_g000009 Rmu_sc0002329.1_g000018 Rmu_sc0002329.1_g000023 Rmu_sc0002329.1_g000025 Rmu_sc0002523.1_g000005 Rmu_sc0003573.1_g000005 Rmu_sc0003573.1_g000006 Rmu_sc0004099.1_g000021 Rmu_sc0005812.1_g000009 Rmu_sc0006271.1_g000002 Rmu_sc0006287.1_g000038 Rmu_sc0006439.1_g000008 Rmu_sc0007456.1_g000004 Rmu_sc0007581.1_g000009 Rmu_sc0007849.1_g000014 Rmu_sc0008115.1_g000012 Rmu_sc0010521.1_g000004 Rmu_sc0012471.1_g000017 Rmu_sc0014762.1_g000001 Rmu_sc0015150.1_g000003 Rmu_sc0017221.1_g000001 Rmu_sc0017299.1_g000001 Rmu_sc0017299.1_g000002 Rmu_sc0021457.1_g000001 Rmu_sc0022067.1_g000001 Rmu_sc0033275.1_g000001 Rmu_ssc0000245.1_g000012 Rmu_ssc0000359.1_g000035 Rmu_ssc0000359.1_g000067 Rmu_ssc0000359.1_g000072 Rmu_ssc0000434.1_g000005 Rmu_ssc0000434.1_g000007
rosa_roxburghii	Rroxscaffold_4G00298420 Rroxscaffold_4G00298720 Rroxscaffold_4G00308990 Rroxscaffold_4G00309000 Rroxscaffold_4G00309010 Rroxscaffold_4G00309050 Rroxscaffold_4G00309070 Rroxscaffold_4G00309100 Rroxscaffold_4G00310030 Rroxscaffold_4G00310050 Rroxscaffold_4G00311880 Rroxscaffold_5G00339420 Rroxscaffold_5G00339450 Rroxscaffold_5G00344880 Rroxscaffold_5G00352270 Rroxscaffold_5G00362240 Rroxscaffold_5G00370840 Rroxscaffold_7G00202970
rosa_rugosa	Rorug01G0159100.1 Rorug01G0159200.1 Rorug01G0171700 Rorug01G0171900 Rorug01G0172000 Rorug01G0191700 Rorug01G0191800 Rorug01G0256900 Rorug01G0257000 Rorug01G0257100 Rorug03G0198000 Rorug03G0366300.1 Rorug03G0366400.1 Rorug03G0366500.1 Rorug04G0081200 Rorug04G0081200 Rorug04G0081200 Rorug04G0233700 Rorug04G0233800 Rorug04G0233800 Rorug06G0013300
rosa_samantha	Rh1CG138800 Rh1CG161300 Rh1CG173800 Rh1CG179800 Rh1CG180100 Rh1CG180500 Rh1CG180800 Rh1CG180900 Rh1CG194100 Rh1DG205100 Rh3AG236300 Rh4AG052000 Rh4AG052100 Rh4AG145900 Rh4AG289700 Rh4AG289800 Rh6AG136800 Rh6AG137300 Rh6BG133600 Rh6CG132000 Rh6CG134000 Rh6DG119300
rosa_wichuraiana	Rw0G003420 Rw1G015500 Rw1G016110 Rw1G016180 Rw1G016210 Rw1G016230 Rw1G016280 Rw1G016440 Rw1G016450 Rw1G016460 Rw1G016480 Rw1G017490 Rw1G024140 Rw1G024160 Rw3G022530 Rw4G004140 Rw4G004190 Rw4G011850 Rw6G011800

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	408, 2600
AasI	GACNNNNNNGTC	1 cut(s)	862
Acc16I	TGCGCA	1 cut(s)	2441
AccI	GTMKAC	3 cut(s)	1120, 1159, 1209
AccII	CGCG	1 cut(s)	2666
AciI	CCGC	6 cut(s)	428, 597, 1549, 1960, 2221, 2225
AclWI	GGATC	3 cut(s)	44, 1359, 1990
AcoI	YGGCCR	2 cut(s)	27, 1705
AcsI	RAATTY	5 cut(s)	765, 871, 1065, 2360, 2514
AcuI	CTGAAG	4 cut(s)	1910, 2207, 2414, 2468
AfaI	GTAC	4 cut(s)	183, 280, 1191, 1938
AfiI	CCNNNNNNNGG	3 cut(s)	1740, 2283, 2740
AflII	CTTAAG	1 cut(s)	2176
AflIII	ACRYGT	1 cut(s)	2584
AjuI	GAANNNNNNNTTGG	4 cut(s)	2017, 2049, 2331, 2363
AluBI	AGCT	7 cut(s)	43, 93, 121, 884, 1011, 2272, 2305
AluI	AGCT	7 cut(s)	43, 93, 121, 884, 1011, 2272, 2305
Alw21I	GWGCWC	1 cut(s)	1143
Alw26I	GTCTC	6 cut(s)	45, 1160, 1538, 1722, 2141, 2625
AlwI	GGATC	3 cut(s)	44, 1359, 1990
AoxI	GGCC	4 cut(s)	27, 1147, 1705, 2204
ApeKI	GCWGC	3 cut(s)	43, 212, 2657
ApoI	RAATTY	5 cut(s)	765, 871, 1065, 2360, 2514
AspLEI	GCGC	4 cut(s)	654, 2442, 2666, 2728
AspS9I	GGNCC	3 cut(s)	838, 1613, 2687
AsuHPI	GGTGA	6 cut(s)	443, 550, 560, 1531, 2285, 2708
AsuII	TTCGAA	2 cut(s)	1648, 2313
AvaII	GGWCC	3 cut(s)	838, 1613, 2687
AxyI	CCTNAGG	2 cut(s)	1347, 1874
BaeI	ACNNNNGTAYC	2 cut(s)	2366, 2399
BalI	TGGCCA	1 cut(s)	1707
BarI	GAAGNNNNNNTAC	2 cut(s)	1389, 1421
BbsI	GAAGAC	2 cut(s)	1657, 2420
Bbv12I	GWGCWC	1 cut(s)	1143
BbvCI	CCTCAGC	1 cut(s)	987
BbvI	GCAGC	3 cut(s)	30, 199, 2669
BccI	CCATC	8 cut(s)	551, 586, 1043, 1139, 1312, 1924, 1973, 2471
BceAI	ACGGC	2 cut(s)	1515, 2191
BciVI	GTATCC	2 cut(s)	821, 2005
BcoDI	GTCTC	6 cut(s)	45, 1160, 1538, 1722, 2141, 2625
BfaI	CTAG	5 cut(s)	995, 1865, 1952, 2424, 2529
BfmI	CTRYAG	3 cut(s)	62, 805, 2539
BfoI	RGCGCY	1 cut(s)	655
BfrI	CTTAAG	1 cut(s)	2176
BfuI	GTATCC	2 cut(s)	821, 2005
BglII	AGATCT	2 cut(s)	1478, 1954
BisI	GCNGC	4 cut(s)	44, 213, 598, 2658
BlsI	GCNGC	4 cut(s)	45, 214, 599, 2659
BmcAI	AGTACT	1 cut(s)	1191
Bme18I	GGWCC	3 cut(s)	838, 1613, 2687
BmgT120I	GGNCC	3 cut(s)	838, 1613, 2687
BmiI	GGNNCC	3 cut(s)	1614, 1880, 2688
BmrI	ACTGGG	1 cut(s)	174
BmsI	GCATC	9 cut(s)	120, 139, 199, 988, 1089, 1536, 2514, 2713, 2774
BmuI	ACTGGG	1 cut(s)	174
BoxI	GACNNNNGTC	1 cut(s)	2129
BpiI	GAAGAC	2 cut(s)	1657, 2420
BpmI	CTGGAG	1 cut(s)	2285
Bpu10I	CCTNAGC	1 cut(s)	987
Bpu14I	TTCGAA	2 cut(s)	1648, 2313
BpuEI	CTTGAG	4 cut(s)	64, 843, 2302, 2486
BsaBI	GATNNNNATC	1 cut(s)	1034
BsaI	GGTCTC	1 cut(s)	1722
BsaJI	CCNNGG	1 cut(s)	2338
BsaWI	WCCGGW	1 cut(s)	1615
BsaXI	ACNNNNNCTCC	6 cut(s)	262, 267, 292, 297, 1826, 1856
Bsc4I	CCNNNNNNNGG	3 cut(s)	1740, 2283, 2740
Bse1I	ACTGG	5 cut(s)	169, 540, 1473, 2268, 2690
Bse21I	CCTNAGG	2 cut(s)	1347, 1874
Bse8I	GATNNNNATC	1 cut(s)	1034
BseDI	CCNNGG	1 cut(s)	2338
BseGI	GGATG	9 cut(s)	57, 597, 712, 790, 833, 2251, 2529, 2728, 2765
BseJI	GATNNNNATC	1 cut(s)	1034
BseLI	CCNNNNNNNGG	3 cut(s)	1740, 2283, 2740
BseMII	CTCAG	5 cut(s)	1001, 1338, 1874, 2042, 2789
BseNI	ACTGG	5 cut(s)	169, 540, 1473, 2268, 2690
BseRI	GAGGAG	4 cut(s)	283, 288, 1592, 2763
BseXI	GCAGC	3 cut(s)	30, 199, 2669
BseYI	CCCAGC	2 cut(s)	742, 1011
Bsh1236I	CGCG	1 cut(s)	2666
BshFI	GGCC	4 cut(s)	29, 1149, 1707, 2206
BsiHKAI	GWGCWC	1 cut(s)	1143
BsiSI	CCGG	2 cut(s)	916, 1616
BslFI	GGGAC	3 cut(s)	1565, 2018, 2653
BslI	CCNNNNNNNGG	3 cut(s)	1740, 2283, 2740
BsmAI	GTCTC	6 cut(s)	45, 1160, 1538, 1722, 2141, 2625
BsmBI	CGTCTC	3 cut(s)	1160, 1538, 2625
BsmFI	GGGAC	3 cut(s)	1565, 2018, 2653
BsnI	GGCC	4 cut(s)	29, 1149, 1707, 2206
Bso31I	GGTCTC	1 cut(s)	1722
Bsp119I	TTCGAA	2 cut(s)	1648, 2313
Bsp1286I	GDGCHC	1 cut(s)	1143
BspACI	CCGC	6 cut(s)	428, 597, 1549, 1960, 2221, 2225
BspANI	GGCC	4 cut(s)	29, 1149, 1707, 2206
BspCNI	CTCAG	5 cut(s)	1000, 1339, 1875, 2043, 2788
BspFNI	CGCG	1 cut(s)	2666
BspHI	TCATGA	2 cut(s)	487, 1354
BspLI	GGNNCC	3 cut(s)	1614, 1880, 2688
BspMAI	CTGCAG	1 cut(s)	2543
BspPI	GGATC	3 cut(s)	44, 1359, 1990
BspT104I	TTCGAA	2 cut(s)	1648, 2313
BspTI	CTTAAG	1 cut(s)	2176
BspTNI	GGTCTC	1 cut(s)	1722
BsrI	ACTGG	5 cut(s)	169, 540, 1473, 2268, 2690
BssECI	CCNNGG	1 cut(s)	2338
BssNAI	GTATAC	1 cut(s)	1210
BssT1I	CCWWGG	1 cut(s)	2338
Bst1107I	GTATAC	1 cut(s)	1210
Bst4CI	ACNGT	8 cut(s)	283, 572, 1020, 1171, 1189, 2097, 2214, 2719
Bst6I	CTCTTC	2 cut(s)	711, 1073
BstAFI	CTTAAG	1 cut(s)	2176
BstBI	TTCGAA	2 cut(s)	1648, 2313
BstC8I	GCNNGC	9 cut(s)	69, 108, 310, 957, 1143, 1147, 1562, 2223, 2662
BstDEI	CTNAG	7 cut(s)	987, 1154, 1347, 1874, 1883, 2051, 2775
BstF5I	GGATG	9 cut(s)	57, 597, 712, 790, 833, 2251, 2529, 2728, 2765
BstFNI	CGCG	1 cut(s)	2666
BstH2I	RGCGCY	1 cut(s)	655
BstHHI	GCGC	4 cut(s)	654, 2442, 2666, 2728
BstMAI	GTCTC	6 cut(s)	45, 1160, 1538, 1722, 2141, 2625
BstMWI	GCNNNNNNNGC	3 cut(s)	956, 2053, 2663
BstNSI	RCATGY	2 cut(s)	2154, 2588
BstPAI	GACNNNNGTC	1 cut(s)	2129
BstSFI	CTRYAG	3 cut(s)	62, 805, 2539
BstUI	CGCG	1 cut(s)	2666
BstV1I	GCAGC	3 cut(s)	30, 199, 2669
BstV2I	GAAGAC	2 cut(s)	1657, 2420
BstX2I	RGATCY	3 cut(s)	1478, 1954, 1982
BstYI	RGATCY	3 cut(s)	1478, 1954, 1982
BstZ17I	GTATAC	1 cut(s)	1210
Bsu36I	CCTNAGG	2 cut(s)	1347, 1874
BsuI	GTATCC	2 cut(s)	821, 2005
BsuRI	GGCC	4 cut(s)	29, 1149, 1707, 2206
BtsCI	GGATG	9 cut(s)	57, 597, 712, 790, 833, 2251, 2529, 2728, 2765
BtsIMutI	CAGTG	3 cut(s)	325, 1141, 1631
Cac8I	GCNNGC	9 cut(s)	69, 108, 310, 957, 1143, 1147, 1562, 2223, 2662
CciI	TCATGA	2 cut(s)	487, 1354
CfoI	GCGC	4 cut(s)	654, 2442, 2666, 2728
Cfr13I	GGNCC	3 cut(s)	838, 1613, 2687
CseI	GACGC	3 cut(s)	17, 554, 2655
Csp6I	GTAC	4 cut(s)	182, 279, 1190, 1937
CviAII	CATG	9 cut(s)	488, 1003, 1355, 1427, 1538, 2151, 2419, 2448, 2585
CviQI	GTAC	4 cut(s)	182, 279, 1190, 1937
DdeI	CTNAG	7 cut(s)	987, 1154, 1347, 1874, 1883, 2051, 2775
DrdI	GACNNNNNNGTC	1 cut(s)	862
DseDI	GACNNNNNNGTC	1 cut(s)	862
EaeI	YGGCCR	2 cut(s)	27, 1705
Eam1104I	CTCTTC	2 cut(s)	711, 1073
EarI	CTCTTC	2 cut(s)	711, 1073
Eco130I	CCWWGG	1 cut(s)	2338
Eco31I	GGTCTC	1 cut(s)	1722
Eco47I	GGWCC	3 cut(s)	838, 1613, 2687
Eco57I	CTGAAG	4 cut(s)	1910, 2207, 2414, 2468
Eco81I	CCTNAGG	2 cut(s)	1347, 1874
EcoRI	GAATTC	1 cut(s)	871
EcoT14I	CCWWGG	1 cut(s)	2338
EcoT22I	ATGCAT	1 cut(s)	2201
ErhI	CCWWGG	1 cut(s)	2338
Esp3I	CGTCTC	3 cut(s)	1160, 1538, 2625
FaeI	CATG	9 cut(s)	491, 1006, 1358, 1430, 1541, 2154, 2422, 2451, 2588
FalI	AAGNNNNNCTT	4 cut(s)	90, 122, 427, 459
FaqI	GGGAC	3 cut(s)	1565, 2018, 2653
FatI	CATG	9 cut(s)	487, 1002, 1354, 1426, 1537, 2150, 2418, 2447, 2584
FauI	CCCGC	5 cut(s)	421, 1542, 1953, 2214, 2218
FauNDI	CATATG	2 cut(s)	851, 1450
FblI	GTMKAC	3 cut(s)	1120, 1159, 1209
Fnu4HI	GCNGC	4 cut(s)	44, 213, 598, 2658
FokI	GGATG	9 cut(s)	44, 604, 719, 797, 840, 2258, 2536, 2735, 2752
Fsp4HI	GCNGC	4 cut(s)	44, 213, 598, 2658
FspBI	CTAG	5 cut(s)	995, 1865, 1952, 2424, 2529
FspI	TGCGCA	1 cut(s)	2441
GlaI	GCGC	4 cut(s)	653, 2441, 2665, 2727
GluI	GCNGC	4 cut(s)	44, 213, 598, 2658
GsaI	CCCAGC	2 cut(s)	746, 1015
GsuI	CTGGAG	1 cut(s)	2285
HaeII	RGCGCY	1 cut(s)	655
HaeIII	GGCC	4 cut(s)	29, 1149, 1707, 2206
HapII	CCGG	2 cut(s)	916, 1616
HgaI	GACGC	3 cut(s)	17, 554, 2655
HhaI	GCGC	4 cut(s)	654, 2442, 2666, 2728
Hin1II	CATG	9 cut(s)	491, 1006, 1358, 1430, 1541, 2154, 2422, 2451, 2588
Hin6I	GCGC	4 cut(s)	652, 2440, 2664, 2726
HinP1I	GCGC	4 cut(s)	652, 2440, 2664, 2726
HincII	GTYRAC	1 cut(s)	1600
HindII	GTYRAC	1 cut(s)	1600
HpaI	GTTAAC	1 cut(s)	1600
HpaII	CCGG	2 cut(s)	916, 1616
HphI	GGTGA	6 cut(s)	443, 550, 560, 1531, 2285, 2708
Hpy166II	GTNNAC	6 cut(s)	1121, 1160, 1210, 1600, 1870, 2173
Hpy8I	GTNNAC	6 cut(s)	1121, 1160, 1210, 1600, 1870, 2173
HpyCH4III	ACNGT	8 cut(s)	283, 572, 1020, 1171, 1189, 2097, 2214, 2719
HpyCH4IV	ACGT	1 cut(s)	2126
HpyF10VI	GCNNNNNNNGC	3 cut(s)	956, 2053, 2663
HpyF3I	CTNAG	7 cut(s)	987, 1154, 1347, 1874, 1883, 2051, 2775
HpySE526I	ACGT	1 cut(s)	2126
Hsp92II	CATG	9 cut(s)	491, 1006, 1358, 1430, 1541, 2154, 2422, 2451, 2588
HspAI	GCGC	4 cut(s)	652, 2440, 2664, 2726
KspAI	GTTAAC	1 cut(s)	1600
LmnI	GCTCC	1 cut(s)	2044
Lsp1109I	GCAGC	3 cut(s)	30, 199, 2669
LweI	GCATC	9 cut(s)	120, 139, 199, 988, 1089, 1536, 2514, 2713, 2774
MaeI	CTAG	5 cut(s)	995, 1865, 1952, 2424, 2529
MaeII	ACGT	1 cut(s)	2126
MaeIII	GTNAC	6 cut(s)	566, 1366, 1842, 2208, 2680, 2696
MfeI	CAATTG	1 cut(s)	2142
MflI	RGATCY	3 cut(s)	1478, 1954, 1982
MhlI	GDGCHC	1 cut(s)	1143
MlsI	TGGCCA	1 cut(s)	1707
MluNI	TGGCCA	1 cut(s)	1707
MlyI	GAGTC	7 cut(s)	96, 850, 872, 1815, 1894, 2615, 2693
MmeI	TCCRAC	3 cut(s)	330, 495, 1474
Mox20I	TGGCCA	1 cut(s)	1707
Mph1103I	ATGCAT	1 cut(s)	2201
MscI	TGGCCA	1 cut(s)	1707
MslI	CAYNNNNRTG	1 cut(s)	1136
Msp20I	TGGCCA	1 cut(s)	1707
MspCI	CTTAAG	1 cut(s)	2176
MspI	CCGG	2 cut(s)	916, 1616
MunI	CAATTG	1 cut(s)	2142
MvnI	CGCG	1 cut(s)	2666
MwoI	GCNNNNNNNGC	3 cut(s)	956, 2053, 2663
NdeI	CATATG	2 cut(s)	851, 1450
NlaIII	CATG	9 cut(s)	491, 1006, 1358, 1430, 1541, 2154, 2422, 2451, 2588
NlaIV	GGNNCC	3 cut(s)	1614, 1880, 2688
NmuCI	GTSAC	2 cut(s)	566, 2696
NsbI	TGCGCA	1 cut(s)	2441
NsiI	ATGCAT	1 cut(s)	2201
NspI	RCATGY	2 cut(s)	2154, 2588
NspV	TTCGAA	2 cut(s)	1648, 2313
PacI	TTAATTAA	1 cut(s)	729
PagI	TCATGA	2 cut(s)	487, 1354
PciI	ACATGT	1 cut(s)	2584
PfeI	GAWTC	7 cut(s)	155, 239, 888, 1861, 2315, 2535, 2782
PkrI	GCNGC	4 cut(s)	45, 214, 599, 2659
PleI	GAGTC	7 cut(s)	95, 850, 871, 1814, 1893, 2615, 2693
PpsI	GAGTC	7 cut(s)	95, 850, 871, 1814, 1893, 2615, 2693
PscI	ACATGT	1 cut(s)	2584
PshAI	GACNNNNGTC	1 cut(s)	2129
PsiI	TTATAA	2 cut(s)	408, 2600
PspFI	CCCAGC	2 cut(s)	742, 1011
PspN4I	GGNNCC	3 cut(s)	1614, 1880, 2688
PspPI	GGNCC	3 cut(s)	838, 1613, 2687
PstI	CTGCAG	1 cut(s)	2543
PsuI	RGATCY	3 cut(s)	1478, 1954, 1982
RsaI	GTAC	4 cut(s)	183, 280, 1191, 1938
RsaNI	GTAC	4 cut(s)	182, 279, 1190, 1937
RseI	CAYNNNNRTG	1 cut(s)	1136
SatI	GCNGC	4 cut(s)	44, 213, 598, 2658
Sau96I	GGNCC	3 cut(s)	838, 1613, 2687
ScaI	AGTACT	1 cut(s)	1191
SchI	GAGTC	7 cut(s)	96, 850, 872, 1815, 1894, 2615, 2693
SduI	GDGCHC	1 cut(s)	1143
SfaNI	GCATC	9 cut(s)	120, 139, 199, 988, 1089, 1536, 2514, 2713, 2774
SfcI	CTRYAG	3 cut(s)	62, 805, 2539
SfuI	TTCGAA	2 cut(s)	1648, 2313
SinI	GGWCC	3 cut(s)	838, 1613, 2687
SmiMI	CAYNNNNRTG	1 cut(s)	1136
SmlI	CTYRAG	5 cut(s)	79, 858, 2176, 2281, 2501
SmoI	CTYRAG	5 cut(s)	79, 858, 2176, 2281, 2501
SsiI	CCGC	6 cut(s)	428, 597, 1549, 1960, 2221, 2225
SspI	AATATT	1 cut(s)	2611
SspMI	CTAG	5 cut(s)	995, 1865, 1952, 2424, 2529
StyI	CCWWGG	1 cut(s)	2338
TaaI	ACNGT	8 cut(s)	283, 572, 1020, 1171, 1189, 2097, 2214, 2719
TaiI	ACGT	1 cut(s)	2129
TaqI	TCGA	7 cut(s)	117, 392, 495, 875, 1648, 2230, 2313
TatI	WGTACW	1 cut(s)	1189
TauI	GCSGC	1 cut(s)	600
TfiI	GAWTC	7 cut(s)	155, 239, 888, 1861, 2315, 2535, 2782
TscAI	CASTG	3 cut(s)	325, 1141, 1638
TseFI	GTSAC	2 cut(s)	566, 2696
TseI	GCWGC	3 cut(s)	43, 212, 2657
Tsp45I	GTSAC	2 cut(s)	566, 2696
TspDTI	ATGAA	6 cut(s)	189, 504, 657, 791, 801, 2436
TspGWI	ACGGA	1 cut(s)	542
TspRI	CASTG	3 cut(s)	325, 1141, 1638
Vha464I	CTTAAG	1 cut(s)	2176
VpaK11BI	GGWCC	3 cut(s)	838, 1613, 2687
XapI	RAATTY	5 cut(s)	765, 871, 1065, 2360, 2514
XbaI	TCTAGA	2 cut(s)	994, 1951
XceI	RCATGY	2 cut(s)	2154, 2588
XmiI	GTMKAC	3 cut(s)	1120, 1159, 1209
XspI	CTAG	5 cut(s)	995, 1865, 1952, 2424, 2529
ZrmI	AGTACT	1 cut(s)	1191
Zsp2I	ATGCAT	1 cut(s)	2201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.