Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000069

Physical Location & Seq

Genomic Coordinates Reverse (-)

7850864 .. 7917429

Gene Structure 66566 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00339450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2850 bp

ATGGCTGAGGCTGTTGTTTCTTTTCTCGTGGAAAGAGTTGGTGACTACATCATTCAAGAAGGCAGTTCCTTGTCCGGAGTTCGCGATCAAGTGGAGCGTGCACATACAGACCTACTATTCATCAGGGGCTTCCTCAAAGATGCAGACACAAAGCTACGAGATAGTGAGGCAATACGCATTTTTGTTGCCAAAATTAGAGATGCTGCTTATGATTTGGAGGATGTCATTGAGACTTTTGTCTTGAAGGTGGATTCCAAGAGGAAACGAGGTGTAAAGAATGTTTTGAAGAGGCTGGGGTGCATCTTCATTGAAGGAGTTCGTCGTCACAAGATTGGGTCAGAAATTGGGGTAATTACTATCACGATTTCTGATTTGAAGCAGAACTTGCAAACTTATGGTATTAAGGAGATAAGGGATTCCTCTACTTCCCTCCAATTGTGTGAAGGACAACAACTACTGAGGCGAACTTACACTCATGTTATTGATCGTAATGTGGTCGGGCTAGAGGATTCCGTCCATGAATTGGTTGGGCATTTGGTGAAGGAAGAGCATCGCCACCGAGTTGTTTCTATTATTGGGATGGGCGGATCTGGGAAAACAACTATTGCTAAACAAGTTTATCATCACAAAGAGGTAACATACCATTTTGATTGTCTGGCTTGGGTTTGTATATCTCAACAATATCAAGTCAGGGATGTCTTGGAGAGGATTTATGTCAAACTTCTTTGCCCCACAAAAGAGGAGAGGGATGAAATTGCAAAATTGAAGGATGACGAAATACCAGGGAGGCTTTCTCGTCTCCAAAATGAAAAAAAATGTTTGATTGTCCTTGATGACATTTGGAAAAGAGAGACCTGGGACTTTTTGAAGGCTGCATTTGAATGCGATGAAGACTCAAAGAGCAGGATACTACTTACGACACGCAATGAACAAGTAGCTTCGCATGCCGATGAGAACGGTTTTCCCTACCGACCTCCACCACTGAATGAGTCTGAGAGTTGGAAGCTGTTTGAGAAGATTGCAATGAGTGGAAGGAAAGCTGGAATAGATGTGGAAGTTTACACGAAGATGGAAGAATTAGGAAAGGAGATGGTTCAACATTGTAGGGGTCTGCCACTAGCTGTCATTGTACTTGCTGGACTTCTTGCTAGGAAAAACACAATTAAAGATTGGGTAACCATAAGAGAAAATGTTGGTGTTTACATAAGTAGAGGCTTTGGCCTCCCGGAAGAAGAACATGCATATGTATCATGGGTGTTGGCGTTGAGTTATGATGACTTGCCGTATCACTTAAAACCTTGTTTCCTGTATTTAGGACATTTTCCCGAGGATCATGAGATCCGGATGAAGAGTTTGACAAGACTATGGATTGCAGAAGGTTTTCTTTCTTTGACAAAACAAAGACAAAGTTCAGGGGAAACAATGGAGGATGTGGCATACAATTGGTTGAATGAGTTGGTAGAAAGGTGTGTGATTCAAGTAGCAGAGAGAAGTTCAACTTTTGAGAATATTAAAACTTGTCGGATGCATGATCTTTTGCGAGATTTGTGCTTGTGGAAGGCGGAAGAGGAAAATTTTCTCCAAGTTGTCAAAGGTTCTCATAAAAATGAGGCACTGCATCCAGTTTCTTCTTCTTCTTCCATGGTAACTTATGTATCACCAATGGGTAAGATTCGAAGACTTGCCGTCTACTTGGATGAGAATGATGATAAATTGGTACCCTCACTTGGGGAAAGAGGTGGACACCTTAGGTCCTTGTTATATTTTGGCCCCAATGATTATTATTGGTTTCCTAAAAGGAAAGAATTAATACCTTCCATGTTCAAGGATTTCAAATTACTCAGAGCGTTGATGATTGAAGGTATGGATGATGGAGAAGTAAAAATAGAGCTGCCTAGAGAAATTGGAAACATGGTCCACTTGAGATTTACGAGTCTAAGGAGAAGTAATATAAAATCGTTTCCTCCGTTTCTAGGAAACTTGATTTGTTTGCGGACACTTGATTTCCGTGTTTCAAATGTTGACATGGTTATCCCAAATGTGATATGCAAGATGAATAAGTTGAGACATTTATACCTTCCATCGAGTTACTGGGCTAGAGGTAAACTGCAGCTATCTACTCTCGGTGATTTACAAACTTTAAATTCTGTTTCGAGTGGATATTGTGATTTGAATGATCTTGCTAAACTAGGCAATCTAAGGAAACTGAGAATAAGATTGTCATCTAGCCAATCGAAAAATCTGGAGAAAATCTTGGATGCGGCAGGCTGCGTGCTCAACGGTATTCGGTCCCTGCGGTTGGACAACGATGTTGGAGTGGAAAGCGGTGCAGAGGTTAGTCAAATAGTTGCAAGGTGCGGTCAAATATGCAAGTTGATGCTGTGGGGGCCCACACTAGAACTACCGAAAGAGTTCCACTCCTATTCAAACCTCACCAAGTTATTTTTGTCTGGATGTGCTCTCAAGGACGACCAAATGGCCGTACTAGAGAAGCTGCCCAACCTGAAAAGTCTTCAACTGTGGGATAATGTGTTTGAGGAAAATACAAAAGTATTGGTTTTCTCCGCTGGAAGCTTTCCTCGTCTTCAGTTTCTTCAGCTTTATGATTTGGAAGGAATAACCGAGTGGAGGGTGGAGGAAGGAGCCATGCCTTGTCTCTGCAAATTGGTCATTCATTATTGCGGAGAATTGAGTACGGTTCTAGATGGGCTGAGACGCCTTACTACCCTCAAGGAATTGAATATTGTGGGTATGCCTAAACTATTCTGTAGTAAGCTTGAGGAAGGAGGAGAAGACTTCCATAAAGTCCAACACATCCCTTCCCTTATAATCCAGAATCCGAGGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0002230 GO:0002238 GO:0002239 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009615 GO:0009620 GO:0009626 GO:0009628 GO:0009637 GO:0009642 GO:0009646 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0012501 GO:0014070 GO:0016020 GO:0023052 GO:0030054 GO:0031347 GO:0032101 GO:0032870 GO:0033554 GO:0034050 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0043207 GO:0043900 GO:0044464 GO:0045087 GO:0046677 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071944 GO:0080134 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

949

Amino Acids

108.53

Weight (kDa)

7.12

Isoelectric Point (pI)

44.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	5 - 90	1.8e-20	Rx N-terminal domain
NB-ARC	PF00931	169 - 344	4e-43	NB-ARC domain
WHD_DRP	PF23559	441 - 517	6.2e-20	Disease resistance protein Winged helix domain
LRR_14	PF23598	597 - 915	1.2e-36	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G50180 AT1G53350 AT1G58390 AT1G58390 AT1G58400 AT1G58400 AT1G58400 AT1G58410 AT1G58410 AT1G58410 AT1G58410 AT1G58602 AT1G58602 AT1G58807 AT1G58807 AT1G58848 AT1G58848 AT1G59124 AT1G59124 AT1G59218 AT1G59218 AT1G59218 AT1G59620 AT1G59780 AT1G59780 AT5G35450 AT5G35450 AT5G43470 AT5G43470 AT5G43470 AT5G43470 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620
fragaria_vesca	FvH4_4g04072 FvH4_4g22931 FvH4_4g22931 FvH4_4g22940 FvH4_6g49940 FvH4_6g49940 FvH4_7g08100 FvH4_7g08870 FvH4_7g08870 FvH4_7g09280 FvH4_7g09290 FvH4_7g15190 FvH4_7g15200 FvH4_7g15240 FvH4_7g15240 FvH4_7g33440
malus_domestica	MD00G1174600.v1.1 MD01G1113700.v1.1 MD03G1071300.v1.1 MD04G1041500.v1.1 MD04G1238000.v1.1 MD07G1029000.v1.1 MD07G1092100.v1.1 MD07G1092300.v1.1 MD07G1092600.v1.1 MD12G1256300.v1.1 MD13G1128200.v1.1 MD13G1128400.v1.1 MD17G1268000.v1.1
prunus_persica	Prupe.1G041300_v2.0.a1 Prupe.1G041300_v2.0.a1 Prupe.1G042900_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043600_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G046700_v2.0.a1 Prupe.1G047700_v2.0.a1 Prupe.1G047900_v2.0.a1 Prupe.1G048000_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G049900_v2.0.a1 Prupe.1G051500_v2.0.a1 Prupe.1G051800_v2.0.a1 Prupe.1G051900_v2.0.a1 Prupe.1G052200_v2.0.a1 Prupe.1G194900_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117300_v2.0.a1 Prupe.2G117400_v2.0.a1 Prupe.2G117500_v2.0.a1 Prupe.2G117700_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G119900_v2.0.a1
pyrus_communis	pycom03g05750 pycom04g21110 pycom07g07530 pycom07g07590 pycom13g11110 pycom13g11140 pycom13g11160 pycom13g11170 pycom17g26680
rosa_chinensis	RchiOBHm_Chr1g0341231 RchiOBHm_Chr1g0344091 RchiOBHm_Chr1g0344161 RchiOBHm_Chr1g0345001 RchiOBHm_Chr1g0345351 RchiOBHm_Chr1g0345371 RchiOBHm_Chr1g0345391 RchiOBHm_Chr1g0345531 RchiOBHm_Chr1g0345551 RchiOBHm_Chr1g0345571 RchiOBHm_Chr1g0345581 RchiOBHm_Chr1g0345661 RchiOBHm_Chr1g0345691 RchiOBHm_Chr1g0345761 RchiOBHm_Chr1g0345791 RchiOBHm_Chr1g0345821 RchiOBHm_Chr1g0345911 RchiOBHm_Chr1g0345941 RchiOBHm_Chr1g0357611 RchiOBHm_Chr1g0357911 RchiOBHm_Chr1g0357921 RchiOBHm_Chr1g0357931 RchiOBHm_Chr1g0357971 RchiOBHm_Chr1g0358121 RchiOBHm_Chr1g0383491 RchiOBHm_Chr1g0383511 RchiOBHm_Chr1g0383521 RchiOBHm_Chr3g0480581 RchiOBHm_Chr4g0394341 RchiOBHm_Chr4g0394361 RchiOBHm_Chr4g0394411 RchiOBHm_Chr4g0394441 RchiOBHm_Chr4g0407681 RchiOBHm_Chr4g0429191 RchiOBHm_Chr4g0429201 RchiOBHm_Chr4g0429211 RchiOBHm_Chr4g0429221 RchiOBHm_Chr6g0265091
rosa_laevigata	RLG00000007088 RLG00000008700 RLG00000009190 RLG00000009702 RLG00000014210 RLG00000028829 RLG00000028833 RLG00000028837 RLG00000028838 RLG00000028921 RLG00000028926
rosa_multiflora	Rmu_co8366955.1_g000001 Rmu_co8394205.1_g000001 Rmu_sc0000019.1_g000001 Rmu_sc0000054.1_g000031 Rmu_sc0000054.1_g000033 Rmu_sc0000200.1_g000002 Rmu_sc0000200.1_g000007 Rmu_sc0000200.1_g000018 Rmu_sc0000200.1_g000020 Rmu_sc0000200.1_g000021 Rmu_sc0000251.1_g000012 Rmu_sc0000251.1_g000015 Rmu_sc0000251.1_g000028 Rmu_sc0000253.1_g000015 Rmu_sc0000255.1_g000045 Rmu_sc0000255.1_g000046 Rmu_sc0001292.1_g000013 Rmu_sc0001292.1_g000018 Rmu_sc0001292.1_g000028 Rmu_sc0001292.1_g000029 Rmu_sc0001349.1_g000006 Rmu_sc0001349.1_g000014 Rmu_sc0001582.1_g000006 Rmu_sc0001582.1_g000018 Rmu_sc0001582.1_g000020 Rmu_sc0001692.1_g000007 Rmu_sc0001692.1_g000024 Rmu_sc0001692.1_g000026 Rmu_sc0001692.1_g000029 Rmu_sc0001692.1_g000030 Rmu_sc0001835.1_g000006 Rmu_sc0001835.1_g000010 Rmu_sc0002071.1_g000005 Rmu_sc0002276.1_g000002 Rmu_sc0002276.1_g000009 Rmu_sc0002329.1_g000018 Rmu_sc0002329.1_g000023 Rmu_sc0002329.1_g000025 Rmu_sc0002523.1_g000005 Rmu_sc0003573.1_g000005 Rmu_sc0003573.1_g000006 Rmu_sc0004099.1_g000021 Rmu_sc0005812.1_g000009 Rmu_sc0006271.1_g000002 Rmu_sc0006287.1_g000038 Rmu_sc0006439.1_g000008 Rmu_sc0007456.1_g000004 Rmu_sc0007581.1_g000009 Rmu_sc0007849.1_g000014 Rmu_sc0008115.1_g000012 Rmu_sc0010521.1_g000004 Rmu_sc0012471.1_g000017 Rmu_sc0014762.1_g000001 Rmu_sc0015150.1_g000003 Rmu_sc0017221.1_g000001 Rmu_sc0017299.1_g000001 Rmu_sc0017299.1_g000002 Rmu_sc0021457.1_g000001 Rmu_sc0022067.1_g000001 Rmu_sc0033275.1_g000001 Rmu_ssc0000245.1_g000012 Rmu_ssc0000359.1_g000035 Rmu_ssc0000359.1_g000067 Rmu_ssc0000359.1_g000072 Rmu_ssc0000434.1_g000005 Rmu_ssc0000434.1_g000007
rosa_roxburghii	Rroxscaffold_4G00298420 Rroxscaffold_4G00298720 Rroxscaffold_4G00308990 Rroxscaffold_4G00309000 Rroxscaffold_4G00309010 Rroxscaffold_4G00309050 Rroxscaffold_4G00309070 Rroxscaffold_4G00309100 Rroxscaffold_4G00310030 Rroxscaffold_4G00310050 Rroxscaffold_4G00311880 Rroxscaffold_5G00339420 Rroxscaffold_5G00339450 Rroxscaffold_5G00344880 Rroxscaffold_5G00352270 Rroxscaffold_5G00362240 Rroxscaffold_5G00370840 Rroxscaffold_7G00202970
rosa_rugosa	Rorug01G0159100.1 Rorug01G0159200.1 Rorug01G0171700 Rorug01G0171900 Rorug01G0172000 Rorug01G0191700 Rorug01G0191800 Rorug01G0256900 Rorug01G0257000 Rorug01G0257100 Rorug03G0198000 Rorug03G0366300.1 Rorug03G0366400.1 Rorug03G0366500.1 Rorug04G0081200 Rorug04G0081200 Rorug04G0081200 Rorug04G0233700 Rorug04G0233800 Rorug04G0233800 Rorug06G0013300
rosa_samantha	Rh1CG138800 Rh1CG161300 Rh1CG173800 Rh1CG179800 Rh1CG180100 Rh1CG180500 Rh1CG180800 Rh1CG180900 Rh1CG194100 Rh1DG205100 Rh3AG236300 Rh4AG052000 Rh4AG052100 Rh4AG145900 Rh4AG289700 Rh4AG289800 Rh6AG136800 Rh6AG137300 Rh6BG133600 Rh6CG132000 Rh6CG134000 Rh6DG119300
rosa_wichuraiana	Rw0G003420 Rw1G015500 Rw1G016110 Rw1G016180 Rw1G016210 Rw1G016230 Rw1G016280 Rw1G016440 Rw1G016450 Rw1G016460 Rw1G016480 Rw1G017490 Rw1G024140 Rw1G024160 Rw3G022530 Rw4G004140 Rw4G004190 Rw4G011850 Rw6G011800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2828
Acc65I	GGTACC	1 cut(s)	1717
AccB1I	GGYRCC	1 cut(s)	1717
AccB7I	CCANNNNNTGG	1 cut(s)	523
AccI	GTMKAC	1 cut(s)	1689
AccII	CGCG	1 cut(s)	84
AccIII	TCCGGA	2 cut(s)	74, 1341
AciI	CCGC	9 cut(s)	585, 1562, 1993, 2261, 2296, 2325, 2358, 2565, 2682
AclWI	GGATC	3 cut(s)	595, 1333, 1338
AcoI	YGGCCR	1 cut(s)	2478
AcsI	RAATTY	2 cut(s)	1573, 2143
AcuI	CTGAAG	2 cut(s)	2570, 2579
AcyI	GRCGYC	1 cut(s)	2716
AfaI	GTAC	4 cut(s)	1131, 1719, 2484, 2695
AfiI	CCNNNNNNNGG	6 cut(s)	523, 1727, 1728, 1973, 2299, 2628
AhdI	GACNNNNNGTC	1 cut(s)	1685
AjnI	CCWGG	2 cut(s)	781, 854
Alw21I	GWGCWC	3 cut(s)	103, 2277, 2461
Alw26I	GTCTC	6 cut(s)	224, 803, 845, 2059, 2660, 2707
Alw44I	GTGCAC	1 cut(s)	99
AlwI	GGATC	3 cut(s)	595, 1333, 1338
Ama87I	CYCGRG	1 cut(s)	1325
Aor13HI	TCCGGA	2 cut(s)	74, 1341
AoxI	GGCC	4 cut(s)	1219, 1768, 2387, 2478
ApaI	GGGCCC	1 cut(s)	2391
ApaLI	GTGCAC	1 cut(s)	99
ApeKI	GCWGC	6 cut(s)	203, 872, 1891, 2110, 2268, 2494
ApoI	RAATTY	2 cut(s)	1573, 2143
AseI	ATTAAT	1 cut(s)	1808
Asp700I	GAANNNNTTC	4 cut(s)	315, 1380, 1575, 2411
Asp718I	GGTACC	1 cut(s)	1717
AspS9I	GGNCC	6 cut(s)	1752, 1769, 1915, 2289, 2387, 2388
AsuC2I	CCSGG	1 cut(s)	1226
AsuHPI	GGTGA	5 cut(s)	53, 550, 1650, 2138, 2425
AsuII	TTCGAA	1 cut(s)	1675
AvaI	CYCGRG	1 cut(s)	1325
AvaII	GGWCC	3 cut(s)	1752, 1915, 2289
AxyI	CCTNAGG	1 cut(s)	1748
BaeGI	GKGCMC	2 cut(s)	103, 2391
BaeI	ACNNNNGTAYC	2 cut(s)	1638, 1671
BanI	GGYRCC	1 cut(s)	1717
BanII	GRGCYC	1 cut(s)	2391
BauI	CACGAG	1 cut(s)	26
BbsI	GAAGAC	5 cut(s)	897, 1684, 2504, 2576, 2799
Bbv12I	GWGCWC	3 cut(s)	103, 2277, 2461
BbvCI	CCTCAGC	1 cut(s)	6
BbvI	GCAGC	6 cut(s)	190, 859, 1878, 2122, 2255, 2481
BccI	CCATC	6 cut(s)	574, 1063, 1084, 1865, 2089, 2699
BceAI	ACGGC	3 cut(s)	1267, 1670, 2465
BcgI	CGANNNNNNTGC	2 cut(s)	1530, 1564
BciT130I	CCWGG	2 cut(s)	783, 856
BciVI	GTATCC	1 cut(s)	900
BcnI	CCSGG	1 cut(s)	1226
BcoDI	GTCTC	6 cut(s)	224, 803, 845, 2059, 2660, 2707
BfmI	CTRYAG	2 cut(s)	2108, 2767
BfuI	GTATCC	1 cut(s)	900
BisI	GCNGC	7 cut(s)	204, 873, 1892, 2111, 2262, 2269, 2495
BlsI	GCNGC	7 cut(s)	205, 874, 1893, 2112, 2263, 2270, 2496
Bme1390I	CCNGG	3 cut(s)	783, 856, 1226
Bme18I	GGWCC	3 cut(s)	1752, 1915, 2289
BmeRI	GACNNNNNGTC	1 cut(s)	1685
BmeT110I	CYCGRG	1 cut(s)	1325
BmgT120I	GGNCC	6 cut(s)	1752, 1769, 1915, 2289, 2387, 2388
BmiI	GGNNCC	6 cut(s)	1719, 1771, 2291, 2388, 2389, 2644
BmrFI	CCNGG	3 cut(s)	783, 856, 1226
BmrI	ACTGGG	1 cut(s)	2101
BmsI	GCATC	8 cut(s)	130, 190, 309, 559, 1515, 1627, 2248, 2367
BmuI	ACTGGG	1 cut(s)	2101
BoxI	GACNNNNGTC	1 cut(s)	236
BpiI	GAAGAC	5 cut(s)	897, 1684, 2504, 2576, 2799
BplI	GAGNNNNNCTC	4 cut(s)	778, 810, 2402, 2434
BpmI	CTGGAG	1 cut(s)	2264
Bpu10I	CCTNAGC	1 cut(s)	6
Bpu14I	TTCGAA	1 cut(s)	1675
BpuEI	CTTGAG	4 cut(s)	1942, 2447, 2714, 2798
BpuMI	CCSGG	1 cut(s)	1226
BsaBI	GATNNNNATC	1 cut(s)	2221
BsaHI	GRCGYC	1 cut(s)	2716
BsaI	GGTCTC	1 cut(s)	845
BsaJI	CCNNGG	5 cut(s)	782, 855, 1326, 1641, 2840
BsaWI	WCCGGW	2 cut(s)	74, 1341
Bsc4I	CCNNNNNNNGG	6 cut(s)	523, 1727, 1728, 1973, 2299, 2628
Bse1I	ACTGG	2 cut(s)	1622, 2096
Bse21I	CCTNAGG	1 cut(s)	1748
Bse3DI	GCAATG	2 cut(s)	931, 1029
Bse8I	GATNNNNATC	1 cut(s)	2221
BseAI	TCCGGA	2 cut(s)	74, 1341
BseBI	CCWGG	2 cut(s)	783, 856
BseDI	CCNNGG	5 cut(s)	782, 855, 1326, 1641, 2840
BseJI	GATNNNNATC	1 cut(s)	2221
BseLI	CCNNNNNNNGG	6 cut(s)	523, 1727, 1728, 1973, 2299, 2628
BseMI	GCAATG	2 cut(s)	931, 1029
BseMII	CTCAG	5 cut(s)	449, 984, 1855, 2198, 2702
BseNI	ACTGG	2 cut(s)	1622, 2096
BseRI	GAGGAG	2 cut(s)	755, 2802
BseSI	GKGCMC	2 cut(s)	103, 2391
BseXI	GCAGC	6 cut(s)	190, 859, 1878, 2122, 2255, 2481
BseYI	CCCAGC	1 cut(s)	292
BsgI	GTGCAG	1 cut(s)	2349
Bsh1236I	CGCG	1 cut(s)	84
BshFI	GGCC	4 cut(s)	1221, 1770, 2389, 2480
BshNI	GGYRCC	1 cut(s)	1717
BsiHKAI	GWGCWC	3 cut(s)	103, 2277, 2461
BsiHKCI	CYCGRG	1 cut(s)	1325
BsiSI	CCGG	3 cut(s)	75, 1226, 1342
BslFI	GGGAC	2 cut(s)	872, 2275
BslI	CCNNNNNNNGG	6 cut(s)	523, 1727, 1728, 1973, 2299, 2628
BsmAI	GTCTC	6 cut(s)	224, 803, 845, 2059, 2660, 2707
BsmBI	CGTCTC	2 cut(s)	803, 2707
BsmFI	GGGAC	2 cut(s)	872, 2275
BsmI	GAATGC	1 cut(s)	887
BsnI	GGCC	4 cut(s)	1221, 1770, 2389, 2480
Bso31I	GGTCTC	1 cut(s)	845
BsoBI	CYCGRG	1 cut(s)	1325
Bsp119I	TTCGAA	1 cut(s)	1675
Bsp120I	GGGCCC	1 cut(s)	2387
Bsp1286I	GDGCHC	4 cut(s)	103, 2277, 2391, 2461
Bsp13I	TCCGGA	2 cut(s)	74, 1341
Bsp143I	GATC	7 cut(s)	85, 484, 587, 1330, 1338, 1531, 2176
Bsp19I	CCATGG	1 cut(s)	1641
Bsp68I	TCGCGA	1 cut(s)	84
BspACI	CCGC	9 cut(s)	585, 1562, 1993, 2261, 2296, 2325, 2358, 2565, 2682
BspANI	GGCC	4 cut(s)	1221, 1770, 2389, 2480
BspCNI	CTCAG	5 cut(s)	450, 985, 1854, 2199, 2703
BspEI	TCCGGA	2 cut(s)	74, 1341
BspFNI	CGCG	1 cut(s)	84
BspHI	TCATGA	1 cut(s)	1333
BspLI	GGNNCC	6 cut(s)	1719, 1771, 2291, 2388, 2389, 2644
BspMAI	CTGCAG	1 cut(s)	2112
BspPI	GGATC	3 cut(s)	595, 1333, 1338
BspQI	GCTCTTC	1 cut(s)	540
BspT104I	TTCGAA	1 cut(s)	1675
BspT107I	GGYRCC	1 cut(s)	1717
BspTNI	GGTCTC	1 cut(s)	845
BsrDI	GCAATG	2 cut(s)	931, 1029
BsrI	ACTGG	2 cut(s)	1622, 2096
BssECI	CCNNGG	5 cut(s)	782, 855, 1326, 1641, 2840
BssMI	GATC	7 cut(s)	85, 484, 587, 1330, 1338, 1531, 2176
BssNI	GRCGYC	1 cut(s)	2716
BssSI	CACGAG	1 cut(s)	26
BssT1I	CCWWGG	1 cut(s)	1641
Bst2BI	CACGAG	1 cut(s)	26
Bst2UI	CCWGG	2 cut(s)	783, 856
Bst4CI	ACNGT	4 cut(s)	959, 2282, 2520, 2698
Bst6I	CTCTTC	4 cut(s)	281, 540, 1343, 1560
BstACI	GRCGYC	1 cut(s)	2716
BstAPI	GCANNNNNTGC	1 cut(s)	385
BstBI	TTCGAA	1 cut(s)	1675
BstC8I	GCNNGC	4 cut(s)	99, 945, 2266, 2273
BstDEI	CTNAG	9 cut(s)	6, 458, 993, 1748, 1841, 1937, 2198, 2207, 2711
BstDSI	CCRYGG	1 cut(s)	1641
BstEII	GGTNACC	1 cut(s)	1174
BstFNI	CGCG	1 cut(s)	84
BstKTI	GATC	7 cut(s)	88, 487, 590, 1333, 1341, 1534, 2179
BstMAI	GTCTC	6 cut(s)	224, 803, 845, 2059, 2660, 2707
BstMBI	GATC	7 cut(s)	85, 484, 587, 1330, 1338, 1531, 2176
BstMWI	GCNNNNNNNGC	3 cut(s)	385, 944, 2386
BstNI	CCWGG	2 cut(s)	783, 856
BstNSI	RCATGY	2 cut(s)	947, 1241
BstPAI	GACNNNNGTC	1 cut(s)	236
BstPI	GGTNACC	1 cut(s)	1174
BstSCI	CCNGG	3 cut(s)	781, 854, 1224
BstSFI	CTRYAG	2 cut(s)	2108, 2767
BstSLI	GKGCMC	2 cut(s)	103, 2391
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	6 cut(s)	190, 859, 1878, 2122, 2255, 2481
BstV2I	GAAGAC	5 cut(s)	897, 1684, 2504, 2576, 2799
BstX2I	RGATCY	2 cut(s)	587, 1338
BstYI	RGATCY	2 cut(s)	587, 1338
Bsu36I	CCTNAGG	1 cut(s)	1748
BsuI	GTATCC	1 cut(s)	900
BsuRI	GGCC	4 cut(s)	1221, 1770, 2389, 2480
BtgI	CCRYGG	1 cut(s)	1641
BtgZI	GCGATG	2 cut(s)	536, 900
BtsI	GCAGTG	1 cut(s)	1613
BtsIMutI	CAGTG	2 cut(s)	980, 1613
BtuMI	TCGCGA	1 cut(s)	84
Cac8I	GCNNGC	4 cut(s)	99, 945, 2266, 2273
CciI	TCATGA	1 cut(s)	1333
Cfr13I	GGNCC	6 cut(s)	1752, 1769, 1915, 2289, 2387, 2388
CseI	GACGC	1 cut(s)	2724
Csp6I	GTAC	4 cut(s)	1130, 1718, 2483, 2694
CviQI	GTAC	4 cut(s)	1130, 1718, 2483, 2694
DdeI	CTNAG	9 cut(s)	6, 458, 993, 1748, 1841, 1937, 2198, 2207, 2711
DpnI	GATC	7 cut(s)	87, 486, 589, 1332, 1340, 1533, 2178
DpnII	GATC	7 cut(s)	85, 484, 587, 1330, 1338, 1531, 2176
DraI	TTTAAA	1 cut(s)	2142
DriI	GACNNNNNGTC	1 cut(s)	1685
EaeI	YGGCCR	1 cut(s)	2478
Eam1104I	CTCTTC	4 cut(s)	281, 540, 1343, 1560
Eam1105I	GACNNNNNGTC	1 cut(s)	1685
EarI	CTCTTC	4 cut(s)	281, 540, 1343, 1560
EciI	GGCGGA	2 cut(s)	600, 1577
Eco130I	CCWWGG	1 cut(s)	1641
Eco24I	GRGCYC	1 cut(s)	2391
Eco31I	GGTCTC	1 cut(s)	845
Eco47I	GGWCC	3 cut(s)	1752, 1915, 2289
Eco57I	CTGAAG	2 cut(s)	2570, 2579
Eco81I	CCTNAGG	1 cut(s)	1748
Eco88I	CYCGRG	1 cut(s)	1325
Eco91I	GGTNACC	1 cut(s)	1174
EcoO109I	RGGNCCY	2 cut(s)	1752, 2387
EcoO65I	GGTNACC	1 cut(s)	1174
EcoRII	CCWGG	2 cut(s)	781, 854
EcoT14I	CCWWGG	1 cut(s)	1641
EcoT22I	ATGCAT	2 cut(s)	1243, 1530
EcoT38I	GRGCYC	1 cut(s)	2391
ErhI	CCWWGG	1 cut(s)	1641
Esp3I	CGTCTC	2 cut(s)	803, 2707
FalI	AAGNNNNNCTT	6 cut(s)	368, 400, 1368, 1400, 1483, 1515
FaqI	GGGAC	2 cut(s)	872, 2275
FauNDI	CATATG	1 cut(s)	1243
FblI	GTMKAC	1 cut(s)	1689
Fnu4HI	GCNGC	7 cut(s)	204, 873, 1892, 2111, 2262, 2269, 2495
FriOI	GRGCYC	1 cut(s)	2391
Fsp4HI	GCNGC	7 cut(s)	204, 873, 1892, 2111, 2262, 2269, 2495
GluI	GCNGC	7 cut(s)	204, 873, 1892, 2111, 2262, 2269, 2495
GsaI	CCCAGC	1 cut(s)	296
GsuI	CTGGAG	1 cut(s)	2264
HaeIII	GGCC	4 cut(s)	1221, 1770, 2389, 2480
HapII	CCGG	3 cut(s)	75, 1226, 1342
HgaI	GACGC	1 cut(s)	2724
Hin1I	GRCGYC	1 cut(s)	2716
HincII	GTYRAC	1 cut(s)	2023
HindII	GTYRAC	1 cut(s)	2023
HindIII	AAGCTT	2 cut(s)	2572, 2774
HinfI	GANTC	9 cut(s)	251, 416, 509, 893, 989, 1474, 1672, 1933, 2836
HpaII	CCGG	3 cut(s)	75, 1226, 1342
HphI	GGTGA	5 cut(s)	53, 550, 1650, 2138, 2425
Hpy166II	GTNNAC	8 cut(s)	101, 1060, 1201, 1690, 1742, 1918, 2023, 2105
Hpy188I	TCNGA	6 cut(s)	340, 370, 994, 1524, 1844, 2841
Hpy8I	GTNNAC	8 cut(s)	101, 1060, 1201, 1690, 1742, 1918, 2023, 2105
Hpy99I	CGWCG	1 cut(s)	324
HpyCH4III	ACNGT	4 cut(s)	959, 2282, 2520, 2698
HpyF10VI	GCNNNNNNNGC	3 cut(s)	385, 944, 2386
HpyF3I	CTNAG	9 cut(s)	6, 458, 993, 1748, 1841, 1937, 2198, 2207, 2711
Hsp92I	GRCGYC	1 cut(s)	2716
Kpn2I	TCCGGA	2 cut(s)	74, 1341
KpnI	GGTACC	1 cut(s)	1721
Kzo9I	GATC	7 cut(s)	85, 484, 587, 1330, 1338, 1531, 2176
LguI	GCTCTTC	1 cut(s)	540
LmnI	GCTCC	2 cut(s)	94, 2642
Lsp1109I	GCAGC	6 cut(s)	190, 859, 1878, 2122, 2255, 2481
LweI	GCATC	8 cut(s)	130, 190, 309, 559, 1515, 1627, 2248, 2367
MaeIII	GTNAC	6 cut(s)	41, 323, 634, 1174, 1645, 2087
MalI	GATC	7 cut(s)	87, 486, 589, 1332, 1340, 1533, 2178
MboI	GATC	7 cut(s)	85, 484, 587, 1330, 1338, 1531, 2176
MfeI	CAATTG	2 cut(s)	434, 1441
MflI	RGATCY	2 cut(s)	587, 1338
MhlI	GDGCHC	4 cut(s)	103, 2277, 2391, 2461
MlyI	GAGTC	3 cut(s)	887, 998, 1942
MmeI	TCCRAC	5 cut(s)	980, 1502, 2280, 2293, 2833
Mph1103I	ATGCAT	2 cut(s)	1243, 1530
MroI	TCCGGA	2 cut(s)	74, 1341
MroXI	GAANNNNTTC	4 cut(s)	315, 1380, 1575, 2411
MseI	TTAA	7 cut(s)	402, 1164, 1292, 1512, 1808, 2141, 2848
MslI	CAYNNNNRTG	5 cut(s)	880, 948, 1067, 1242, 1605
MspA1I	CMGCKG	1 cut(s)	2567
MspI	CCGG	3 cut(s)	75, 1226, 1342
MspR9I	CCNGG	3 cut(s)	783, 856, 1226
MunI	CAATTG	2 cut(s)	434, 1441
Mva1269I	GAATGC	1 cut(s)	887
MvaI	CCWGG	2 cut(s)	783, 856
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	3 cut(s)	385, 944, 2386
NciI	CCSGG	1 cut(s)	1226
NcoI	CCATGG	1 cut(s)	1641
NdeI	CATATG	1 cut(s)	1243
NdeII	GATC	7 cut(s)	85, 484, 587, 1330, 1338, 1531, 2176
NlaIV	GGNNCC	6 cut(s)	1719, 1771, 2291, 2388, 2389, 2644
NmuCI	GTSAC	2 cut(s)	41, 323
NruI	TCGCGA	1 cut(s)	84
NsiI	ATGCAT	2 cut(s)	1243, 1530
NspI	RCATGY	2 cut(s)	947, 1241
NspV	TTCGAA	1 cut(s)	1675
PaeI	GCATGC	1 cut(s)	947
PagI	TCATGA	1 cut(s)	1333
PciSI	GCTCTTC	1 cut(s)	540
PcsI	WCGNNNNNNNCGW	1 cut(s)	1964
PctI	GAATGC	1 cut(s)	887
PdmI	GAANNNNTTC	4 cut(s)	315, 1380, 1575, 2411
PfeI	GAWTC	6 cut(s)	251, 416, 509, 1474, 1672, 2836
PflMI	CCANNNNNTGG	1 cut(s)	523
PfoI	TCCNGGA	1 cut(s)	1224
PkrI	GCNGC	7 cut(s)	205, 874, 1893, 2112, 2263, 2270, 2496
PleI	GAGTC	3 cut(s)	887, 997, 1941
PpsI	GAGTC	3 cut(s)	887, 997, 1941
PpuMI	RGGWCCY	1 cut(s)	1752
PshAI	GACNNNNGTC	1 cut(s)	236
PshBI	ATTAAT	1 cut(s)	1808
PsiI	TTATAA	1 cut(s)	2828
Psp5II	RGGWCCY	1 cut(s)	1752
Psp6I	CCWGG	2 cut(s)	781, 854
PspEI	GGTNACC	1 cut(s)	1174
PspFI	CCCAGC	1 cut(s)	292
PspGI	CCWGG	2 cut(s)	781, 854
PspN4I	GGNNCC	6 cut(s)	1719, 1771, 2291, 2388, 2389, 2644
PspOMI	GGGCCC	1 cut(s)	2387
PspPI	GGNCC	6 cut(s)	1752, 1769, 1915, 2289, 2387, 2388
PspPPI	RGGWCCY	1 cut(s)	1752
PstI	CTGCAG	1 cut(s)	2112
PsuI	RGATCY	2 cut(s)	587, 1338
RruI	TCGCGA	1 cut(s)	84
RsaI	GTAC	4 cut(s)	1131, 1719, 2484, 2695
RsaNI	GTAC	4 cut(s)	1130, 1718, 2483, 2694
RseI	CAYNNNNRTG	5 cut(s)	880, 948, 1067, 1242, 1605
SapI	GCTCTTC	1 cut(s)	540
SaqAI	TTAA	7 cut(s)	402, 1164, 1292, 1512, 1808, 2141, 2848
SatI	GCNGC	7 cut(s)	204, 873, 1892, 2111, 2262, 2269, 2495
Sau3AI	GATC	7 cut(s)	85, 484, 587, 1330, 1338, 1531, 2176
Sau96I	GGNCC	6 cut(s)	1752, 1769, 1915, 2289, 2387, 2388
SchI	GAGTC	3 cut(s)	887, 998, 1942
ScrFI	CCNGG	3 cut(s)	783, 856, 1226
SduI	GDGCHC	4 cut(s)	103, 2277, 2391, 2461
SfaNI	GCATC	8 cut(s)	130, 190, 309, 559, 1515, 1627, 2248, 2367
SfcI	CTRYAG	2 cut(s)	2108, 2767
SfuI	TTCGAA	1 cut(s)	1675
SinI	GGWCC	3 cut(s)	1752, 1915, 2289
SmiMI	CAYNNNNRTG	5 cut(s)	880, 948, 1067, 1242, 1605
SmlI	CTYRAG	4 cut(s)	1921, 2462, 2729, 2777
SmoI	CTYRAG	4 cut(s)	1921, 2462, 2729, 2777
SphI	GCATGC	1 cut(s)	947
SsiI	CCGC	9 cut(s)	585, 1562, 1993, 2261, 2296, 2325, 2358, 2565, 2682
SspI	AATATT	2 cut(s)	1510, 2743
StyD4I	CCNGG	3 cut(s)	781, 854, 1224
StyI	CCWWGG	1 cut(s)	1641
TaaI	ACNGT	4 cut(s)	959, 2282, 2520, 2698
TaqI	TCGA	4 cut(s)	1675, 2084, 2153, 2234
TaqII	GACCGA	1 cut(s)	2277
TatI	WGTACW	1 cut(s)	1129
TauI	GCSGC	1 cut(s)	2264
TfiI	GAWTC	6 cut(s)	251, 416, 509, 1474, 1672, 2836
Tru1I	TTAA	7 cut(s)	402, 1164, 1292, 1512, 1808, 2141, 2848
Tru9I	TTAA	7 cut(s)	402, 1164, 1292, 1512, 1808, 2141, 2848
TscAI	CASTG	2 cut(s)	987, 1620
TseFI	GTSAC	2 cut(s)	41, 323
TseI	GCWGC	6 cut(s)	203, 872, 1891, 2110, 2268, 2494
Tsp45I	GTSAC	2 cut(s)	41, 323
TspGWI	ACGGA	3 cut(s)	502, 1956, 1997
TspRI	CASTG	2 cut(s)	987, 1620
Van91I	CCANNNNNTGG	1 cut(s)	523
VneI	GTGCAC	1 cut(s)	99
VpaK11BI	GGWCC	3 cut(s)	1752, 1915, 2289
VspI	ATTAAT	1 cut(s)	1808
XapI	RAATTY	2 cut(s)	1573, 2143
XbaI	TCTAGA	1 cut(s)	2701
XceI	RCATGY	2 cut(s)	947, 1241
XcmI	CCANNNNNNNNNTGG	2 cut(s)	524, 2088
XmiI	GTMKAC	1 cut(s)	1689
XmnI	GAANNNNTTC	4 cut(s)	315, 1380, 1575, 2411
Zsp2I	ATGCAT	2 cut(s)	1243, 1530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.