Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 732 |
| AarI | CACCTGC | 1 cut(s) | 967 |
| Acc36I | ACCTGC | 1 cut(s) | 967 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1169 |
| AccBSI | CCGCTC | 1 cut(s) | 64 |
| AciI | CCGC | 4 cut(s) | 64, 308, 818, 1367 |
| AclWI | GGATC | 4 cut(s) | 83, 173, 815, 828 |
| AcoI | YGGCCR | 1 cut(s) | 1435 |
| AcuI | CTGAAG | 1 cut(s) | 396 |
| AfaI | GTAC | 1 cut(s) | 1347 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 63, 332, 579, 1169 |
| AgsI | TTSAA | 4 cut(s) | 671, 679, 784, 1036 |
| AjnI | CCWGG | 3 cut(s) | 37, 652, 1339 |
| AluBI | AGCT | 6 cut(s) | 313, 500, 635, 787, 916, 1398 |
| AluI | AGCT | 6 cut(s) | 313, 500, 635, 787, 916, 1398 |
| Alw21I | GWGCWC | 1 cut(s) | 1002 |
| Alw44I | GTGCAC | 1 cut(s) | 998 |
| AlwI | GGATC | 4 cut(s) | 83, 173, 815, 828 |
| Ama87I | CYCGRG | 1 cut(s) | 1374 |
| AoxI | GGCC | 5 cut(s) | 44, 456, 650, 1193, 1435 |
| ApaLI | GTGCAC | 1 cut(s) | 998 |
| ApeKI | GCWGC | 3 cut(s) | 23, 1395, 1416 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 445 |
| AspLEI | GCGC | 2 cut(s) | 245, 1416 |
| AspS9I | GGNCC | 7 cut(s) | 70, 650, 682, 1014, 1193, 1202, 1265 |
| AsuHPI | GGTGA | 3 cut(s) | 227, 263, 464 |
| AvaI | CYCGRG | 1 cut(s) | 1374 |
| AvaII | GGWCC | 5 cut(s) | 70, 682, 1014, 1202, 1265 |
| AxyI | CCTNAGG | 2 cut(s) | 93, 1207 |
| BaeGI | GKGCMC | 1 cut(s) | 1002 |
| BamHI | GGATCC | 1 cut(s) | 820 |
| BbsI | GAAGAC | 1 cut(s) | 87 |
| Bbv12I | GWGCWC | 1 cut(s) | 1002 |
| BbvCI | CCTCAGC | 1 cut(s) | 327 |
| BbvI | GCAGC | 3 cut(s) | 10, 1407, 1428 |
| BccI | CCATC | 3 cut(s) | 242, 933, 1304 |
| BceAI | ACGGC | 1 cut(s) | 1422 |
| BciT130I | CCWGG | 3 cut(s) | 39, 654, 1341 |
| BfaI | CTAG | 3 cut(s) | 497, 603, 756 |
| BfmI | CTRYAG | 1 cut(s) | 48 |
| BfuAI | ACCTGC | 1 cut(s) | 967 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1028 |
| BisI | GCNGC | 3 cut(s) | 24, 1396, 1417 |
| BlsI | GCNGC | 3 cut(s) | 25, 1397, 1418 |
| Bme1390I | CCNGG | 3 cut(s) | 39, 654, 1341 |
| Bme18I | GGWCC | 5 cut(s) | 70, 682, 1014, 1202, 1265 |
| BmeT110I | CYCGRG | 1 cut(s) | 1374 |
| BmgT120I | GGNCC | 7 cut(s) | 70, 650, 682, 1014, 1193, 1202, 1265 |
| BmiI | GGNNCC | 6 cut(s) | 684, 704, 822, 1204, 1266, 1267 |
| BmrFI | CCNGG | 3 cut(s) | 39, 654, 1341 |
| BmrI | ACTGGG | 1 cut(s) | 1200 |
| BmsI | GCATC | 6 cut(s) | 22, 358, 380, 586, 1130, 1281 |
| BmuI | ACTGGG | 1 cut(s) | 1200 |
| BpiI | GAAGAC | 1 cut(s) | 87 |
| BpmI | CTGGAG | 2 cut(s) | 679, 1362 |
| Bpu10I | CCTNAGC | 1 cut(s) | 327 |
| BpuEI | CTTGAG | 2 cut(s) | 1080, 1384 |
| BsaJI | CCNNGG | 4 cut(s) | 57, 706, 1375, 1432 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 784, 814 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 63, 332, 579, 1169 |
| Bse1I | ACTGG | 3 cut(s) | 696, 1017, 1195 |
| Bse21I | CCTNAGG | 2 cut(s) | 93, 1207 |
| Bse3DI | GCAATG | 2 cut(s) | 516, 1426 |
| BseBI | CCWGG | 3 cut(s) | 39, 654, 1341 |
| BseDI | CCNNGG | 4 cut(s) | 57, 706, 1375, 1432 |
| BseGI | GGATG | 2 cut(s) | 205, 907 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 63, 332, 579, 1169 |
| BseMI | GCAATG | 2 cut(s) | 516, 1426 |
| BseMII | CTCAG | 5 cut(s) | 84, 341, 411, 866, 911 |
| BseNI | ACTGG | 3 cut(s) | 696, 1017, 1195 |
| BseRI | GAGGAG | 5 cut(s) | 74, 155, 203, 296, 838 |
| BseSI | GKGCMC | 1 cut(s) | 1002 |
| BseXI | GCAGC | 3 cut(s) | 10, 1407, 1428 |
| BsgI | GTGCAG | 2 cut(s) | 765, 1251 |
| BshFI | GGCC | 5 cut(s) | 46, 458, 652, 1195, 1437 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1002 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1374 |
| BsiSI | CCGG | 2 cut(s) | 27, 969 |
| BslFI | GGGAC | 4 cut(s) | 1188, 1201, 1278, 1357 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 63, 332, 579, 1169 |
| BsmFI | GGGAC | 4 cut(s) | 1188, 1201, 1278, 1357 |
| BsmI | GAATGC | 2 cut(s) | 357, 835 |
| BsnI | GGCC | 5 cut(s) | 46, 458, 652, 1195, 1437 |
| BsoBI | CYCGRG | 1 cut(s) | 1374 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1002 |
| Bsp143I | GATC | 8 cut(s) | 88, 178, 549, 820, 904, 936, 1102, 1251 |
| BspACI | CCGC | 4 cut(s) | 64, 308, 818, 1367 |
| BspANI | GGCC | 5 cut(s) | 46, 458, 652, 1195, 1437 |
| BspCNI | CTCAG | 5 cut(s) | 85, 340, 412, 865, 910 |
| BspHI | TCATGA | 1 cut(s) | 364 |
| BspLI | GGNNCC | 6 cut(s) | 684, 704, 822, 1204, 1266, 1267 |
| BspMI | ACCTGC | 1 cut(s) | 967 |
| BspPI | GGATC | 4 cut(s) | 83, 173, 815, 828 |
| BsrBI | CCGCTC | 1 cut(s) | 64 |
| BsrDI | GCAATG | 2 cut(s) | 516, 1426 |
| BsrI | ACTGG | 3 cut(s) | 696, 1017, 1195 |
| BssECI | CCNNGG | 4 cut(s) | 57, 706, 1375, 1432 |
| BssMI | GATC | 8 cut(s) | 88, 178, 549, 820, 904, 936, 1102, 1251 |
| Bst2UI | CCWGG | 3 cut(s) | 39, 654, 1341 |
| Bst4CI | ACNGT | 4 cut(s) | 675, 707, 808, 1433 |
| Bst6I | CTCTTC | 9 cut(s) | 105, 132, 153, 159, 165, 180, 189, 282, 372 |
| BstC8I | GCNNGC | 2 cut(s) | 570, 1279 |
| BstDEI | CTNAG | 7 cut(s) | 93, 327, 420, 504, 852, 897, 1207 |
| BstDSI | CCRYGG | 2 cut(s) | 706, 1432 |
| BstF5I | GGATG | 2 cut(s) | 205, 907 |
| BstHHI | GCGC | 2 cut(s) | 245, 1416 |
| BstKTI | GATC | 8 cut(s) | 91, 181, 552, 823, 907, 939, 1105, 1254 |
| BstMBI | GATC | 8 cut(s) | 88, 178, 549, 820, 904, 936, 1102, 1251 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 32, 506, 574, 1028, 1283, 1425, 1434 |
| BstNI | CCWGG | 3 cut(s) | 39, 654, 1341 |
| BstNSI | RCATGY | 2 cut(s) | 308, 744 |
| BstSCI | CCNGG | 3 cut(s) | 37, 652, 1339 |
| BstSFI | CTRYAG | 1 cut(s) | 48 |
| BstSLI | GKGCMC | 1 cut(s) | 1002 |
| BstV1I | GCAGC | 3 cut(s) | 10, 1407, 1428 |
| BstV2I | GAAGAC | 1 cut(s) | 87 |
| BstX2I | RGATCY | 2 cut(s) | 178, 820 |
| BstYI | RGATCY | 2 cut(s) | 178, 820 |
| Bsu36I | CCTNAGG | 2 cut(s) | 93, 1207 |
| BsuRI | GGCC | 5 cut(s) | 46, 458, 652, 1195, 1437 |
| BtgI | CCRYGG | 2 cut(s) | 706, 1432 |
| BtgZI | GCGATG | 2 cut(s) | 549, 1301 |
| BtsCI | GGATG | 2 cut(s) | 205, 907 |
| BtsI | GCAGTG | 1 cut(s) | 870 |
| BtsIMutI | CAGTG | 4 cut(s) | 870, 1024, 1041, 1247 |
| BveI | ACCTGC | 1 cut(s) | 967 |
| Cac8I | GCNNGC | 2 cut(s) | 570, 1279 |
| CciI | TCATGA | 1 cut(s) | 364 |
| CfoI | GCGC | 2 cut(s) | 245, 1416 |
| Cfr13I | GGNCC | 7 cut(s) | 70, 650, 682, 1014, 1193, 1202, 1265 |
| Csp6I | GTAC | 1 cut(s) | 1346 |
| CviQI | GTAC | 1 cut(s) | 1346 |
| DdeI | CTNAG | 7 cut(s) | 93, 327, 420, 504, 852, 897, 1207 |
| DpnI | GATC | 8 cut(s) | 90, 180, 551, 822, 906, 938, 1104, 1253 |
| DpnII | GATC | 8 cut(s) | 88, 178, 549, 820, 904, 936, 1102, 1251 |
| EaeI | YGGCCR | 1 cut(s) | 1435 |
| Eam1104I | CTCTTC | 9 cut(s) | 105, 132, 153, 159, 165, 180, 189, 282, 372 |
| EarI | CTCTTC | 9 cut(s) | 105, 132, 153, 159, 165, 180, 189, 282, 372 |
| EciI | GGCGGA | 1 cut(s) | 833 |
| Eco147I | AGGCCT | 1 cut(s) | 46 |
| Eco47I | GGWCC | 5 cut(s) | 70, 682, 1014, 1202, 1265 |
| Eco57I | CTGAAG | 1 cut(s) | 396 |
| Eco81I | CCTNAGG | 2 cut(s) | 93, 1207 |
| Eco88I | CYCGRG | 1 cut(s) | 1374 |
| EcoO109I | RGGNCCY | 2 cut(s) | 682, 1265 |
| EcoRII | CCWGG | 3 cut(s) | 37, 652, 1339 |
| EcoT22I | ATGCAT | 2 cut(s) | 373, 742 |
| FaqI | GGGAC | 4 cut(s) | 1188, 1201, 1278, 1357 |
| FauI | CCCGC | 1 cut(s) | 57 |
| FauNDI | CATATG | 1 cut(s) | 1198 |
| Fnu4HI | GCNGC | 3 cut(s) | 24, 1396, 1417 |
| FokI | GGATG | 2 cut(s) | 212, 914 |
| Fsp4HI | GCNGC | 3 cut(s) | 24, 1396, 1417 |
| FspBI | CTAG | 3 cut(s) | 497, 603, 756 |
| GlaI | GCGC | 2 cut(s) | 244, 1415 |
| GluI | GCNGC | 3 cut(s) | 24, 1396, 1417 |
| GsuI | CTGGAG | 2 cut(s) | 679, 1362 |
| HaeIII | GGCC | 5 cut(s) | 46, 458, 652, 1195, 1437 |
| HapII | CCGG | 2 cut(s) | 27, 969 |
| HhaI | GCGC | 2 cut(s) | 245, 1416 |
| Hin6I | GCGC | 2 cut(s) | 243, 1414 |
| HinP1I | GCGC | 2 cut(s) | 243, 1414 |
| HincII | GTYRAC | 1 cut(s) | 771 |
| HindII | GTYRAC | 1 cut(s) | 771 |
| HindIII | AAGCTT | 1 cut(s) | 785 |
| HinfI | GANTC | 6 cut(s) | 53, 224, 401, 446, 836, 877 |
| HpaII | CCGG | 2 cut(s) | 27, 969 |
| HphI | GGTGA | 3 cut(s) | 227, 263, 464 |
| Hpy166II | GTNNAC | 3 cut(s) | 70, 771, 1000 |
| Hpy188I | TCNGA | 6 cut(s) | 58, 340, 376, 485, 702, 1107 |
| Hpy188III | TCNNGA | 7 cut(s) | 92, 182, 365, 756, 874, 899, 1374 |
| Hpy8I | GTNNAC | 3 cut(s) | 70, 771, 1000 |
| HpyAV | CCTTC | 5 cut(s) | 36, 430, 673, 1021, 1404 |
| HpyCH4III | ACNGT | 4 cut(s) | 675, 707, 808, 1433 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 32, 506, 574, 1028, 1283, 1425, 1434 |
| HpyF3I | CTNAG | 7 cut(s) | 93, 327, 420, 504, 852, 897, 1207 |
| HspAI | GCGC | 2 cut(s) | 243, 1414 |
| KflI | GGGWCCC | 1 cut(s) | 1265 |
| Kzo9I | GATC | 8 cut(s) | 88, 178, 549, 820, 904, 936, 1102, 1251 |
| LmnI | GCTCC | 4 cut(s) | 61, 310, 805, 981 |
| Lsp1109I | GCAGC | 3 cut(s) | 10, 1407, 1428 |
| LweI | GCATC | 6 cut(s) | 22, 358, 380, 586, 1130, 1281 |
| MaeI | CTAG | 3 cut(s) | 497, 603, 756 |
| MaeIII | GTNAC | 5 cut(s) | 268, 415, 475, 637, 1445 |
| MalI | GATC | 8 cut(s) | 90, 180, 551, 822, 906, 938, 1104, 1253 |
| MbiI | CCGCTC | 1 cut(s) | 64 |
| MboI | GATC | 8 cut(s) | 88, 178, 549, 820, 904, 936, 1102, 1251 |
| MflI | RGATCY | 2 cut(s) | 178, 820 |
| MhlI | GDGCHC | 1 cut(s) | 1002 |
| MluCI | AATT | 5 cut(s) | 18, 533, 607, 1056, 1317 |
| MmeI | TCCRAC | 3 cut(s) | 680, 827, 1175 |
| Mph1103I | ATGCAT | 2 cut(s) | 373, 742 |
| MroXI | GAANNNNTTC | 1 cut(s) | 445 |
| MseI | TTAA | 4 cut(s) | 386, 536, 858, 1459 |
| MslI | CAYNNNNRTG | 2 cut(s) | 741, 1286 |
| MspI | CCGG | 2 cut(s) | 27, 969 |
| MspR9I | CCNGG | 3 cut(s) | 39, 654, 1341 |
| Mva1269I | GAATGC | 2 cut(s) | 357, 835 |
| MvaI | CCWGG | 3 cut(s) | 39, 654, 1341 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 32, 506, 574, 1028, 1283, 1425, 1434 |
| NdeI | CATATG | 1 cut(s) | 1198 |
| NdeII | GATC | 8 cut(s) | 88, 178, 549, 820, 904, 936, 1102, 1251 |
| NlaIV | GGNNCC | 6 cut(s) | 684, 704, 822, 1204, 1266, 1267 |
| NmuCI | GTSAC | 1 cut(s) | 415 |
| NsiI | ATGCAT | 2 cut(s) | 373, 742 |
| NspI | RCATGY | 2 cut(s) | 308, 744 |
| PagI | TCATGA | 1 cut(s) | 364 |
| PaqCI | CACCTGC | 1 cut(s) | 967 |
| PceI | AGGCCT | 1 cut(s) | 46 |
| PctI | GAATGC | 2 cut(s) | 357, 835 |
| PdmI | GAANNNNTTC | 1 cut(s) | 445 |
| PfeI | GAWTC | 6 cut(s) | 53, 224, 401, 446, 836, 877 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1169 |
| PkrI | GCNGC | 3 cut(s) | 25, 1397, 1418 |
| PpuMI | RGGWCCY | 2 cut(s) | 682, 1265 |
| PsiI | TTATAA | 1 cut(s) | 732 |
| Psp5II | RGGWCCY | 2 cut(s) | 682, 1265 |
| Psp6I | CCWGG | 3 cut(s) | 37, 652, 1339 |
| PspGI | CCWGG | 3 cut(s) | 37, 652, 1339 |
| PspN4I | GGNNCC | 6 cut(s) | 684, 704, 822, 1204, 1266, 1267 |
| PspPI | GGNCC | 7 cut(s) | 70, 650, 682, 1014, 1193, 1202, 1265 |
| PspPPI | RGGWCCY | 2 cut(s) | 682, 1265 |
| PsuI | RGATCY | 2 cut(s) | 178, 820 |
| RsaI | GTAC | 1 cut(s) | 1347 |
| RsaNI | GTAC | 1 cut(s) | 1346 |
| RseI | CAYNNNNRTG | 2 cut(s) | 741, 1286 |
| SaqAI | TTAA | 4 cut(s) | 386, 536, 858, 1459 |
| SatI | GCNGC | 3 cut(s) | 24, 1396, 1417 |
| Sau3AI | GATC | 8 cut(s) | 88, 178, 549, 820, 904, 936, 1102, 1251 |
| Sau96I | GGNCC | 7 cut(s) | 70, 650, 682, 1014, 1193, 1202, 1265 |
| ScrFI | CCNGG | 3 cut(s) | 39, 654, 1341 |
| SduI | GDGCHC | 1 cut(s) | 1002 |
| SfaNI | GCATC | 6 cut(s) | 22, 358, 380, 586, 1130, 1281 |
| SfcI | CTRYAG | 1 cut(s) | 48 |
| SinI | GGWCC | 5 cut(s) | 70, 682, 1014, 1202, 1265 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 741, 1286 |
| SmlI | CTYRAG | 2 cut(s) | 1095, 1399 |
| SmoI | CTYRAG | 2 cut(s) | 1095, 1399 |
| Sse9I | AATT | 5 cut(s) | 18, 533, 607, 1056, 1317 |
| SseBI | AGGCCT | 1 cut(s) | 46 |
| SsiI | CCGC | 4 cut(s) | 64, 308, 818, 1367 |
| SspMI | CTAG | 3 cut(s) | 497, 603, 756 |
| StuI | AGGCCT | 1 cut(s) | 46 |
| StyD4I | CCNGG | 3 cut(s) | 37, 652, 1339 |
| TaaI | ACNGT | 4 cut(s) | 675, 707, 808, 1433 |
| TaqI | TCGA | 1 cut(s) | 723 |
| TasI | AATT | 5 cut(s) | 18, 533, 607, 1056, 1317 |
| TatI | WGTACW | 1 cut(s) | 1345 |
| TfiI | GAWTC | 6 cut(s) | 53, 224, 401, 446, 836, 877 |
| Tru1I | TTAA | 4 cut(s) | 386, 536, 858, 1459 |
| Tru9I | TTAA | 4 cut(s) | 386, 536, 858, 1459 |
| TscAI | CASTG | 4 cut(s) | 870, 1024, 1048, 1254 |
| TseFI | GTSAC | 1 cut(s) | 415 |
| TseI | GCWGC | 3 cut(s) | 23, 1395, 1416 |
| Tsp45I | GTSAC | 1 cut(s) | 415 |
| TspRI | CASTG | 4 cut(s) | 870, 1024, 1048, 1254 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1169 |
| VneI | GTGCAC | 1 cut(s) | 998 |
| VpaK11BI | GGWCC | 5 cut(s) | 70, 682, 1014, 1202, 1265 |
| XbaI | TCTAGA | 1 cut(s) | 755 |
| XceI | RCATGY | 2 cut(s) | 308, 744 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 810 |
| XmnI | GAANNNNTTC | 1 cut(s) | 445 |
| XspI | CTAG | 3 cut(s) | 497, 603, 756 |
| Zsp2I | ATGCAT | 2 cut(s) | 373, 742 |