DNA-directed RNA polymerases I, II, and III subunit
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 503 |
| AarI | CACCTGC | 1 cut(s) | 551 |
| Acc16I | TGCGCA | 1 cut(s) | 344 |
| Acc36I | ACCTGC | 1 cut(s) | 551 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 179 |
| AciI | CCGC | 2 cut(s) | 367, 442 |
| AcuI | CTGAAG | 2 cut(s) | 317, 371 |
| AfaI | GTAC | 1 cut(s) | 279 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 179 |
| AflIII | ACRYGT | 1 cut(s) | 487 |
| AgsI | TTSAA | 3 cut(s) | 274, 295, 350 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 613 |
| AjnI | CCWGG | 1 cut(s) | 430 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 162, 194 |
| Alw26I | GTCTC | 1 cut(s) | 573 |
| ApeKI | GCWGC | 1 cut(s) | 557 |
| AspLEI | GCGC | 1 cut(s) | 345 |
| AspS9I | GGNCC | 1 cut(s) | 103 |
| AsuHPI | GGTGA | 1 cut(s) | 143 |
| AvaII | GGWCC | 1 cut(s) | 103 |
| BbsI | GAAGAC | 1 cut(s) | 323 |
| BbvI | GCAGC | 1 cut(s) | 569 |
| BccI | CCATC | 1 cut(s) | 374 |
| BciT130I | CCWGG | 1 cut(s) | 432 |
| BclI | TGATCA | 1 cut(s) | 142 |
| BcoDI | GTCTC | 1 cut(s) | 573 |
| BfaI | CTAG | 1 cut(s) | 327 |
| BfuAI | ACCTGC | 1 cut(s) | 551 |
| BisI | GCNGC | 1 cut(s) | 558 |
| BlsI | GCNGC | 1 cut(s) | 559 |
| Bme1390I | CCNGG | 1 cut(s) | 432 |
| Bme18I | GGWCC | 1 cut(s) | 103 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 613 |
| BmgT120I | GGNCC | 1 cut(s) | 103 |
| BmrFI | CCNGG | 1 cut(s) | 432 |
| BmsI | GCATC | 2 cut(s) | 46, 417 |
| BpiI | GAAGAC | 1 cut(s) | 323 |
| BpuEI | CTTGAG | 2 cut(s) | 389, 555 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 179 |
| BseBI | CCWGG | 1 cut(s) | 432 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 179 |
| BseMII | CTCAG | 1 cut(s) | 582 |
| BseRI | GAGGAG | 1 cut(s) | 477 |
| BseXI | GCAGC | 1 cut(s) | 569 |
| BslFI | GGGAC | 1 cut(s) | 35 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 179 |
| BsmAI | GTCTC | 1 cut(s) | 573 |
| BsmBI | CGTCTC | 1 cut(s) | 573 |
| BsmFI | GGGAC | 1 cut(s) | 35 |
| Bsp143I | GATC | 3 cut(s) | 16, 43, 142 |
| BspACI | CCGC | 2 cut(s) | 367, 442 |
| BspCNI | CTCAG | 1 cut(s) | 583 |
| BspHI | TCATGA | 1 cut(s) | 40 |
| BspMI | ACCTGC | 1 cut(s) | 551 |
| BssMI | GATC | 3 cut(s) | 16, 43, 142 |
| Bst2UI | CCWGG | 1 cut(s) | 432 |
| Bst4CI | ACNGT | 3 cut(s) | 604, 611, 634 |
| Bst6I | CTCTTC | 2 cut(s) | 119, 191 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 563 |
| BstC8I | GCNNGC | 1 cut(s) | 369 |
| BstDEI | CTNAG | 2 cut(s) | 244, 591 |
| BstHHI | GCGC | 1 cut(s) | 345 |
| BstKTI | GATC | 3 cut(s) | 19, 46, 145 |
| BstMAI | GTCTC | 1 cut(s) | 573 |
| BstMBI | GATC | 3 cut(s) | 16, 43, 142 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 563 |
| BstNI | CCWGG | 1 cut(s) | 432 |
| BstNSI | RCATGY | 1 cut(s) | 491 |
| BstSCI | CCNGG | 1 cut(s) | 430 |
| BstV1I | GCAGC | 1 cut(s) | 569 |
| BstV2I | GAAGAC | 1 cut(s) | 323 |
| BveI | ACCTGC | 1 cut(s) | 551 |
| Cac8I | GCNNGC | 1 cut(s) | 369 |
| CciI | TCATGA | 1 cut(s) | 40 |
| CfoI | GCGC | 1 cut(s) | 345 |
| Cfr13I | GGNCC | 1 cut(s) | 103 |
| CseI | GACGC | 1 cut(s) | 555 |
| Csp6I | GTAC | 1 cut(s) | 278 |
| CviAII | CATG | 7 cut(s) | 41, 52, 80, 91, 214, 322, 488 |
| CviJI | RGCY | 3 cut(s) | 320, 385, 627 |
| CviKI_1 | RGCY | 3 cut(s) | 320, 385, 627 |
| CviQI | GTAC | 1 cut(s) | 278 |
| DdeI | CTNAG | 2 cut(s) | 244, 591 |
| DpnI | GATC | 3 cut(s) | 18, 45, 144 |
| DpnII | GATC | 3 cut(s) | 16, 43, 142 |
| DraI | TTTAAA | 1 cut(s) | 70 |
| DriI | GACNNNNNGTC | 1 cut(s) | 613 |
| Eam1104I | CTCTTC | 2 cut(s) | 119, 191 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 613 |
| EarI | CTCTTC | 2 cut(s) | 119, 191 |
| Eco47I | GGWCC | 1 cut(s) | 103 |
| Eco57I | CTGAAG | 2 cut(s) | 317, 371 |
| EcoO109I | RGGNCCY | 1 cut(s) | 103 |
| EcoRII | CCWGG | 1 cut(s) | 430 |
| Esp3I | CGTCTC | 1 cut(s) | 573 |
| FaeI | CATG | 7 cut(s) | 44, 55, 83, 94, 217, 325, 491 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 267, 299 |
| FaqI | GGGAC | 1 cut(s) | 35 |
| FatI | CATG | 7 cut(s) | 40, 51, 79, 90, 213, 321, 487 |
| FauI | CCCGC | 1 cut(s) | 360 |
| FbaI | TGATCA | 1 cut(s) | 142 |
| Fnu4HI | GCNGC | 1 cut(s) | 558 |
| Fsp4HI | GCNGC | 1 cut(s) | 558 |
| FspBI | CTAG | 1 cut(s) | 327 |
| FspI | TGCGCA | 1 cut(s) | 344 |
| GlaI | GCGC | 1 cut(s) | 344 |
| GluI | GCNGC | 1 cut(s) | 558 |
| HgaI | GACGC | 1 cut(s) | 555 |
| HhaI | GCGC | 1 cut(s) | 345 |
| Hin1II | CATG | 7 cut(s) | 44, 55, 83, 94, 217, 325, 491 |
| Hin6I | GCGC | 1 cut(s) | 343 |
| HinP1I | GCGC | 1 cut(s) | 343 |
| HinfI | GANTC | 6 cut(s) | 137, 217, 265, 438, 587, 596 |
| HphI | GGTGA | 1 cut(s) | 143 |
| Hpy166II | GTNNAC | 1 cut(s) | 607 |
| Hpy188I | TCNGA | 5 cut(s) | 142, 147, 264, 336, 592 |
| Hpy188III | TCNNGA | 7 cut(s) | 20, 41, 187, 221, 287, 377, 389 |
| Hpy8I | GTNNAC | 1 cut(s) | 607 |
| HpyAV | CCTTC | 2 cut(s) | 114, 504 |
| HpyCH4III | ACNGT | 3 cut(s) | 604, 611, 634 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 37, 357 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 563 |
| HpyF3I | CTNAG | 2 cut(s) | 244, 591 |
| Hsp92II | CATG | 7 cut(s) | 44, 55, 83, 94, 217, 325, 491 |
| HspAI | GCGC | 1 cut(s) | 343 |
| Ksp22I | TGATCA | 1 cut(s) | 142 |
| Kzo9I | GATC | 3 cut(s) | 16, 43, 142 |
| LpnPI | CCDG | 8 cut(s) | 177, 206, 374, 390, 417, 437, 444, 546 |
| Lsp1109I | GCAGC | 1 cut(s) | 569 |
| LweI | GCATC | 2 cut(s) | 46, 417 |
| MaeI | CTAG | 1 cut(s) | 327 |
| MaeIII | GTNAC | 4 cut(s) | 131, 184, 200, 615 |
| MalI | GATC | 3 cut(s) | 18, 45, 144 |
| MboI | GATC | 3 cut(s) | 16, 43, 142 |
| MboII | GAAGA | 4 cut(s) | 136, 208, 307, 323 |
| MfeI | CAATTG | 1 cut(s) | 417 |
| MluCI | AATT | 4 cut(s) | 30, 410, 417, 621 |
| MlyI | GAGTC | 3 cut(s) | 146, 259, 581 |
| MnlI | CCTC | 8 cut(s) | 94, 122, 297, 413, 455, 460, 544, 586 |
| MseI | TTAA | 2 cut(s) | 69, 413 |
| MslI | CAYNNNNRTG | 3 cut(s) | 56, 191, 212 |
| MspR9I | CCNGG | 1 cut(s) | 432 |
| MunI | CAATTG | 1 cut(s) | 417 |
| MvaI | CCWGG | 1 cut(s) | 432 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 563 |
| NdeII | GATC | 3 cut(s) | 16, 43, 142 |
| NlaIII | CATG | 7 cut(s) | 44, 55, 83, 94, 217, 325, 491 |
| NmuCI | GTSAC | 3 cut(s) | 131, 184, 615 |
| NsbI | TGCGCA | 1 cut(s) | 344 |
| NspI | RCATGY | 1 cut(s) | 491 |
| PagI | TCATGA | 1 cut(s) | 40 |
| PaqCI | CACCTGC | 1 cut(s) | 551 |
| PciI | ACATGT | 1 cut(s) | 487 |
| PfeI | GAWTC | 3 cut(s) | 217, 438, 596 |
| PflFI | GACNNNGTC | 1 cut(s) | 58 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 179 |
| PkrI | GCNGC | 1 cut(s) | 559 |
| PleI | GAGTC | 3 cut(s) | 145, 259, 581 |
| PpsI | GAGTC | 3 cut(s) | 145, 259, 581 |
| PpuMI | RGGWCCY | 1 cut(s) | 103 |
| PscI | ACATGT | 1 cut(s) | 487 |
| PsiI | TTATAA | 1 cut(s) | 503 |
| Psp5II | RGGWCCY | 1 cut(s) | 103 |
| Psp6I | CCWGG | 1 cut(s) | 430 |
| PspGI | CCWGG | 1 cut(s) | 430 |
| PspPI | GGNCC | 1 cut(s) | 103 |
| PspPPI | RGGWCCY | 1 cut(s) | 103 |
| PsyI | GACNNNGTC | 1 cut(s) | 58 |
| RsaI | GTAC | 1 cut(s) | 279 |
| RsaNI | GTAC | 1 cut(s) | 278 |
| RseI | CAYNNNNRTG | 3 cut(s) | 56, 191, 212 |
| SaqAI | TTAA | 2 cut(s) | 69, 413 |
| SatI | GCNGC | 1 cut(s) | 558 |
| Sau3AI | GATC | 3 cut(s) | 16, 43, 142 |
| Sau96I | GGNCC | 1 cut(s) | 103 |
| SchI | GAGTC | 3 cut(s) | 146, 259, 581 |
| ScrFI | CCNGG | 1 cut(s) | 432 |
| SetI | ASST | 5 cut(s) | 108, 133, 426, 452, 565 |
| SfaNI | GCATC | 2 cut(s) | 46, 417 |
| SinI | GGWCC | 1 cut(s) | 103 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 56, 191, 212 |
| SmlI | CTYRAG | 2 cut(s) | 404, 570 |
| SmoI | CTYRAG | 2 cut(s) | 404, 570 |
| Sse9I | AATT | 4 cut(s) | 30, 410, 417, 621 |
| SsiI | CCGC | 2 cut(s) | 367, 442 |
| SspI | AATATT | 2 cut(s) | 353, 514 |
| SspMI | CTAG | 1 cut(s) | 327 |
| StyD4I | CCNGG | 1 cut(s) | 430 |
| TaaI | ACNGT | 3 cut(s) | 604, 611, 634 |
| TaqI | TCGA | 2 cut(s) | 286, 517 |
| TasI | AATT | 4 cut(s) | 30, 410, 417, 621 |
| TfiI | GAWTC | 3 cut(s) | 217, 438, 596 |
| Tru1I | TTAA | 2 cut(s) | 69, 413 |
| Tru9I | TTAA | 2 cut(s) | 69, 413 |
| TseFI | GTSAC | 3 cut(s) | 131, 184, 615 |
| TseI | GCWGC | 1 cut(s) | 557 |
| Tsp45I | GTSAC | 3 cut(s) | 131, 184, 615 |
| TspDTI | ATGAA | 3 cut(s) | 107, 209, 230 |
| Tth111I | GACNNNGTC | 1 cut(s) | 58 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 179 |
| VpaK11BI | GGWCC | 1 cut(s) | 103 |
| XceI | RCATGY | 1 cut(s) | 491 |
| XspI | CTAG | 1 cut(s) | 327 |