Rw1G024160

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
50412017 .. 50413873
1857 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G024160.1

Sequence Viewer

Length: 1020 bp
ATGCAAAGCTATGACATAAAGCAAGAGAAGGGGAATGAAGGTGCTACTTCTTCAATGAGGCAACGAGAACGCAGGCTAACCTATCCTCATGTTACTGAGCATGATGTTGTTGGGTTAGGGAACGACATAGAGATGTTAGCTACGCATTTGGTGGAAGAAAAAGCCCATCGAGTTGTTTCTATTTGGGGCATGGGCGGCTCGGGAAAGACCACTCTTGCAAAACAAATTTACAATCATAAGAAAGTCAAGTCTCATTTTGATTGTTTTGCTTGGGTGTGTATATCTCAAAAATGTGACGGTACAATAGTTATGAAAGAAATTTTCATTAAACTTAGCGGAGTGTCCGATGAGCAGAGAAAGGAAATTGCATATCTGAGTAATCTTGAAATAGCAGAGAGGCTGATGCTGTGCAATTTCCAACGACACAGAAAATGTTTGGTGGTGCTGGATGATATTTGGACTCTTGATGCATGGAACTCTTTTAAAGGTGGATTTTCAGTGGATGAGGAAACTGAGAGCCGCATATTATTGACCACTCGCAACAGAGAAGTAGCTTCACTTGCAAGGGCAAATAGCTTACTCTACGAATCTCAGGCACTAAGTGCAGATGAAAGCTGGAATTTGTTTAGGAAGATAGCATTCTTTGGAATGGATGATACAAGATGCAAAATTGACTTTACTTTGCTGTCCATTTACTTTACTTTTCAGATTCTCAAATTTATTCAAAGAAAGAAGAACATGGGAAAGAATATGCTTCAACATTGTGCACGTTTGCCATTAGCTATAATCGTGCTCGCAGGACTACTAGCTAGAAAAGACACAATTGATGAGTGGGAAACTGTGCATAAGAATGTTAATGTATATATAAGGAGAGGCACAGACCTTGAACGAGAATACAAAGGTAAAAAATATGGAGGTGCTTCATGGGTCTTGGCACTCAGTTATGACAACTTACCATATCGCTTAAAGCTATGCTTTTTGTACTGGCAAATTTTCCTGAAGACTATGAGATGCGGGTGA

Protein Analysis

339

Amino Acids

39.31

Weight (kDa)

9.07

Isoelectric Point (pI)

24.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 42 - 214 8.7e-40 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000069)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G10920 AT1G50180 AT1G53350 AT1G58390 AT1G58390 AT1G58400 AT1G58400 AT1G58400 AT1G58410 AT1G58410 AT1G58410 AT1G58410 AT1G58602 AT1G58602 AT1G58807 AT1G58807 AT1G58848 AT1G58848 AT1G59124 AT1G59124 AT1G59218 AT1G59218 AT1G59218 AT1G59620 AT1G59780 AT1G59780 AT5G35450 AT5G35450 AT5G43470 AT5G43470 AT5G43470 AT5G43470 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620 AT5G48620
fragaria_vesca FvH4_4g04072 FvH4_4g22931 FvH4_4g22931 FvH4_4g22940 FvH4_6g49940 FvH4_6g49940 FvH4_7g08100 FvH4_7g08870 FvH4_7g08870 FvH4_7g09280 FvH4_7g09290 FvH4_7g15190 FvH4_7g15200 FvH4_7g15240 FvH4_7g15240 FvH4_7g33440
malus_domestica MD00G1174600.v1.1 MD01G1113700.v1.1 MD03G1071300.v1.1 MD04G1041500.v1.1 MD04G1238000.v1.1 MD07G1029000.v1.1 MD07G1092100.v1.1 MD07G1092300.v1.1 MD07G1092600.v1.1 MD12G1256300.v1.1 MD13G1128200.v1.1 MD13G1128400.v1.1 MD17G1268000.v1.1
prunus_persica Prupe.1G041300_v2.0.a1 Prupe.1G041300_v2.0.a1 Prupe.1G042900_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043100_v2.0.a1 Prupe.1G043600_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G043700_v2.0.a1 Prupe.1G046700_v2.0.a1 Prupe.1G047700_v2.0.a1 Prupe.1G047900_v2.0.a1 Prupe.1G048000_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G048500_v2.0.a1 Prupe.1G049900_v2.0.a1 Prupe.1G051500_v2.0.a1 Prupe.1G051800_v2.0.a1 Prupe.1G051900_v2.0.a1 Prupe.1G052200_v2.0.a1 Prupe.1G194900_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217800_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.1G217900_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117200_v2.0.a1 Prupe.2G117300_v2.0.a1 Prupe.2G117400_v2.0.a1 Prupe.2G117500_v2.0.a1 Prupe.2G117700_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G118000_v2.0.a1 Prupe.2G119900_v2.0.a1
pyrus_communis pycom03g05750 pycom04g21110 pycom07g07530 pycom07g07590 pycom13g11110 pycom13g11140 pycom13g11160 pycom13g11170 pycom17g26680
rosa_chinensis RchiOBHm_Chr1g0341231 RchiOBHm_Chr1g0344091 RchiOBHm_Chr1g0344161 RchiOBHm_Chr1g0345001 RchiOBHm_Chr1g0345351 RchiOBHm_Chr1g0345371 RchiOBHm_Chr1g0345391 RchiOBHm_Chr1g0345531 RchiOBHm_Chr1g0345551 RchiOBHm_Chr1g0345571 RchiOBHm_Chr1g0345581 RchiOBHm_Chr1g0345661 RchiOBHm_Chr1g0345691 RchiOBHm_Chr1g0345761 RchiOBHm_Chr1g0345791 RchiOBHm_Chr1g0345821 RchiOBHm_Chr1g0345911 RchiOBHm_Chr1g0345941 RchiOBHm_Chr1g0357611 RchiOBHm_Chr1g0357911 RchiOBHm_Chr1g0357921 RchiOBHm_Chr1g0357931 RchiOBHm_Chr1g0357971 RchiOBHm_Chr1g0358121 RchiOBHm_Chr1g0383491 RchiOBHm_Chr1g0383511 RchiOBHm_Chr1g0383521 RchiOBHm_Chr3g0480581 RchiOBHm_Chr4g0394341 RchiOBHm_Chr4g0394361 RchiOBHm_Chr4g0394411 RchiOBHm_Chr4g0394441 RchiOBHm_Chr4g0407681 RchiOBHm_Chr4g0429191 RchiOBHm_Chr4g0429201 RchiOBHm_Chr4g0429211 RchiOBHm_Chr4g0429221 RchiOBHm_Chr6g0265091
rosa_laevigata RLG00000007088 RLG00000008700 RLG00000009190 RLG00000009702 RLG00000014210 RLG00000028829 RLG00000028833 RLG00000028837 RLG00000028838 RLG00000028921 RLG00000028926
rosa_multiflora Rmu_co8366955.1_g000001 Rmu_co8394205.1_g000001 Rmu_sc0000019.1_g000001 Rmu_sc0000054.1_g000031 Rmu_sc0000054.1_g000033 Rmu_sc0000200.1_g000002 Rmu_sc0000200.1_g000007 Rmu_sc0000200.1_g000018 Rmu_sc0000200.1_g000020 Rmu_sc0000200.1_g000021 Rmu_sc0000251.1_g000012 Rmu_sc0000251.1_g000015 Rmu_sc0000251.1_g000028 Rmu_sc0000253.1_g000015 Rmu_sc0000255.1_g000045 Rmu_sc0000255.1_g000046 Rmu_sc0001292.1_g000013 Rmu_sc0001292.1_g000018 Rmu_sc0001292.1_g000028 Rmu_sc0001292.1_g000029 Rmu_sc0001349.1_g000006 Rmu_sc0001349.1_g000014 Rmu_sc0001582.1_g000006 Rmu_sc0001582.1_g000018 Rmu_sc0001582.1_g000020 Rmu_sc0001692.1_g000007 Rmu_sc0001692.1_g000024 Rmu_sc0001692.1_g000026 Rmu_sc0001692.1_g000029 Rmu_sc0001692.1_g000030 Rmu_sc0001835.1_g000006 Rmu_sc0001835.1_g000010 Rmu_sc0002071.1_g000005 Rmu_sc0002276.1_g000002 Rmu_sc0002276.1_g000009 Rmu_sc0002329.1_g000018 Rmu_sc0002329.1_g000023 Rmu_sc0002329.1_g000025 Rmu_sc0002523.1_g000005 Rmu_sc0003573.1_g000005 Rmu_sc0003573.1_g000006 Rmu_sc0004099.1_g000021 Rmu_sc0005812.1_g000009 Rmu_sc0006271.1_g000002 Rmu_sc0006287.1_g000038 Rmu_sc0006439.1_g000008 Rmu_sc0007456.1_g000004 Rmu_sc0007581.1_g000009 Rmu_sc0007849.1_g000014 Rmu_sc0008115.1_g000012 Rmu_sc0010521.1_g000004 Rmu_sc0012471.1_g000017 Rmu_sc0014762.1_g000001 Rmu_sc0015150.1_g000003 Rmu_sc0017221.1_g000001 Rmu_sc0017299.1_g000001 Rmu_sc0017299.1_g000002 Rmu_sc0021457.1_g000001 Rmu_sc0022067.1_g000001 Rmu_sc0033275.1_g000001 Rmu_ssc0000245.1_g000012 Rmu_ssc0000359.1_g000035 Rmu_ssc0000359.1_g000067 Rmu_ssc0000359.1_g000072 Rmu_ssc0000434.1_g000005 Rmu_ssc0000434.1_g000007
rosa_roxburghii Rroxscaffold_4G00298420 Rroxscaffold_4G00298720 Rroxscaffold_4G00308990 Rroxscaffold_4G00309000 Rroxscaffold_4G00309010 Rroxscaffold_4G00309050 Rroxscaffold_4G00309070 Rroxscaffold_4G00309100 Rroxscaffold_4G00310030 Rroxscaffold_4G00310050 Rroxscaffold_4G00311880 Rroxscaffold_5G00339420 Rroxscaffold_5G00339450 Rroxscaffold_5G00344880 Rroxscaffold_5G00352270 Rroxscaffold_5G00362240 Rroxscaffold_5G00370840 Rroxscaffold_7G00202970
rosa_rugosa Rorug01G0159100.1 Rorug01G0159200.1 Rorug01G0171700 Rorug01G0171900 Rorug01G0172000 Rorug01G0191700 Rorug01G0191800 Rorug01G0256900 Rorug01G0257000 Rorug01G0257100 Rorug03G0198000 Rorug03G0366300.1 Rorug03G0366400.1 Rorug03G0366500.1 Rorug04G0081200 Rorug04G0081200 Rorug04G0081200 Rorug04G0233700 Rorug04G0233800 Rorug04G0233800 Rorug06G0013300
rosa_samantha Rh1CG138800 Rh1CG161300 Rh1CG173800 Rh1CG179800 Rh1CG180100 Rh1CG180500 Rh1CG180800 Rh1CG180900 Rh1CG194100 Rh1DG205100 Rh3AG236300 Rh4AG052000 Rh4AG052100 Rh4AG145900 Rh4AG289700 Rh4AG289800 Rh6AG136800 Rh6AG137300 Rh6BG133600 Rh6CG132000 Rh6CG134000 Rh6DG119300
rosa_wichuraiana Rw0G003420 Rw1G015500 Rw1G016110 Rw1G016180 Rw1G016210 Rw1G016230 Rw1G016280 Rw1G016440 Rw1G016450 Rw1G016460 Rw1G016480 Rw1G017490 Rw1G024140 Rw1G024160 Rw3G022530 Rw4G004140 Rw4G004190 Rw4G011850 Rw6G011800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 195, 336, 520, 1014
AcsI RAATTY 5 cut(s) 225, 318, 619, 716, 990
AcuI CTGAAG 1 cut(s) 1019
AdeI CACNNNGTG 1 cut(s) 602
AfaI GTAC 2 cut(s) 301, 983
AgsI TTSAA 5 cut(s) 54, 386, 725, 758, 887
AluBI AGCT 8 cut(s) 9, 140, 554, 576, 615, 782, 809, 970
AluI AGCT 8 cut(s) 9, 140, 554, 576, 615, 782, 809, 970
Alw21I GWGCWC 2 cut(s) 769, 795
Alw26I GTCTC 1 cut(s) 255
Alw44I GTGCAC 1 cut(s) 765
Ama87I CYCGRG 1 cut(s) 199
ApaLI GTGCAC 1 cut(s) 765
ApoI RAATTY 5 cut(s) 225, 318, 619, 716, 990
AvaI CYCGRG 1 cut(s) 199
BaeGI GKGCMC 1 cut(s) 769
BaeI ACNNNNGTAYC 2 cut(s) 291, 324
BbsI GAAGAC 1 cut(s) 1007
Bbv12I GWGCWC 2 cut(s) 769, 795
BccI CCATC 1 cut(s) 174
BcoDI GTCTC 1 cut(s) 255
BfaI CTAG 2 cut(s) 806, 810
BisI GCNGC 2 cut(s) 196, 520
BlsI GCNGC 2 cut(s) 197, 521
BmeT110I CYCGRG 1 cut(s) 199
BmsI GCATC 4 cut(s) 393, 457, 653, 1001
BpiI GAAGAC 1 cut(s) 1007
Bse1I ACTGG 1 cut(s) 989
BseGI GGATG 3 cut(s) 454, 508, 658
BseMII CTCAG 5 cut(s) 87, 365, 504, 605, 952
BseNI ACTGG 1 cut(s) 989
BseSI GKGCMC 1 cut(s) 769
BsgI GTGCAG 1 cut(s) 624
BsiHKAI GWGCWC 2 cut(s) 769, 795
BsiHKCI CYCGRG 1 cut(s) 199
BsmAI GTCTC 1 cut(s) 255
BsmI GAATGC 1 cut(s) 638
BsoBI CYCGRG 1 cut(s) 199
Bsp1286I GDGCHC 2 cut(s) 769, 795
BspACI CCGC 4 cut(s) 195, 336, 520, 1014
BspCNI CTCAG 5 cut(s) 88, 366, 505, 604, 951
BsrI ACTGG 1 cut(s) 989
Bst4CI ACNGT 2 cut(s) 299, 841
BstAPI GCANNNNNTGC 1 cut(s) 602
BstC8I GCNNGC 2 cut(s) 74, 795
BstDEI CTNAG 7 cut(s) 96, 332, 374, 513, 591, 599, 938
BstF5I GGATG 3 cut(s) 454, 508, 658
BstMAI GTCTC 1 cut(s) 255
BstMWI GCNNNNNNNGC 3 cut(s) 195, 560, 602
BstSLI GKGCMC 1 cut(s) 769
BstV2I GAAGAC 1 cut(s) 1007
BtsCI GGATG 3 cut(s) 454, 508, 658
BtsIMutI CAGTG 1 cut(s) 504
Cac8I GCNNGC 2 cut(s) 74, 795
Csp6I GTAC 2 cut(s) 300, 982
CviAII CATG 6 cut(s) 89, 101, 190, 471, 739, 924
CviQI GTAC 2 cut(s) 300, 982
DdeI CTNAG 7 cut(s) 96, 332, 374, 513, 591, 599, 938
DraI TTTAAA 1 cut(s) 484
DraIII CACNNNGTG 1 cut(s) 602
Eco57I CTGAAG 1 cut(s) 1019
Eco88I CYCGRG 1 cut(s) 199
EcoT22I ATGCAT 1 cut(s) 472
FaeI CATG 6 cut(s) 92, 104, 193, 474, 742, 927
FalI AAGNNNNNCTT 2 cut(s) 959, 991
FatI CATG 6 cut(s) 88, 100, 189, 470, 738, 923
FauI CCCGC 1 cut(s) 1007
Fnu4HI GCNGC 2 cut(s) 196, 520
FokI GGATG 3 cut(s) 461, 515, 665
Fsp4HI GCNGC 2 cut(s) 196, 520
FspBI CTAG 2 cut(s) 806, 810
GluI GCNGC 2 cut(s) 196, 520
Hin1II CATG 6 cut(s) 92, 104, 193, 474, 742, 927
HinfI GANTC 3 cut(s) 460, 587, 709
Hpy166II GTNNAC 1 cut(s) 767
Hpy188I TCNGA 3 cut(s) 346, 375, 708
Hpy188III TCNNGA 4 cut(s) 201, 383, 464, 997
Hpy8I GTNNAC 1 cut(s) 767
HpyAV CCTTC 2 cut(s) 22, 32
HpyCH4III ACNGT 2 cut(s) 299, 841
HpyCH4IV ACGT 1 cut(s) 769
HpyF10VI GCNNNNNNNGC 3 cut(s) 195, 560, 602
HpyF3I CTNAG 7 cut(s) 96, 332, 374, 513, 591, 599, 938
HpySE526I ACGT 1 cut(s) 769
Hsp92II CATG 6 cut(s) 92, 104, 193, 474, 742, 927
LpnPI CCDG 7 cut(s) 58, 431, 578, 601, 783, 970, 1010
LweI GCATC 4 cut(s) 393, 457, 653, 1001
MaeI CTAG 2 cut(s) 806, 810
MaeII ACGT 1 cut(s) 769
MaeIII GTNAC 2 cut(s) 91, 293
MboII GAAGA 5 cut(s) 42, 167, 643, 745, 1012
MfeI CAATTG 1 cut(s) 822
MhlI GDGCHC 2 cut(s) 769, 795
MluCI AATT 9 cut(s) 225, 318, 363, 412, 619, 669, 716, 822, 990
MlyI GAGTC 1 cut(s) 454
MmeI TCCRAC 1 cut(s) 442
MnlI CCTC 6 cut(s) 51, 96, 390, 499, 866, 908
Mph1103I ATGCAT 1 cut(s) 472
MseI TTAA 4 cut(s) 327, 483, 855, 965
MslI CAYNNNNRTG 2 cut(s) 131, 849
MunI CAATTG 1 cut(s) 822
Mva1269I GAATGC 1 cut(s) 638
MwoI GCNNNNNNNGC 3 cut(s) 195, 560, 602
NlaIII CATG 6 cut(s) 92, 104, 193, 474, 742, 927
NmuCI GTSAC 1 cut(s) 293
NsiI ATGCAT 1 cut(s) 472
PctI GAATGC 1 cut(s) 638
PfeI GAWTC 2 cut(s) 587, 709
PkrI GCNGC 2 cut(s) 197, 521
PleI GAGTC 1 cut(s) 454
PpsI GAGTC 1 cut(s) 454
RsaI GTAC 2 cut(s) 301, 983
RsaNI GTAC 2 cut(s) 300, 982
RseI CAYNNNNRTG 2 cut(s) 131, 849
SaqAI TTAA 4 cut(s) 327, 483, 855, 965
SatI GCNGC 2 cut(s) 196, 520
SchI GAGTC 1 cut(s) 454
SduI GDGCHC 2 cut(s) 769, 795
SfaNI GCATC 4 cut(s) 393, 457, 653, 1001
SmiMI CAYNNNNRTG 2 cut(s) 131, 849
Sse9I AATT 9 cut(s) 225, 318, 363, 412, 619, 669, 716, 822, 990
SsiI CCGC 4 cut(s) 195, 336, 520, 1014
SspMI CTAG 2 cut(s) 806, 810
TaaI ACNGT 2 cut(s) 299, 841
TaiI ACGT 1 cut(s) 772
TaqI TCGA 1 cut(s) 169
TasI AATT 9 cut(s) 225, 318, 363, 412, 619, 669, 716, 822, 990
TatI WGTACW 1 cut(s) 981
TauI GCSGC 2 cut(s) 198, 522
TfiI GAWTC 2 cut(s) 587, 709
Tru1I TTAA 4 cut(s) 327, 483, 855, 965
Tru9I TTAA 4 cut(s) 327, 483, 855, 965
TscAI CASTG 1 cut(s) 504
TseFI GTSAC 1 cut(s) 293
Tsp45I GTSAC 1 cut(s) 293
TspDTI ATGAA 5 cut(s) 51, 313, 326, 624, 912
TspRI CASTG 1 cut(s) 504
VneI GTGCAC 1 cut(s) 765
XapI RAATTY 5 cut(s) 225, 318, 619, 716, 990
XspI CTAG 2 cut(s) 806, 810
Zsp2I ATGCAT 1 cut(s) 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.