Rorug04G0081200

pentatricopeptide repeat-containing protein At1g12700, mitochondrial

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
12374324 .. 12446306
71983 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0081200.1

Sequence Viewer

Length: 1878 bp
ATGATGAGGGGAAGATCTGATCCAGCCCAAAGGAAGCGCGTGATCACCATTCTGTGTGTTTTGGCACTCTTTCTTGTTTTCCTGTATGGGTATTATGGTTCCCTCTTTGGCTCTCAAAGTCGTGGTGCATCAGCTTTAGAATATGGCAGTAGATCTTTGAGAAAGCTTGGTTCATCTTATTTGGGTGGGGATGATGATACCGATGGTAAGCTGGATGAATCTTCAACAAAGTATGGGCAGGAAGATGGAGATGATGATGTTACAGTGAAGAGCTTCCCGGTTTGTGATGATCGCCATTCGGAACTTATCCCTTGCTTGGACAGAAATCTCATATATCAAATGAGACTGAAGTTGGACCTGTCTTTGATGGAGCACTATGAGAGGCATTGTCCTTCTCCAGAAAGGCGATACAATTGCTTGATTCCTCCTCCAATAGGGTACAAGGTCCCAATCAAATGGCCCCAGAGCAGAGATGAAGTATGGAAAGCAAACATACCTCATACTCACCTTGCACATGAGAAATCCGACCAGAACTGGATGGTTGAAAAAGGTGACAAGATTAGTTTTCCTGGGGGAGGCACACATTTTCACTATGGAGCTGATAAGTATATTGCTTCAATTGCAAATATGCTCAACTTTACAAAGAACAATCTAAACAATGAAGGCAGGTTACGTACAGTTTTTGACGTTGGCTGTGGAGTTGCAAGTTTTGGAGGCTATCTTCTGTCATCTGATATTATAACAATGTCCTTAGCACCCAATGATGTGCATCAAAATCAAATCCAATTTGCTTTGGAAAGAGGAATTCCAGCATATCTTGGTGTTCTAGGGACCAAAAGGCTTCCTTACCCAAGCAGATCTTTTGAACTTGCTCACTGTTCCCGTTGTAGAATTGATTGGCTCCAAAGAGATGGGATCCTTCTTCTTGAGCTAGATAGGTTGCTCAGGCCAGGAGGCTACTTTGCGTACTCATCTCCAGAAGCATATGCACAGGATGAGGAAGATCTCAAAATATGGAAAGAGATGAGTGCCCTTGTGGAACGCATGTGTTGGAGAATAGCTGCAAAAAGGAACCAAACTGTCATTTGGCAGAAACCACTAACAAATGACTGTTATATGCAAAGAGAACCTGGCACTCAACCTCCTCTCTGCCGATCTGATGATGATCCAGATGCAATCTGGGGTGTGCCAATGGAAGCTTGCATCTCACCGTACTCTGATCATGACCATAGAGAAAAGGGGAGTGGATTGGCTCCCTGGCCAGCTAGATTGACAACTCCTCCTCCTCGACTTGCTGATTTTGGCTATTCAAATGAAATGTTTGAAAAGGATATGGAACTTTGGCGCCATCGAGTTGAGAATTATTGGAATCTCTTGAGTCCAAAGATTGAATCAAACACTTTGAGGAATGTGATGGATATGAAAGCACACATGGGATCATTTGCAGCTGCTCTGAAGGACAAAGATGTTTGGGTGATGAATGTCGTCCCTGAAGATGGACCAAACACACTAAAGCTGATATACGACAGAGGCCTTATAGGCAGTATTCACAGCTGGTGTGAAGCCTATTCAACATACCCCCGTACTTATGATTTACTCCATGCTTGGATTGTCTTCTCTGACTTGGAAAAGAAAGAATGCAGTGCTGAGGATCTGTTGCTTGAGATGGATCGCATACTCAGGCCAACTGGATTTATAATTATCCGTGACAAACAGTCAGTGGTTGATTTAGTTAAGAAATATCTACCAGCACTGCACTGGGAAGTAGTGGCACAAACCGACTCCAGTTCAGATTCCGACCAGGACGGAGATGACGTTGTACTTATAATCCAAAAGAAAATATGGCTGACAAGTGACAGCCTCAGGGATTCAGAATAG

Protein Analysis

625

Amino Acids

71.4

Weight (kDa)

5.65

Isoelectric Point (pI)

43.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_29 PF03141 101 - 612 7.4e-230 Putative S-adenosyl-L-methionine-dependent methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000021)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12700 AT1G12700 AT1G12700 AT1G62680 AT1G62680 AT1G62720 AT1G63230 AT1G63630 AT1G63630 AT1G64583 AT1G64583 AT3G16710 AT3G16710 AT5G16640 AT5G41170 AT5G41170
fragaria_vesca FvH4_2g40320 FvH4_3g13950 FvH4_3g31580 FvH4_3g31590 FvH4_3g33650 FvH4_3g33650 FvH4_3g33650 FvH4_3g35200 FvH4_3g36280 FvH4_3g37111 FvH4_3g37480 FvH4_3g37481 FvH4_3g38020 FvH4_3g38070 FvH4_3g38471 FvH4_3g38472 FvH4_3g38590 FvH4_3g38590 FvH4_3g38590 FvH4_3g38931 FvH4_3g38940 FvH4_3g38940 FvH4_3g39650 FvH4_3g39890 FvH4_3g39940 FvH4_3g40100 FvH4_3g40130 FvH4_3g40940 FvH4_3g40940 FvH4_3g40940 FvH4_3g41340 FvH4_3g41820 FvH4_3g42120 FvH4_3g42121 FvH4_3g42430 FvH4_3g42600 FvH4_3g42700 FvH4_3g43150 FvH4_3g43170 FvH4_3g43330 FvH4_3g44300 FvH4_4g22270 FvH4_4g22280 FvH4_5g09470 FvH4_6g52550
malus_domestica MD03G1099700.v1.1 MD03G1101000.v1.1 MD03G1103400.v1.1 MD03G1103500.v1.1 MD03G1103700.v1.1 MD03G1105300.v1.1 MD03G1106000.v1.1 MD03G1106100.v1.1 MD03G1107100.v1.1 MD03G1108100.v1.1 MD03G1113100.v1.1 MD03G1113300.v1.1 MD03G1113400.v1.1 MD03G1113500.v1.1 MD03G1113600.v1.1 MD03G1113700.v1.1 MD03G1113800.v1.1 MD04G1015600.v1.1 MD11G1115600.v1.1 MD11G1117400.v1.1 MD11G1117500.v1.1 MD11G1122400.v1.1 MD11G1126400.v1.1 MD11G1126500.v1.1 MD11G1128300.v1.1 MD11G1128400.v1.1 MD11G1128600.v1.1 MD11G1128700.v1.1 MD11G1131800.v1.1 MD11G1131900.v1.1 MD11G1132200.v1.1 MD11G1132300.v1.1 MD11G1135500.v1.1
prunus_persica Prupe.3G114600_v2.0.a1 Prupe.3G114700_v2.0.a1 Prupe.3G138000_v2.0.a1 Prupe.6G080500_v2.0.a1 Prupe.6G081600_v2.0.a1 Prupe.6G086000_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087400_v2.0.a1 Prupe.6G087600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G088600_v2.0.a1 Prupe.6G090500_v2.0.a1 Prupe.6G090600_v2.0.a1 Prupe.6G091000_v2.0.a1 Prupe.6G091400_v2.0.a1 Prupe.6G091500_v2.0.a1 Prupe.6G093300_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G094000_v2.0.a1 Prupe.6G106300_v2.0.a1 Prupe.6G117200_v2.0.a1 Prupe.6G117400_v2.0.a1 Prupe.6G195600_v2.0.a1 Prupe.6G195700_v2.0.a1 Prupe.8G027800_v2.0.a1 Prupe.8G078200_v2.0.a1 Prupe.8G078200_v2.0.a1
pyrus_communis pycom03g08210 pycom03g08430 pycom03g08450 pycom03g08500 pycom03g08510 pycom03g08640 pycom03g08650 pycom03g08660 pycom04g01160 pycom11g09860 pycom11g10660 pycom11g10700 pycom11g10730 pycom11g10740 pycom11g10890 pycom11g10900 pycom11g10910 pycom11g11040 pycom11g11070 pycom11g11080 pycom11g11090 pycom11g11110 pycom11g11130 pycom11g11140 pycom11g11240
rosa_chinensis RchiOBHm_Chr2g0133531 RchiOBHm_Chr4g0407671 RchiOBHm_Chr5g0027691 RchiOBHm_Chr5g0027731 RchiOBHm_Chr5g0031841 RchiOBHm_Chr5g0041821 RchiOBHm_Chr5g0061091 RchiOBHm_Chr5g0061131 RchiOBHm_Chr5g0061141 RchiOBHm_Chr5g0062111 RchiOBHm_Chr5g0062121 RchiOBHm_Chr5g0062141 RchiOBHm_Chr5g0062151 RchiOBHm_Chr5g0062161 RchiOBHm_Chr5g0062301 RchiOBHm_Chr5g0062311 RchiOBHm_Chr5g0065171 RchiOBHm_Chr5g0066121 RchiOBHm_Chr5g0066211 RchiOBHm_Chr5g0069221 RchiOBHm_Chr5g0069231 RchiOBHm_Chr5g0069241 RchiOBHm_Chr5g0069251 RchiOBHm_Chr5g0069261 RchiOBHm_Chr5g0069321 RchiOBHm_Chr5g0069341 RchiOBHm_Chr5g0069351 RchiOBHm_Chr5g0069571 RchiOBHm_Chr5g0069581 RchiOBHm_Chr5g0069591 RchiOBHm_Chr5g0069601 RchiOBHm_Chr5g0069651 RchiOBHm_Chr5g0070751 RchiOBHm_Chr5g0071481 RchiOBHm_Chr5g0071931 RchiOBHm_Chr5g0071941 RchiOBHm_Chr5g0072771 RchiOBHm_Chr5g0072831 RchiOBHm_Chr5g0072861 RchiOBHm_Chr5g0072871 RchiOBHm_Chr5g0072901 RchiOBHm_Chr5g0072921 RchiOBHm_Chr5g0073691 RchiOBHm_Chr5g0073711 RchiOBHm_Chr5g0073761 RchiOBHm_Chr5g0074141 RchiOBHm_Chr5g0074181 RchiOBHm_Chr5g0074191 RchiOBHm_Chr5g0074201 RchiOBHm_Chr5g0074231 RchiOBHm_Chr5g0074941 RchiOBHm_Chr5g0074951 RchiOBHm_Chr5g0074961 RchiOBHm_Chr5g0074981 RchiOBHm_Chr5g0075791 RchiOBHm_Chr5g0076111 RchiOBHm_Chr5g0076121 RchiOBHm_Chr5g0076231 RchiOBHm_Chr5g0076241 RchiOBHm_Chr5g0076251 RchiOBHm_Chr5g0076261 RchiOBHm_Chr5g0077441 RchiOBHm_Chr5g0077451 RchiOBHm_Chr5g0077481 RchiOBHm_Chr5g0077511 RchiOBHm_Chr5g0077521 RchiOBHm_Chr5g0077541 RchiOBHm_Chr5g0078461 RchiOBHm_Chr5g0078471 RchiOBHm_Chr5g0078541 RchiOBHm_Chr5g0078551 RchiOBHm_Chr5g0078591 RchiOBHm_Chr5g0078611 RchiOBHm_Chr5g0078801 RchiOBHm_Chr5g0078811 RchiOBHm_Chr7g0226411 RchiOBHm_Chr7g0226421
rosa_laevigata RLG00000001731 RLG00000001921 RLG00000007507 RLG00000008174 RLG00000008512 RLG00000029432 RLG00000033036 RLG00000033038 RLG00000034096 RLG00000035428 RLG00000035433 RLG00000035434 RLG00000035435 RLG00000035535 RLG00000035536 RLG00000035548 RLG00000035751 RLG00000035754 RLG00000035764 RLG00000035882 RLG00000036044 RLG00000036048 RLG00000036060 RLG00000036061 RLG00000036062 RLG00000036063 RLG00000036070 RLG00000036078 RLG00000036079 RLG00000036080 RLG00000036156 RLG00000036218 RLG00000036219 RLG00000036263 RLG00000036264 RLG00000036331 RLG00000036332 RLG00000036333 RLG00000036338 RLG00000036339 RLG00000036344 RLG00000036345 RLG00000036347 RLG00000036348 RLG00000036349 RLG00000036405 RLG00000036416 RLG00000036457 RLG00000036459 RLG00000036515 RLG00000036516 RLG00000036517 RLG00000036646 RLG00000036697 RLG00000036698 RLG00000036699 RLG00000036702 RLG00000036774 RLG00000036775 RLG00000036786 RLG00000036787
rosa_multiflora Rmu_co8164206.1_g000001 Rmu_co8198940.1_g000001 Rmu_co8222088.1_g000001 Rmu_co8267751.1_g000001 Rmu_co8339831.1_g000001 Rmu_sc0000573.1_g000056 Rmu_sc0000573.1_g000057 Rmu_sc0000848.1_g000018 Rmu_sc0000861.1_g000039 Rmu_sc0000956.1_g000006 Rmu_sc0000956.1_g000007 Rmu_sc0000987.1_g000004 Rmu_sc0001264.1_g000011 Rmu_sc0001264.1_g000023 Rmu_sc0001366.1_g000024 Rmu_sc0001366.1_g000034 Rmu_sc0001647.1_g000023 Rmu_sc0001647.1_g000025 Rmu_sc0002101.1_g000008 Rmu_sc0002149.1_g000019 Rmu_sc0002296.1_g000015 Rmu_sc0002296.1_g000018 Rmu_sc0002627.1_g000002 Rmu_sc0002658.1_g000002 Rmu_sc0002658.1_g000004 Rmu_sc0002658.1_g000005 Rmu_sc0002658.1_g000008 Rmu_sc0003160.1_g000001 Rmu_sc0003160.1_g000002 Rmu_sc0003160.1_g000027 Rmu_sc0003264.1_g000007 Rmu_sc0003323.1_g000018 Rmu_sc0003542.1_g000014 Rmu_sc0003945.1_g000018 Rmu_sc0004140.1_g000044 Rmu_sc0004140.1_g000045 Rmu_sc0004277.1_g000049 Rmu_sc0004277.1_g000050 Rmu_sc0004277.1_g000051 Rmu_sc0004277.1_g000056 Rmu_sc0004277.1_g000059 Rmu_sc0004277.1_g000064 Rmu_sc0004277.1_g000065 Rmu_sc0004277.1_g000066 Rmu_sc0004277.1_g000071 Rmu_sc0004277.1_g000073 Rmu_sc0004277.1_g000074 Rmu_sc0004277.1_g000080 Rmu_sc0004277.1_g000081 Rmu_sc0004277.1_g000082 Rmu_sc0004501.1_g000006 Rmu_sc0004501.1_g000008 Rmu_sc0004501.1_g000009 Rmu_sc0005069.1_g000010 Rmu_sc0005069.1_g000013 Rmu_sc0005069.1_g000028 Rmu_sc0005255.1_g000008 Rmu_sc0005255.1_g000009 Rmu_sc0005860.1_g000003 Rmu_sc0005961.1_g000008 Rmu_sc0005961.1_g000009 Rmu_sc0006031.1_g000026 Rmu_sc0006952.1_g000035 Rmu_sc0006984.1_g000001 Rmu_sc0007385.1_g000011 Rmu_sc0007385.1_g000018 Rmu_sc0007385.1_g000019 Rmu_sc0007385.1_g000025 Rmu_sc0009248.1_g000008 Rmu_sc0009248.1_g000016 Rmu_sc0009685.1_g000001 Rmu_sc0009685.1_g000008 Rmu_sc0009911.1_g000004 Rmu_sc0009988.1_g000002 Rmu_sc0013565.1_g000003 Rmu_sc0013615.1_g000005 Rmu_sc0015509.1_g000001 Rmu_sc0016676.1_g000001 Rmu_sc0019146.1_g000001 Rmu_sc0023658.1_g000001 Rmu_sc0026875.1_g000001 Rmu_sc0032705.1_g000003 Rmu_sc0036016.1_g000001 Rmu_sc0038790.1_g000001 Rmu_sc0038790.1_g000002 Rmu_sc0038790.1_g000003 Rmu_sc0041070.1_g000001 Rmu_sc0041071.1_g000001
rosa_roxburghii Rroxscaffold_1G00004470 Rroxscaffold_1G00005600 Rroxscaffold_1G00006630 Rroxscaffold_1G00006640 Rroxscaffold_1G00006680 Rroxscaffold_1G00007240 Rroxscaffold_1G00007270 Rroxscaffold_1G00007600 Rroxscaffold_1G00008320 Rroxscaffold_1G00008330 Rroxscaffold_1G00008390 Rroxscaffold_1G00008400 Rroxscaffold_1G00009250 Rroxscaffold_1G00009640 Rroxscaffold_1G00010430 Rroxscaffold_1G00011430 Rroxscaffold_1G00011580 Rroxscaffold_1G00014270 Rroxscaffold_1G00017730 Rroxscaffold_1G00018390 Rroxscaffold_1G00018400 Rroxscaffold_1G00018410 Rroxscaffold_1G00018550 Rroxscaffold_1G00018580 Rroxscaffold_1G00018590 Rroxscaffold_1G00019560 Rroxscaffold_1G00038700 Rroxscaffold_1G00038710 Rroxscaffold_1G00051880 Rroxscaffold_2G00122050 Rroxscaffold_2G00122060 Rroxscaffold_2G00122070 Rroxscaffold_3G00232850 Rroxscaffold_3G00233170 Rroxscaffold_3G00235240 Rroxscaffold_3G00236030 Rroxscaffold_4G00316710 Rroxscaffold_5G00352260 Rroxscaffold_5G00354420 Rroxscaffold_5G00358050 Rroxscaffold_5G00366080 Rroxscaffold_5G00384640 Rroxscaffold_6G00394470
rosa_rugosa Rorug02G0236100 Rorug02G0312600 Rorug02G0312600 Rorug04G0081200 Rorug04G0099500 Rorug04G0125700 Rorug04G0192800 Rorug04G0192800 Rorug05G0100300 Rorug05G0195500 Rorug05G0337500 Rorug05G0338000 Rorug05G0338100 Rorug05G0338200 Rorug05G0346000 Rorug05G0346100 Rorug05G0346300 Rorug05G0346400 Rorug05G0347500 Rorug05G0347500 Rorug05G0347700 Rorug05G0347800 Rorug05G0376600 Rorug05G0376600 Rorug05G0379000 Rorug05G0396800 Rorug05G0397000 Rorug05G0397000 Rorug05G0397000 Rorug05G0397200 Rorug05G0398400 Rorug05G0398500 Rorug05G0399000 Rorug05G0412600 Rorug05G0412700 Rorug05G0415700 Rorug05G0419800 Rorug05G0419900 Rorug05G0420000 Rorug05G0420100 Rorug05G0420200 Rorug05G0420500 Rorug05G0429200 Rorug05G0429300 Rorug05G0429400 Rorug05G0429600 Rorug05G0429600 Rorug05G0442200 Rorug05G0446100 Rorug05G0446100 Rorug05G0446100 Rorug05G0446100 Rorug05G0446100 Rorug05G0446200 Rorug05G0446200 Rorug05G0446300 Rorug05G0455000 Rorug05G0455000 Rorug05G0455200 Rorug05G0455400 Rorug05G0461000 Rorug06G0021200 Rorug07G0220800 Rorug07G0237100
rosa_samantha Rh4DG139600 Rh7AG368500 Rh7DG382400
rosa_wichuraiana Rw0G005990 Rw0G015820 Rw0G023090 Rw1G011560 Rw5G026460 Rw5G037630 Rw5G040110 Rw5G042370 Rw5G042480 Rw5G042500 Rw5G042520 Rw5G043540 Rw5G043840 Rw5G044270 Rw5G044280 Rw5G044310 Rw5G044320 Rw5G044940 Rw5G045650 Rw5G045660 Rw5G045670 Rw5G046760 Rw5G047270 Rw5G047280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 740, 1697, 1826
Acc36I ACCTGC 1 cut(s) 657
AccB1I GGYRCC 1 cut(s) 1344
AccII CGCG 1 cut(s) 39
AclWI GGATC 7 cut(s) 14, 910, 923, 1160, 1444, 1659, 1677
AcoI YGGCCR 1 cut(s) 1259
AcsI RAATTY 1 cut(s) 804
AcuI CTGAAG 3 cut(s) 368, 1475, 1512
AcyI GRCGYC 1 cut(s) 1345
AfaI GTAC 6 cut(s) 440, 676, 968, 1214, 1585, 1821
AfiI CCNNNNNNNGG 4 cut(s) 316, 434, 575, 1496
AgsI TTSAA 8 cut(s) 225, 545, 618, 866, 1311, 1325, 1391, 1572
AhdI GACNNNNNGTC 1 cut(s) 1714
AjnI CCWGG 5 cut(s) 568, 949, 1129, 1256, 1800
Alw21I GWGCWC 1 cut(s) 375
Alw26I GTCTC 1 cut(s) 337
AlwI GGATC 7 cut(s) 14, 910, 923, 1160, 1444, 1659, 1677
AoxI GGCC 5 cut(s) 458, 947, 1259, 1531, 1682
ApeKI GCWGC 3 cut(s) 1061, 1445, 1448
ApoI RAATTY 1 cut(s) 804
Asp700I GAANNNNTTC 1 cut(s) 272
AspLEI GCGC 2 cut(s) 39, 1347
AspS9I GGNCC 5 cut(s) 355, 445, 459, 831, 1499
AsuC2I CCSGG 1 cut(s) 278
AsuHPI GGTGA 5 cut(s) 37, 497, 563, 1200, 1486
AvaII GGWCC 4 cut(s) 355, 445, 831, 1499
AxyI CCTNAGG 1 cut(s) 1862
BaeGI GKGCMC 1 cut(s) 1033
BalI TGGCCA 1 cut(s) 1261
BamHI GGATCC 1 cut(s) 915
BanI GGYRCC 1 cut(s) 1344
BarI GAAGNNNNNNTAC 2 cut(s) 654, 686
BbsI GAAGAC 1 cut(s) 1606
Bbv12I GWGCWC 1 cut(s) 375
BbvCI CCTCAGC 1 cut(s) 1647
BbvI GCAGC 3 cut(s) 1048, 1435, 1457
BccI CCATC 9 cut(s) 197, 239, 361, 532, 905, 1356, 1408, 1490, 1660
BcgI CGANNNNNNTGC 2 cut(s) 396, 430
BciT130I CCWGG 5 cut(s) 570, 951, 1131, 1258, 1802
BclI TGATCA 2 cut(s) 42, 1219
BcnI CCSGG 1 cut(s) 278
BcoDI GTCTC 1 cut(s) 337
BfaI CTAG 3 cut(s) 827, 932, 1266
BfoI RGCGCY 1 cut(s) 1348
BfuAI ACCTGC 1 cut(s) 657
BglI GCCNNNNNGGC 1 cut(s) 1539
BglII AGATCT 4 cut(s) 14, 152, 857, 1003
BisI GCNGC 3 cut(s) 1062, 1446, 1449
BlsI GCNGC 3 cut(s) 1063, 1447, 1450
Bme1390I CCNGG 6 cut(s) 278, 570, 951, 1131, 1258, 1802
Bme18I GGWCC 4 cut(s) 355, 445, 831, 1499
BmeRI GACNNNNNGTC 1 cut(s) 1714
BmgT120I GGNCC 5 cut(s) 355, 445, 459, 831, 1499
BmiI GGNNCC 9 cut(s) 100, 447, 461, 832, 902, 917, 1073, 1254, 1346
BmrFI CCNGG 6 cut(s) 278, 570, 951, 1131, 1258, 1802
BmrI ACTGGG 1 cut(s) 1768
BmsI GCATC 4 cut(s) 137, 778, 1162, 1212
BmuI ACTGGG 1 cut(s) 1768
BpiI GAAGAC 1 cut(s) 1606
BpmI CTGGAG 3 cut(s) 381, 960, 1768
Bpu10I CCTNAGC 3 cut(s) 751, 944, 1647
BpuEI CTTGAG 3 cut(s) 947, 1396, 1682
BpuMI CCSGG 1 cut(s) 278
BsaAI YACGTR 1 cut(s) 674
BsaBI GATNNNNATC 2 cut(s) 768, 1164
BsaHI GRCGYC 1 cut(s) 1345
BsaJI CCNNGG 2 cut(s) 569, 1256
BsaXI ACNNNNNCTCC 8 cut(s) 1126, 1156, 1264, 1267, 1294, 1297, 1800, 1830
Bsc4I CCNNNNNNNGG 4 cut(s) 316, 434, 575, 1496
Bse1I ACTGG 4 cut(s) 539, 1693, 1763, 1785
Bse21I CCTNAGG 1 cut(s) 1862
Bse8I GATNNNNATC 2 cut(s) 768, 1164
BseBI CCWGG 5 cut(s) 570, 951, 1131, 1258, 1802
BseDI CCNNGG 2 cut(s) 569, 1256
BseGI GGATG 4 cut(s) 196, 220, 543, 1000
BseJI GATNNNNATC 2 cut(s) 768, 1164
BseLI CCNNNNNNNGG 4 cut(s) 316, 434, 575, 1496
BseMII CTCAG 4 cut(s) 958, 1638, 1693, 1876
BseNI ACTGG 4 cut(s) 539, 1693, 1763, 1785
BseRI GAGGAG 5 cut(s) 417, 1134, 1269, 1272, 1275
BseSI GKGCMC 1 cut(s) 1033
BseXI GCAGC 3 cut(s) 1048, 1435, 1457
BsgI GTGCAG 1 cut(s) 1739
Bsh1236I CGCG 1 cut(s) 39
BshFI GGCC 5 cut(s) 460, 949, 1261, 1533, 1684
BshNI GGYRCC 1 cut(s) 1344
BsiHKAI GWGCWC 1 cut(s) 375
BsiSI CCGG 1 cut(s) 278
BslFI GGGAC 3 cut(s) 431, 844, 1472
BslI CCNNNNNNNGG 4 cut(s) 316, 434, 575, 1496
BsmAI GTCTC 1 cut(s) 337
BsmFI GGGAC 3 cut(s) 431, 844, 1472
BsmI GAATGC 1 cut(s) 1643
BsnI GGCC 5 cut(s) 460, 949, 1261, 1533, 1684
Bsp1286I GDGCHC 2 cut(s) 375, 1033
BspANI GGCC 5 cut(s) 460, 949, 1261, 1533, 1684
BspCNI CTCAG 4 cut(s) 957, 1639, 1692, 1875
BspFNI CGCG 1 cut(s) 39
BspHI TCATGA 1 cut(s) 1222
BspLI GGNNCC 9 cut(s) 100, 447, 461, 832, 902, 917, 1073, 1254, 1346
BspMI ACCTGC 1 cut(s) 657
BspPI GGATC 7 cut(s) 14, 910, 923, 1160, 1444, 1659, 1677
BspQI GCTCTTC 1 cut(s) 263
BspT107I GGYRCC 1 cut(s) 1344
BsrI ACTGG 4 cut(s) 539, 1693, 1763, 1785
BssECI CCNNGG 2 cut(s) 569, 1256
BssNI GRCGYC 1 cut(s) 1345
Bst2UI CCWGG 5 cut(s) 570, 951, 1131, 1258, 1802
Bst4CI ACNGT 7 cut(s) 265, 679, 878, 1081, 1112, 1212, 1716
Bst6I CTCTTC 1 cut(s) 263
BstACI GRCGYC 1 cut(s) 1345
BstBAI YACGTR 1 cut(s) 674
BstC8I GCNNGC 2 cut(s) 1201, 1263
BstDEI CTNAG 5 cut(s) 751, 944, 1647, 1679, 1862
BstENI CCTNNNNNAGG 2 cut(s) 432, 573
BstF5I GGATG 4 cut(s) 196, 220, 543, 1000
BstFNI CGCG 1 cut(s) 39
BstH2I RGCGCY 1 cut(s) 1348
BstHHI GCGC 2 cut(s) 39, 1347
BstMAI GTCTC 1 cut(s) 337
BstMWI GCNNNNNNNGC 2 cut(s) 620, 1539
BstNI CCWGG 5 cut(s) 570, 951, 1131, 1258, 1802
BstNSI RCATGY 1 cut(s) 1048
BstSCI CCNGG 6 cut(s) 276, 568, 949, 1129, 1256, 1800
BstSLI GKGCMC 1 cut(s) 1033
BstSNI TACGTA 1 cut(s) 674
BstUI CGCG 1 cut(s) 39
BstV1I GCAGC 3 cut(s) 1048, 1435, 1457
BstV2I GAAGAC 1 cut(s) 1606
BstX2I RGATCY 6 cut(s) 14, 152, 857, 915, 1003, 1651
BstXI CCANNNNNNTGG 2 cut(s) 456, 911
BstYI RGATCY 6 cut(s) 14, 152, 857, 915, 1003, 1651
Bsu36I CCTNAGG 1 cut(s) 1862
BsuRI GGCC 5 cut(s) 460, 949, 1261, 1533, 1684
BtsCI GGATG 4 cut(s) 196, 220, 543, 1000
BtsI GCAGTG 2 cut(s) 1648, 1751
BtsIMutI CAGTG 6 cut(s) 270, 874, 1648, 1725, 1751, 1756
BveI ACCTGC 1 cut(s) 657
Cac8I GCNNGC 2 cut(s) 1201, 1263
CciI TCATGA 1 cut(s) 1222
CfoI GCGC 2 cut(s) 39, 1347
Cfr13I GGNCC 5 cut(s) 355, 445, 459, 831, 1499
Csp6I GTAC 6 cut(s) 439, 675, 967, 1213, 1584, 1820
CviAII CATG 5 cut(s) 515, 1045, 1223, 1432, 1601
CviQI GTAC 6 cut(s) 439, 675, 967, 1213, 1584, 1820
DdeI CTNAG 5 cut(s) 751, 944, 1647, 1679, 1862
DinI GGCGCC 1 cut(s) 1346
DriI GACNNNNNGTC 1 cut(s) 1714
EaeI YGGCCR 1 cut(s) 1259
Eam1104I CTCTTC 1 cut(s) 263
Eam1105I GACNNNNNGTC 1 cut(s) 1714
EarI CTCTTC 1 cut(s) 263
Eco105I TACGTA 1 cut(s) 674
Eco147I AGGCCT 1 cut(s) 1533
Eco47I GGWCC 4 cut(s) 355, 445, 831, 1499
Eco57I CTGAAG 3 cut(s) 368, 1475, 1512
Eco81I CCTNAGG 1 cut(s) 1862
EcoNI CCTNNNNNAGG 2 cut(s) 432, 573
EcoO109I RGGNCCY 1 cut(s) 445
EcoRI GAATTC 1 cut(s) 804
EcoRII CCWGG 5 cut(s) 568, 949, 1129, 1256, 1800
EgeI GGCGCC 1 cut(s) 1346
EheI GGCGCC 1 cut(s) 1346
FaeI CATG 5 cut(s) 518, 1048, 1226, 1435, 1604
FalI AAGNNNNNCTT 4 cut(s) 829, 861, 844, 876
FaqI GGGAC 3 cut(s) 431, 844, 1472
FatI CATG 5 cut(s) 514, 1044, 1222, 1431, 1600
FauNDI CATATG 1 cut(s) 985
FbaI TGATCA 2 cut(s) 42, 1219
Fnu4HI GCNGC 3 cut(s) 1062, 1446, 1449
FokI GGATG 4 cut(s) 203, 227, 550, 1007
Fsp4HI GCNGC 3 cut(s) 1062, 1446, 1449
FspBI CTAG 3 cut(s) 827, 932, 1266
GlaI GCGC 2 cut(s) 38, 1346
GluI GCNGC 3 cut(s) 1062, 1446, 1449
GsuI CTGGAG 3 cut(s) 381, 960, 1768
HaeII RGCGCY 1 cut(s) 1348
HaeIII GGCC 5 cut(s) 460, 949, 1261, 1533, 1684
HapII CCGG 1 cut(s) 278
HhaI GCGC 2 cut(s) 39, 1347
Hin1I GRCGYC 1 cut(s) 1345
Hin1II CATG 5 cut(s) 518, 1048, 1226, 1435, 1604
Hin6I GCGC 2 cut(s) 37, 1345
HinP1I GCGC 2 cut(s) 37, 1345
HindIII AAGCTT 2 cut(s) 164, 1197
HinfI GANTC 8 cut(s) 218, 421, 1369, 1378, 1391, 1781, 1793, 1868
HpaII CCGG 1 cut(s) 278
HphI GGTGA 5 cut(s) 37, 497, 563, 1200, 1486
Hpy188III TCNNGA 6 cut(s) 398, 926, 977, 1169, 1223, 1375
HpyAV CCTTC 4 cut(s) 402, 656, 929, 1450
HpyCH4III ACNGT 7 cut(s) 265, 679, 878, 1081, 1112, 1212, 1716
HpyCH4IV ACGT 3 cut(s) 673, 687, 1815
HpyF10VI GCNNNNNNNGC 2 cut(s) 620, 1539
HpyF3I CTNAG 5 cut(s) 751, 944, 1647, 1679, 1862
HpySE526I ACGT 3 cut(s) 673, 687, 1815
Hsp92I GRCGYC 1 cut(s) 1345
Hsp92II CATG 5 cut(s) 518, 1048, 1226, 1435, 1604
HspAI GCGC 2 cut(s) 37, 1345
KasI GGCGCC 1 cut(s) 1344
Ksp22I TGATCA 2 cut(s) 42, 1219
LguI GCTCTTC 1 cut(s) 263
LmnI GCTCC 4 cut(s) 370, 596, 906, 1258
Lsp1109I GCAGC 3 cut(s) 1048, 1435, 1457
LweI GCATC 4 cut(s) 137, 778, 1162, 1212
MaeI CTAG 3 cut(s) 827, 932, 1266
MaeII ACGT 3 cut(s) 673, 687, 1815
MaeIII GTNAC 5 cut(s) 259, 551, 669, 1706, 1853
MboII GAAGA 9 cut(s) 24, 213, 254, 280, 713, 914, 1013, 1505, 1606
MfeI CAATTG 2 cut(s) 412, 618
MflI RGATCY 6 cut(s) 14, 152, 857, 915, 1003, 1651
MhlI GDGCHC 2 cut(s) 375, 1033
MlsI TGGCCA 1 cut(s) 1261
MluCI AATT 7 cut(s) 412, 618, 785, 804, 891, 1360, 1698
MluNI TGGCCA 1 cut(s) 1261
Mly113I GGCGCC 1 cut(s) 1345
MlyI GAGTC 2 cut(s) 1387, 1775
MmeI TCCRAC 4 cut(s) 333, 549, 1031, 1821
Mox20I TGGCCA 1 cut(s) 1261
MroXI GAANNNNTTC 1 cut(s) 272
MscI TGGCCA 1 cut(s) 1261
MseI TTAA 1 cut(s) 1734
Msp20I TGGCCA 1 cut(s) 1261
MspA1I CMGCKG 2 cut(s) 1448, 1554
MspI CCGG 1 cut(s) 278
MspR9I CCNGG 6 cut(s) 278, 570, 951, 1131, 1258, 1802
MunI CAATTG 2 cut(s) 412, 618
Mva1269I GAATGC 1 cut(s) 1643
MvaI CCWGG 5 cut(s) 570, 951, 1131, 1258, 1802
MvnI CGCG 1 cut(s) 39
MwoI GCNNNNNNNGC 2 cut(s) 620, 1539
NarI GGCGCC 1 cut(s) 1345
NciI CCSGG 1 cut(s) 278
NdeI CATATG 1 cut(s) 985
NlaIII CATG 5 cut(s) 518, 1048, 1226, 1435, 1604
NlaIV GGNNCC 9 cut(s) 100, 447, 461, 832, 902, 917, 1073, 1254, 1346
NmuCI GTSAC 3 cut(s) 551, 1706, 1853
NspI RCATGY 1 cut(s) 1048
PagI TCATGA 1 cut(s) 1222
PceI AGGCCT 1 cut(s) 1533
PciSI GCTCTTC 1 cut(s) 263
PcsI WCGNNNNNNNCGW 1 cut(s) 1812
PctI GAATGC 1 cut(s) 1643
PdmI GAANNNNTTC 1 cut(s) 272
PfeI GAWTC 6 cut(s) 218, 421, 1369, 1391, 1793, 1868
PkrI GCNGC 3 cut(s) 1063, 1447, 1450
PleI GAGTC 2 cut(s) 1386, 1775
PluTI GGCGCC 1 cut(s) 1348
PpsI GAGTC 2 cut(s) 1386, 1775
Ppu21I YACGTR 1 cut(s) 674
PpuMI RGGWCCY 1 cut(s) 445
PsiI TTATAA 3 cut(s) 740, 1697, 1826
Psp5II RGGWCCY 1 cut(s) 445
Psp6I CCWGG 5 cut(s) 568, 949, 1129, 1256, 1800
PspGI CCWGG 5 cut(s) 568, 949, 1129, 1256, 1800
PspN4I GGNNCC 9 cut(s) 100, 447, 461, 832, 902, 917, 1073, 1254, 1346
PspPI GGNCC 5 cut(s) 355, 445, 459, 831, 1499
PspPPI RGGWCCY 1 cut(s) 445
PsuI RGATCY 6 cut(s) 14, 152, 857, 915, 1003, 1651
PvuII CAGCTG 2 cut(s) 1448, 1554
RsaI GTAC 6 cut(s) 440, 676, 968, 1214, 1585, 1821
RsaNI GTAC 6 cut(s) 439, 675, 967, 1213, 1584, 1820
SapI GCTCTTC 1 cut(s) 263
SaqAI TTAA 1 cut(s) 1734
SatI GCNGC 3 cut(s) 1062, 1446, 1449
Sau96I GGNCC 5 cut(s) 355, 445, 459, 831, 1499
SchI GAGTC 2 cut(s) 1387, 1775
ScrFI CCNGG 6 cut(s) 278, 570, 951, 1131, 1258, 1802
SduI GDGCHC 2 cut(s) 375, 1033
SfaNI GCATC 4 cut(s) 137, 778, 1162, 1212
SfoI GGCGCC 1 cut(s) 1346
SinI GGWCC 4 cut(s) 355, 445, 831, 1499
SmlI CTYRAG 3 cut(s) 926, 1375, 1661
SmoI CTYRAG 3 cut(s) 926, 1375, 1661
SnaBI TACGTA 1 cut(s) 674
Sse9I AATT 7 cut(s) 412, 618, 785, 804, 891, 1360, 1698
SseBI AGGCCT 1 cut(s) 1533
SspDI GGCGCC 1 cut(s) 1344
SspMI CTAG 3 cut(s) 827, 932, 1266
StuI AGGCCT 1 cut(s) 1533
StyD4I CCNGG 6 cut(s) 276, 568, 949, 1129, 1256, 1800
TaaI ACNGT 7 cut(s) 265, 679, 878, 1081, 1112, 1212, 1716
TaiI ACGT 3 cut(s) 676, 690, 1818
TaqI TCGA 2 cut(s) 1288, 1351
TasI AATT 7 cut(s) 412, 618, 785, 804, 891, 1360, 1698
TatI WGTACW 1 cut(s) 1819
TfiI GAWTC 6 cut(s) 218, 421, 1369, 1391, 1793, 1868
Tru1I TTAA 1 cut(s) 1734
Tru9I TTAA 1 cut(s) 1734
TscAI CASTG 6 cut(s) 270, 881, 1648, 1725, 1758, 1763
TseFI GTSAC 3 cut(s) 551, 1706, 1853
TseI GCWGC 3 cut(s) 1061, 1445, 1448
Tsp45I GTSAC 3 cut(s) 551, 1706, 1853
TspDTI ATGAA 7 cut(s) 162, 231, 489, 675, 1329, 1436, 1493
TspGWI ACGGA 2 cut(s) 1694, 1821
TspRI CASTG 6 cut(s) 270, 881, 1648, 1725, 1758, 1763
VpaK11BI GGWCC 4 cut(s) 355, 445, 831, 1499
XagI CCTNNNNNAGG 2 cut(s) 432, 573
XapI RAATTY 1 cut(s) 804
XceI RCATGY 1 cut(s) 1048
XcmI CCANNNNNNNNNTGG 2 cut(s) 1176, 1755
XmnI GAANNNNTTC 1 cut(s) 272
XspI CTAG 3 cut(s) 827, 932, 1266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.