Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 394 - 441 | 5.3e-07 | PPR repeat family |
| PPR_2 | PF13041 | 496 - 529 | 9.2e-07 | PPR repeat family |
| PPR_1 | PF12854 | 512 - 543 | 5.4e-06 | PPR repeat |
| PPR_1 | PF12854 | 549 - 575 | 3.8e-06 | PPR repeat |
| PPR_2 | PF13041 | 551 - 599 | 3.2e-15 | PPR repeat family |
| PPR_1 | PF12854 | 581 - 613 | 8.8e-09 | PPR repeat |
| PPR | PF01535 | 589 - 618 | 1e-05 | PPR repeat |
| PPR_2 | PF13041 | 593 - 633 | 8.3e-09 | PPR repeat family |
| PPR_2 | PF13041 | 624 - 667 | 1.5e-06 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1044 |
| Acc36I | ACCTGC | 2 cut(s) | 1152, 1469 |
| AccBSI | CCGCTC | 1 cut(s) | 307 |
| AccI | GTMKAC | 2 cut(s) | 394, 1289 |
| AccII | CGCG | 1 cut(s) | 1156 |
| AciI | CCGC | 6 cut(s) | 307, 470, 553, 983, 1392, 1710 |
| AclWI | GGATC | 5 cut(s) | 962, 1073, 1094, 1653, 2012 |
| AcsI | RAATTY | 2 cut(s) | 1360, 1491 |
| AfaI | GTAC | 7 cut(s) | 65, 168, 209, 575, 731, 807, 1018 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 539, 822, 951 |
| AflII | CTTAAG | 1 cut(s) | 506 |
| AflIII | ACRYGT | 1 cut(s) | 210 |
| AhlI | ACTAGT | 1 cut(s) | 437 |
| Alw21I | GWGCWC | 3 cut(s) | 218, 552, 717 |
| Alw26I | GTCTC | 4 cut(s) | 48, 1519, 1710, 1904 |
| Alw44I | GTGCAC | 1 cut(s) | 713 |
| AlwI | GGATC | 5 cut(s) | 962, 1073, 1094, 1653, 2012 |
| AoxI | GGCC | 4 cut(s) | 88, 466, 1534, 1576 |
| ApaLI | GTGCAC | 1 cut(s) | 713 |
| ApeKI | GCWGC | 6 cut(s) | 755, 785, 929, 968, 1448, 2032 |
| ApoI | RAATTY | 2 cut(s) | 1360, 1491 |
| AseI | ATTAAT | 1 cut(s) | 71 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1133 |
| AspS9I | GGNCC | 2 cut(s) | 467, 1869 |
| AsuC2I | CCSGG | 1 cut(s) | 1083 |
| AsuHPI | GGTGA | 2 cut(s) | 917, 1453 |
| AvaII | GGWCC | 1 cut(s) | 1869 |
| AxyI | CCTNAGG | 1 cut(s) | 1443 |
| BaeGI | GKGCMC | 1 cut(s) | 717 |
| BanII | GRGCYC | 1 cut(s) | 552 |
| BbsI | GAAGAC | 1 cut(s) | 1370 |
| Bbv12I | GWGCWC | 3 cut(s) | 218, 552, 717 |
| BbvCI | CCTCAGC | 1 cut(s) | 1113 |
| BbvI | GCAGC | 6 cut(s) | 742, 772, 916, 955, 1435, 2044 |
| BccI | CCATC | 4 cut(s) | 313, 1247, 1568, 1856 |
| BceAI | ACGGC | 2 cut(s) | 981, 1305 |
| BcnI | CCSGG | 1 cut(s) | 1083 |
| BcoDI | GTCTC | 4 cut(s) | 48, 1519, 1710, 1904 |
| BcuI | ACTAGT | 1 cut(s) | 437 |
| BfaI | CTAG | 4 cut(s) | 438, 464, 489, 689 |
| BfmI | CTRYAG | 7 cut(s) | 395, 756, 923, 1414, 1602, 1608, 1962 |
| BfrI | CTTAAG | 1 cut(s) | 506 |
| BfuAI | ACCTGC | 2 cut(s) | 1152, 1469 |
| BisI | GCNGC | 7 cut(s) | 756, 786, 930, 969, 1392, 1449, 2033 |
| BlpI | GCTNAGC | 1 cut(s) | 386 |
| BlsI | GCNGC | 7 cut(s) | 757, 787, 931, 970, 1393, 1450, 2034 |
| Bme1390I | CCNGG | 1 cut(s) | 1083 |
| Bme18I | GGWCC | 1 cut(s) | 1869 |
| BmgT120I | GGNCC | 2 cut(s) | 467, 1869 |
| BmrFI | CCNGG | 1 cut(s) | 1083 |
| BmsI | GCATC | 7 cut(s) | 217, 350, 442, 1111, 1512, 1957, 1979 |
| BpiI | GAAGAC | 1 cut(s) | 1370 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1499, 1531 |
| BpmI | CTGGAG | 3 cut(s) | 722, 1493, 1842 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1113 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 386 |
| BpuEI | CTTGAG | 2 cut(s) | 101, 1967 |
| BpuMI | CCSGG | 1 cut(s) | 1083 |
| BsaI | GGTCTC | 2 cut(s) | 1519, 1710 |
| BsaJI | CCNNGG | 3 cut(s) | 21, 1082, 1888 |
| BsaWI | WCCGGW | 1 cut(s) | 177 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 539, 822, 951 |
| Bse1I | ACTGG | 1 cut(s) | 816 |
| Bse21I | CCTNAGG | 1 cut(s) | 1443 |
| Bse3DI | GCAATG | 2 cut(s) | 98, 957 |
| BseDI | CCNNGG | 3 cut(s) | 21, 1082, 1888 |
| BseGI | GGATG | 5 cut(s) | 324, 412, 1126, 1239, 1856 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 539, 822, 951 |
| BseMI | GCAATG | 2 cut(s) | 98, 957 |
| BseMII | CTCAG | 5 cut(s) | 108, 1104, 1434, 1509, 1820 |
| BseNI | ACTGG | 1 cut(s) | 816 |
| BseRI | GAGGAG | 2 cut(s) | 10, 1130 |
| BseSI | GKGCMC | 1 cut(s) | 717 |
| BseXI | GCAGC | 6 cut(s) | 742, 772, 916, 955, 1435, 2044 |
| BsgI | GTGCAG | 3 cut(s) | 915, 1218, 1434 |
| Bsh1236I | CGCG | 1 cut(s) | 1156 |
| BshFI | GGCC | 4 cut(s) | 90, 468, 1536, 1578 |
| BsiHKAI | GWGCWC | 3 cut(s) | 218, 552, 717 |
| BsiSI | CCGG | 2 cut(s) | 178, 1082 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 539, 822, 951 |
| BsmAI | GTCTC | 4 cut(s) | 48, 1519, 1710, 1904 |
| BsnI | GGCC | 4 cut(s) | 90, 468, 1536, 1578 |
| Bso31I | GGTCTC | 2 cut(s) | 1519, 1710 |
| Bsp1286I | GDGCHC | 3 cut(s) | 218, 552, 717 |
| Bsp1407I | TGTACA | 1 cut(s) | 63 |
| Bsp143I | GATC | 6 cut(s) | 820, 954, 1078, 1086, 1645, 2017 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 386 |
| BspACI | CCGC | 6 cut(s) | 307, 470, 553, 983, 1392, 1710 |
| BspANI | GGCC | 4 cut(s) | 90, 468, 1536, 1578 |
| BspCNI | CTCAG | 5 cut(s) | 109, 1105, 1435, 1510, 1821 |
| BspFNI | CGCG | 1 cut(s) | 1156 |
| BspHI | TCATGA | 2 cut(s) | 109, 2048 |
| BspMAI | CTGCAG | 2 cut(s) | 760, 1966 |
| BspMI | ACCTGC | 2 cut(s) | 1152, 1469 |
| BspPI | GGATC | 5 cut(s) | 962, 1073, 1094, 1653, 2012 |
| BspQI | GCTCTTC | 3 cut(s) | 160, 223, 375 |
| BspTI | CTTAAG | 1 cut(s) | 506 |
| BspTNI | GGTCTC | 2 cut(s) | 1519, 1710 |
| BsrBI | CCGCTC | 1 cut(s) | 307 |
| BsrDI | GCAATG | 2 cut(s) | 98, 957 |
| BsrGI | TGTACA | 1 cut(s) | 63 |
| BsrI | ACTGG | 1 cut(s) | 816 |
| BssECI | CCNNGG | 3 cut(s) | 21, 1082, 1888 |
| BssMI | GATC | 6 cut(s) | 820, 954, 1078, 1086, 1645, 2017 |
| BssNAI | GTATAC | 1 cut(s) | 1290 |
| Bst1107I | GTATAC | 1 cut(s) | 1290 |
| Bst4CI | ACNGT | 8 cut(s) | 42, 63, 485, 1016, 1073, 1180, 1774, 1907 |
| Bst6I | CTCTTC | 5 cut(s) | 160, 223, 375, 1253, 1500 |
| BstAFI | CTTAAG | 1 cut(s) | 506 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 755, 938 |
| BstAUI | TGTACA | 1 cut(s) | 63 |
| BstC8I | GCNNGC | 6 cut(s) | 199, 309, 470, 783, 1154, 1538 |
| BstDEI | CTNAG | 8 cut(s) | 117, 386, 863, 1113, 1443, 1518, 1619, 1829 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 949 |
| BstF5I | GGATG | 5 cut(s) | 324, 412, 1126, 1239, 1856 |
| BstFNI | CGCG | 1 cut(s) | 1156 |
| BstKTI | GATC | 6 cut(s) | 823, 957, 1081, 1089, 1648, 2020 |
| BstMAI | GTCTC | 4 cut(s) | 48, 1519, 1710, 1904 |
| BstMBI | GATC | 6 cut(s) | 820, 954, 1078, 1086, 1645, 2017 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 755, 938, 968, 977, 1153, 1162, 1624 |
| BstNSI | RCATGY | 1 cut(s) | 214 |
| BstSCI | CCNGG | 1 cut(s) | 1081 |
| BstSFI | CTRYAG | 7 cut(s) | 395, 756, 923, 1414, 1602, 1608, 1962 |
| BstSLI | GKGCMC | 1 cut(s) | 717 |
| BstUI | CGCG | 1 cut(s) | 1156 |
| BstV1I | GCAGC | 6 cut(s) | 742, 772, 916, 955, 1435, 2044 |
| BstV2I | GAAGAC | 1 cut(s) | 1370 |
| BstX2I | RGATCY | 2 cut(s) | 1645, 2017 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1471, 1866 |
| BstYI | RGATCY | 2 cut(s) | 1645, 2017 |
| BstZ17I | GTATAC | 1 cut(s) | 1290 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1443 |
| BsuRI | GGCC | 4 cut(s) | 90, 468, 1536, 1578 |
| BtsCI | GGATG | 5 cut(s) | 324, 412, 1126, 1239, 1856 |
| BtsI | GCAGTG | 3 cut(s) | 93, 318, 765 |
| BtsIMutI | CAGTG | 8 cut(s) | 93, 256, 318, 490, 765, 823, 1770, 1912 |
| BveI | ACCTGC | 2 cut(s) | 1152, 1469 |
| Cac8I | GCNNGC | 6 cut(s) | 199, 309, 470, 783, 1154, 1538 |
| CciI | TCATGA | 2 cut(s) | 109, 2048 |
| Cfr13I | GGNCC | 2 cut(s) | 467, 1869 |
| CseI | GACGC | 2 cut(s) | 1145, 1256 |
| Csp6I | GTAC | 7 cut(s) | 64, 167, 208, 574, 730, 806, 1017 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 354, 389 |
| CviQI | GTAC | 7 cut(s) | 64, 167, 208, 574, 730, 806, 1017 |
| DdeI | CTNAG | 8 cut(s) | 117, 386, 863, 1113, 1443, 1518, 1619, 1829 |
| DpnI | GATC | 6 cut(s) | 822, 956, 1080, 1088, 1647, 2019 |
| DpnII | GATC | 6 cut(s) | 820, 954, 1078, 1086, 1645, 2017 |
| Eam1104I | CTCTTC | 5 cut(s) | 160, 223, 375, 1253, 1500 |
| EarI | CTCTTC | 5 cut(s) | 160, 223, 375, 1253, 1500 |
| Ecl136II | GAGCTC | 1 cut(s) | 550 |
| Eco24I | GRGCYC | 1 cut(s) | 552 |
| Eco31I | GGTCTC | 2 cut(s) | 1519, 1710 |
| Eco47I | GGWCC | 1 cut(s) | 1869 |
| Eco53kI | GAGCTC | 1 cut(s) | 550 |
| Eco81I | CCTNAGG | 1 cut(s) | 1443 |
| EcoICRI | GAGCTC | 1 cut(s) | 550 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 949 |
| EcoRI | GAATTC | 1 cut(s) | 1491 |
| EcoT22I | ATGCAT | 2 cut(s) | 351, 1972 |
| EcoT38I | GRGCYC | 1 cut(s) | 552 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1632, 1664, 1929, 1961 |
| FauI | CCCGC | 2 cut(s) | 300, 477 |
| FauNDI | CATATG | 1 cut(s) | 149 |
| FblI | GTMKAC | 2 cut(s) | 394, 1289 |
| Fnu4HI | GCNGC | 7 cut(s) | 756, 786, 930, 969, 1392, 1449, 2033 |
| FokI | GGATG | 5 cut(s) | 331, 419, 1133, 1226, 1863 |
| FriOI | GRGCYC | 1 cut(s) | 552 |
| Fsp4HI | GCNGC | 7 cut(s) | 756, 786, 930, 969, 1392, 1449, 2033 |
| FspBI | CTAG | 4 cut(s) | 438, 464, 489, 689 |
| GluI | GCNGC | 7 cut(s) | 756, 786, 930, 969, 1392, 1449, 2033 |
| GsuI | CTGGAG | 3 cut(s) | 722, 1493, 1842 |
| HaeIII | GGCC | 4 cut(s) | 90, 468, 1536, 1578 |
| HapII | CCGG | 2 cut(s) | 178, 1082 |
| HgaI | GACGC | 2 cut(s) | 1145, 1256 |
| HincII | GTYRAC | 2 cut(s) | 415, 850 |
| HindII | GTYRAC | 2 cut(s) | 415, 850 |
| HindIII | AAGCTT | 1 cut(s) | 77 |
| HinfI | GANTC | 8 cut(s) | 323, 656, 677, 1204, 1327, 1706, 1780, 2045 |
| HpaII | CCGG | 2 cut(s) | 178, 1082 |
| HphI | GGTGA | 2 cut(s) | 917, 1453 |
| Hpy188I | TCNGA | 5 cut(s) | 25, 534, 825, 1519, 1889 |
| Hpy99I | CGWCG | 1 cut(s) | 1272 |
| HpyCH4III | ACNGT | 8 cut(s) | 42, 63, 485, 1016, 1073, 1180, 1774, 1907 |
| HpyCH4IV | ACGT | 1 cut(s) | 353 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 755, 938, 968, 977, 1153, 1162, 1624 |
| HpyF3I | CTNAG | 8 cut(s) | 117, 386, 863, 1113, 1443, 1518, 1619, 1829 |
| HpySE526I | ACGT | 1 cut(s) | 353 |
| Kzo9I | GATC | 6 cut(s) | 820, 954, 1078, 1086, 1645, 2017 |
| LguI | GCTCTTC | 3 cut(s) | 160, 223, 375 |
| LmnI | GCTCC | 2 cut(s) | 555, 985 |
| Lsp1109I | GCAGC | 6 cut(s) | 742, 772, 916, 955, 1435, 2044 |
| LweI | GCATC | 7 cut(s) | 217, 350, 442, 1111, 1512, 1957, 1979 |
| MaeI | CTAG | 4 cut(s) | 438, 464, 489, 689 |
| MaeII | ACGT | 1 cut(s) | 353 |
| MaeIII | GTNAC | 4 cut(s) | 1090, 1174, 1583, 1824 |
| MalI | GATC | 6 cut(s) | 822, 956, 1080, 1088, 1647, 2019 |
| MbiI | CCGCTC | 1 cut(s) | 307 |
| MboI | GATC | 6 cut(s) | 820, 954, 1078, 1086, 1645, 2017 |
| MfeI | CAATTG | 2 cut(s) | 615, 1309 |
| MflI | RGATCY | 2 cut(s) | 1645, 2017 |
| MhlI | GDGCHC | 3 cut(s) | 218, 552, 717 |
| MlyI | GAGTC | 3 cut(s) | 332, 686, 1198 |
| MmeI | TCCRAC | 2 cut(s) | 626, 1847 |
| Mph1103I | ATGCAT | 2 cut(s) | 351, 1972 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1133 |
| MseI | TTAA | 6 cut(s) | 71, 434, 507, 1805, 1898, 2039 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1466, 1775 |
| MspA1I | CMGCKG | 2 cut(s) | 1607, 2035 |
| MspCI | CTTAAG | 1 cut(s) | 506 |
| MspI | CCGG | 2 cut(s) | 178, 1082 |
| MspR9I | CCNGG | 1 cut(s) | 1083 |
| MunI | CAATTG | 2 cut(s) | 615, 1309 |
| MvnI | CGCG | 1 cut(s) | 1156 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 755, 938, 968, 977, 1153, 1162, 1624 |
| NciI | CCSGG | 1 cut(s) | 1083 |
| NdeI | CATATG | 1 cut(s) | 149 |
| NdeII | GATC | 6 cut(s) | 820, 954, 1078, 1086, 1645, 2017 |
| NsiI | ATGCAT | 2 cut(s) | 351, 1972 |
| NspI | RCATGY | 1 cut(s) | 214 |
| PagI | TCATGA | 2 cut(s) | 109, 2048 |
| PciI | ACATGT | 1 cut(s) | 210 |
| PciSI | GCTCTTC | 3 cut(s) | 160, 223, 375 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1133 |
| PfeI | GAWTC | 5 cut(s) | 656, 1327, 1706, 1780, 2045 |
| PkrI | GCNGC | 7 cut(s) | 757, 787, 931, 970, 1393, 1450, 2034 |
| PleI | GAGTC | 3 cut(s) | 331, 685, 1198 |
| PpsI | GAGTC | 3 cut(s) | 331, 685, 1198 |
| PscI | ACATGT | 1 cut(s) | 210 |
| PshBI | ATTAAT | 1 cut(s) | 71 |
| PsiI | TTATAA | 1 cut(s) | 1044 |
| Psp124BI | GAGCTC | 1 cut(s) | 552 |
| PspPI | GGNCC | 2 cut(s) | 467, 1869 |
| PstI | CTGCAG | 2 cut(s) | 760, 1966 |
| PsuI | RGATCY | 2 cut(s) | 1645, 2017 |
| PvuII | CAGCTG | 2 cut(s) | 1607, 2035 |
| RsaI | GTAC | 7 cut(s) | 65, 168, 209, 575, 731, 807, 1018 |
| RsaNI | GTAC | 7 cut(s) | 64, 167, 208, 574, 730, 806, 1017 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1466, 1775 |
| SacI | GAGCTC | 1 cut(s) | 552 |
| SapI | GCTCTTC | 3 cut(s) | 160, 223, 375 |
| SaqAI | TTAA | 6 cut(s) | 71, 434, 507, 1805, 1898, 2039 |
| SatI | GCNGC | 7 cut(s) | 756, 786, 930, 969, 1392, 1449, 2033 |
| Sau3AI | GATC | 6 cut(s) | 820, 954, 1078, 1086, 1645, 2017 |
| Sau96I | GGNCC | 2 cut(s) | 467, 1869 |
| SchI | GAGTC | 3 cut(s) | 332, 686, 1198 |
| ScrFI | CCNGG | 1 cut(s) | 1083 |
| SduI | GDGCHC | 3 cut(s) | 218, 552, 717 |
| SfaNI | GCATC | 7 cut(s) | 217, 350, 442, 1111, 1512, 1957, 1979 |
| SfcI | CTRYAG | 7 cut(s) | 395, 756, 923, 1414, 1602, 1608, 1962 |
| SinI | GGWCC | 1 cut(s) | 1869 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1466, 1775 |
| SmlI | CTYRAG | 3 cut(s) | 80, 506, 1946 |
| SmoI | CTYRAG | 3 cut(s) | 80, 506, 1946 |
| SpeI | ACTAGT | 1 cut(s) | 437 |
| SsiI | CCGC | 6 cut(s) | 307, 470, 553, 983, 1392, 1710 |
| SspI | AATATT | 2 cut(s) | 652, 911 |
| SspMI | CTAG | 4 cut(s) | 438, 464, 489, 689 |
| SstI | GAGCTC | 1 cut(s) | 552 |
| StyD4I | CCNGG | 1 cut(s) | 1081 |
| TaaI | ACNGT | 8 cut(s) | 42, 63, 485, 1016, 1073, 1180, 1774, 1907 |
| TaiI | ACGT | 1 cut(s) | 356 |
| TaqI | TCGA | 3 cut(s) | 1137, 1270, 2003 |
| TatI | WGTACW | 5 cut(s) | 63, 166, 207, 573, 1016 |
| TauI | GCSGC | 1 cut(s) | 1394 |
| TfiI | GAWTC | 5 cut(s) | 656, 1327, 1706, 1780, 2045 |
| Tru1I | TTAA | 6 cut(s) | 71, 434, 507, 1805, 1898, 2039 |
| Tru9I | TTAA | 6 cut(s) | 71, 434, 507, 1805, 1898, 2039 |
| TscAI | CASTG | 8 cut(s) | 100, 256, 318, 490, 765, 823, 1777, 1912 |
| TseI | GCWGC | 6 cut(s) | 755, 785, 929, 968, 1448, 2032 |
| TspDTI | ATGAA | 6 cut(s) | 98, 147, 896, 1725, 1940, 2037 |
| TspRI | CASTG | 8 cut(s) | 100, 256, 318, 490, 765, 823, 1777, 1912 |
| Vha464I | CTTAAG | 1 cut(s) | 506 |
| VneI | GTGCAC | 1 cut(s) | 713 |
| VpaK11BI | GGWCC | 1 cut(s) | 1869 |
| VspI | ATTAAT | 1 cut(s) | 71 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 949 |
| XapI | RAATTY | 2 cut(s) | 1360, 1491 |
| XbaI | TCTAGA | 1 cut(s) | 688 |
| XceI | RCATGY | 1 cut(s) | 214 |
| XmiI | GTMKAC | 2 cut(s) | 394, 1289 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1133 |
| XspI | CTAG | 4 cut(s) | 438, 464, 489, 689 |
| Zsp2I | ATGCAT | 2 cut(s) | 351, 1972 |