pentatricopeptide repeat-containing protein At1g12700, mitochondrial
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_3 | PF13812 | 7 - 64 | 1.2e-08 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 15 - 47 | 3.8e-08 | PPR repeat |
| PPR_2 | PF13041 | 18 - 67 | 7.8e-14 | PPR repeat family |
| PPR_1 | PF12854 | 52 - 83 | 8.7e-12 | PPR repeat |
| PPR_3 | PF13812 | 52 - 91 | 3.8e-08 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 54 - 90 | 1.6e-09 | PPR repeat family |
| PPR_2 | PF13041 | 92 - 131 | 3.6e-08 | PPR repeat family |
| PPR_1 | PF12854 | 114 - 139 | 1.3e-07 | PPR repeat |
| PPR_1 | PF12854 | 172 - 203 | 1.2e-11 | PPR repeat |
| PPR_2 | PF13041 | 176 - 214 | 2.5e-12 | PPR repeat family |
| PPR | PF01535 | 177 - 206 | 2.6e-09 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 620 |
| AclWI | GGATC | 3 cut(s) | 73, 330, 475 |
| AcsI | RAATTY | 1 cut(s) | 573 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 272 |
| AgsI | TTSAA | 9 cut(s) | 37, 50, 70, 178, 367, 493, 578, 635, 666 |
| AhlI | ACTAGT | 1 cut(s) | 184 |
| AluBI | AGCT | 2 cut(s) | 12, 308 |
| AluI | AGCT | 2 cut(s) | 12, 308 |
| AlwI | GGATC | 3 cut(s) | 73, 330, 475 |
| Ama87I | CYCGRG | 1 cut(s) | 95 |
| AoxI | GGCC | 1 cut(s) | 616 |
| ApeKI | GCWGC | 2 cut(s) | 116, 221 |
| ApoI | RAATTY | 1 cut(s) | 573 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 488, 516, 593 |
| AspS9I | GGNCC | 1 cut(s) | 617 |
| AsuHPI | GGTGA | 1 cut(s) | 352 |
| AvaI | CYCGRG | 1 cut(s) | 95 |
| BanII | GRGCYC | 1 cut(s) | 428 |
| BbsI | GAAGAC | 1 cut(s) | 38 |
| BbvI | GCAGC | 2 cut(s) | 128, 208 |
| BccI | CCATC | 3 cut(s) | 238, 394, 545 |
| BceAI | ACGGC | 2 cut(s) | 100, 691 |
| BclI | TGATCA | 1 cut(s) | 459 |
| BcuI | ACTAGT | 1 cut(s) | 184 |
| BfaI | CTAG | 1 cut(s) | 185 |
| BisI | GCNGC | 2 cut(s) | 117, 222 |
| BlsI | GCNGC | 2 cut(s) | 118, 223 |
| BmeT110I | CYCGRG | 1 cut(s) | 95 |
| BmgT120I | GGNCC | 1 cut(s) | 617 |
| BmiI | GGNNCC | 1 cut(s) | 427 |
| BmsI | GCATC | 2 cut(s) | 248, 594 |
| BpiI | GAAGAC | 1 cut(s) | 38 |
| Bpu10I | CCTNAGC | 1 cut(s) | 111 |
| BsaJI | CCNNGG | 2 cut(s) | 82, 429 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 272 |
| BseDI | CCNNGG | 2 cut(s) | 82, 429 |
| BseGI | GGATG | 2 cut(s) | 263, 405 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 272 |
| BseMII | CTCAG | 1 cut(s) | 591 |
| BseXI | GCAGC | 2 cut(s) | 128, 208 |
| BshFI | GGCC | 1 cut(s) | 618 |
| BsiHKCI | CYCGRG | 1 cut(s) | 95 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 272 |
| BsnI | GGCC | 1 cut(s) | 618 |
| BsoBI | CYCGRG | 1 cut(s) | 95 |
| Bsp1286I | GDGCHC | 1 cut(s) | 428 |
| Bsp143I | GATC | 4 cut(s) | 78, 322, 459, 467 |
| Bsp19I | CCATGG | 1 cut(s) | 429 |
| BspACI | CCGC | 1 cut(s) | 620 |
| BspANI | GGCC | 1 cut(s) | 618 |
| BspCNI | CTCAG | 1 cut(s) | 592 |
| BspLI | GGNNCC | 1 cut(s) | 427 |
| BspPI | GGATC | 3 cut(s) | 73, 330, 475 |
| BssECI | CCNNGG | 2 cut(s) | 82, 429 |
| BssMI | GATC | 4 cut(s) | 78, 322, 459, 467 |
| BssT1I | CCWWGG | 1 cut(s) | 429 |
| Bst4CI | ACNGT | 2 cut(s) | 58, 155 |
| BstC8I | GCNNGC | 2 cut(s) | 263, 620 |
| BstDEI | CTNAG | 3 cut(s) | 111, 480, 600 |
| BstDSI | CCRYGG | 2 cut(s) | 82, 429 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 270 |
| BstF5I | GGATG | 2 cut(s) | 263, 405 |
| BstKTI | GATC | 4 cut(s) | 81, 325, 462, 470 |
| BstMBI | GATC | 4 cut(s) | 78, 322, 459, 467 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 116 |
| BstV1I | GCAGC | 2 cut(s) | 128, 208 |
| BstV2I | GAAGAC | 1 cut(s) | 38 |
| BstX2I | RGATCY | 1 cut(s) | 467 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 421 |
| BstYI | RGATCY | 1 cut(s) | 467 |
| BsuRI | GGCC | 1 cut(s) | 618 |
| BtgI | CCRYGG | 2 cut(s) | 82, 429 |
| BtsCI | GGATG | 2 cut(s) | 263, 405 |
| BtsIMutI | CAGTG | 1 cut(s) | 151 |
| Cac8I | GCNNGC | 2 cut(s) | 263, 620 |
| Cfr13I | GGNCC | 1 cut(s) | 617 |
| CviAII | CATG | 1 cut(s) | 430 |
| DdeI | CTNAG | 3 cut(s) | 111, 480, 600 |
| DpnI | GATC | 4 cut(s) | 80, 324, 461, 469 |
| DpnII | GATC | 4 cut(s) | 78, 322, 459, 467 |
| Eco130I | CCWWGG | 1 cut(s) | 429 |
| Eco24I | GRGCYC | 1 cut(s) | 428 |
| Eco88I | CYCGRG | 1 cut(s) | 95 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 270 |
| EcoRI | GAATTC | 1 cut(s) | 573 |
| EcoT14I | CCWWGG | 1 cut(s) | 429 |
| EcoT38I | GRGCYC | 1 cut(s) | 428 |
| ErhI | CCWWGG | 1 cut(s) | 429 |
| FaeI | CATG | 1 cut(s) | 433 |
| FaiI | YATR | 8 cut(s) | 272, 431, 444, 455, 509, 537, 642, 644 |
| FatI | CATG | 1 cut(s) | 429 |
| FauI | CCCGC | 1 cut(s) | 627 |
| FbaI | TGATCA | 1 cut(s) | 459 |
| Fnu4HI | GCNGC | 2 cut(s) | 117, 222 |
| FokI | GGATG | 2 cut(s) | 270, 412 |
| FriOI | GRGCYC | 1 cut(s) | 428 |
| Fsp4HI | GCNGC | 2 cut(s) | 117, 222 |
| FspBI | CTAG | 1 cut(s) | 185 |
| GluI | GCNGC | 2 cut(s) | 117, 222 |
| HaeIII | GGCC | 1 cut(s) | 618 |
| Hin1II | CATG | 1 cut(s) | 433 |
| HinfI | GANTC | 1 cut(s) | 100 |
| HphI | GGTGA | 1 cut(s) | 352 |
| Hpy188I | TCNGA | 3 cut(s) | 78, 240, 601 |
| Hpy188III | TCNNGA | 4 cut(s) | 95, 97, 578, 626 |
| HpyAV | CCTTC | 4 cut(s) | 76, 332, 373, 389 |
| HpyCH4III | ACNGT | 2 cut(s) | 58, 155 |
| HpyCH4V | TGCA | 5 cut(s) | 224, 282, 474, 561, 607 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 116 |
| HpyF3I | CTNAG | 3 cut(s) | 111, 480, 600 |
| Hsp92II | CATG | 1 cut(s) | 433 |
| Ksp22I | TGATCA | 1 cut(s) | 459 |
| Kzo9I | GATC | 4 cut(s) | 78, 322, 459, 467 |
| LmnI | GCTCC | 1 cut(s) | 431 |
| LpnPI | CCDG | 3 cut(s) | 427, 593, 639 |
| Lsp1109I | GCAGC | 2 cut(s) | 128, 208 |
| LweI | GCATC | 2 cut(s) | 248, 594 |
| MaeI | CTAG | 1 cut(s) | 185 |
| MaeIII | GTNAC | 2 cut(s) | 149, 169 |
| MalI | GATC | 4 cut(s) | 80, 324, 461, 469 |
| MboI | GATC | 4 cut(s) | 78, 322, 459, 467 |
| MboII | GAAGA | 6 cut(s) | 25, 38, 253, 260, 349, 496 |
| MflI | RGATCY | 1 cut(s) | 467 |
| MhlI | GDGCHC | 1 cut(s) | 428 |
| MluCI | AATT | 6 cut(s) | 38, 225, 522, 528, 573, 684 |
| MmeI | TCCRAC | 1 cut(s) | 300 |
| MnlI | CCTC | 2 cut(s) | 136, 306 |
| MroXI | GAANNNNTTC | 3 cut(s) | 488, 516, 593 |
| MseI | TTAA | 2 cut(s) | 656, 691 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 116 |
| NcoI | CCATGG | 1 cut(s) | 429 |
| NdeII | GATC | 4 cut(s) | 78, 322, 459, 467 |
| NlaIII | CATG | 1 cut(s) | 433 |
| NlaIV | GGNNCC | 1 cut(s) | 427 |
| NmuCI | GTSAC | 1 cut(s) | 149 |
| PaeR7I | CTCGAG | 1 cut(s) | 95 |
| PdmI | GAANNNNTTC | 3 cut(s) | 488, 516, 593 |
| PfeI | GAWTC | 1 cut(s) | 100 |
| PkrI | GCNGC | 2 cut(s) | 118, 223 |
| PspN4I | GGNNCC | 1 cut(s) | 427 |
| PspPI | GGNCC | 1 cut(s) | 617 |
| PsuI | RGATCY | 1 cut(s) | 467 |
| SaqAI | TTAA | 2 cut(s) | 656, 691 |
| SatI | GCNGC | 2 cut(s) | 117, 222 |
| Sau3AI | GATC | 4 cut(s) | 78, 322, 459, 467 |
| Sau96I | GGNCC | 1 cut(s) | 617 |
| SduI | GDGCHC | 1 cut(s) | 428 |
| SetI | ASST | 7 cut(s) | 14, 68, 310, 317, 343, 365, 536 |
| SfaNI | GCATC | 2 cut(s) | 248, 594 |
| Sfr274I | CTCGAG | 1 cut(s) | 95 |
| SlaI | CTCGAG | 1 cut(s) | 95 |
| SmlI | CTYRAG | 1 cut(s) | 95 |
| SmoI | CTYRAG | 1 cut(s) | 95 |
| SpeI | ACTAGT | 1 cut(s) | 184 |
| Sse9I | AATT | 6 cut(s) | 38, 225, 522, 528, 573, 684 |
| SsiI | CCGC | 1 cut(s) | 620 |
| SspMI | CTAG | 1 cut(s) | 185 |
| StyI | CCWWGG | 1 cut(s) | 429 |
| TaaI | ACNGT | 2 cut(s) | 58, 155 |
| TaqI | TCGA | 1 cut(s) | 96 |
| TasI | AATT | 6 cut(s) | 38, 225, 522, 528, 573, 684 |
| TfiI | GAWTC | 1 cut(s) | 100 |
| Tru1I | TTAA | 2 cut(s) | 656, 691 |
| Tru9I | TTAA | 2 cut(s) | 656, 691 |
| TscAI | CASTG | 1 cut(s) | 158 |
| TseFI | GTSAC | 1 cut(s) | 149 |
| TseI | GCWGC | 2 cut(s) | 116, 221 |
| Tsp45I | GTSAC | 1 cut(s) | 149 |
| TspDTI | ATGAA | 1 cut(s) | 431 |
| TspRI | CASTG | 1 cut(s) | 158 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 270 |
| XapI | RAATTY | 1 cut(s) | 573 |
| XhoI | CTCGAG | 1 cut(s) | 95 |
| XmnI | GAANNNNTTC | 3 cut(s) | 488, 516, 593 |
| XspI | CTAG | 1 cut(s) | 185 |