Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 74 - 122 | 3e-06 | PPR repeat family |
| PPR_3 | PF13812 | 141 - 198 | 3.2e-12 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 151 - 182 | 5.8e-10 | PPR repeat |
| PPR_2 | PF13041 | 153 - 202 | 2.9e-16 | PPR repeat family |
| PPR | PF01535 | 156 - 186 | 2.5e-06 | PPR repeat |
| PPR_1 | PF12854 | 184 - 216 | 1.3e-13 | PPR repeat |
| PPR_2 | PF13041 | 188 - 237 | 1.3e-18 | PPR repeat family |
| PPR | PF01535 | 191 - 221 | 4.7e-08 | PPR repeat |
| PPR_long | PF17177 | 204 - 302 | 2.4e-06 | Pentacotripeptide-repeat region of PRORP |
| PPR_3 | PF13812 | 212 - 270 | 3.5e-12 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 219 - 252 | 6.4e-12 | PPR repeat |
| PPR_2 | PF13041 | 223 - 272 | 6.1e-18 | PPR repeat family |
| PPR | PF01535 | 226 - 256 | 2.9e-07 | PPR repeat |
| MRP-S27 | PF10037 | 227 - 290 | 1.1e-07 | Mitochondrial 28S ribosomal protein S27 |
| PPR_1 | PF12854 | 254 - 286 | 2.2e-07 | PPR repeat |
| PPR_2 | PF13041 | 258 - 305 | 4.4e-11 | PPR repeat family |
| TPR_24 | PF23276 | 279 - 390 | 3.5e-08 | Fungal tetratrico peptide repeats |
| PPR_2 | PF13041 | 294 - 330 | 4.6e-06 | PPR repeat family |
| PPR | PF01535 | 296 - 325 | 2.2e-06 | PPR repeat |
| PPR_3 | PF13812 | 324 - 372 | 6.7e-09 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 329 - 377 | 1e-14 | PPR repeat family |
| PPR | PF01535 | 332 - 358 | 4e-06 | PPR repeat |
| PPR_1 | PF12854 | 360 - 391 | 1.1e-12 | PPR repeat |
| PPR_2 | PF13041 | 363 - 412 | 1.5e-17 | PPR repeat family |
| PPR | PF01535 | 366 - 395 | 2.6e-08 | PPR repeat |
| PPR_1 | PF12854 | 395 - 427 | 5e-07 | PPR repeat |
| PPR_2 | PF13041 | 406 - 446 | 4.1e-08 | PPR repeat family |
| PPR_long | PF17177 | 411 - 532 | 7.4e-06 | Pentacotripeptide-repeat region of PRORP |
| PPR_3 | PF13812 | 422 - 477 | 2.2e-06 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 434 - 482 | 9.5e-16 | PPR repeat family |
| PPR_3 | PF13812 | 461 - 513 | 6.8e-09 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 464 - 496 | 1.9e-11 | PPR repeat |
| PPR | PF01535 | 472 - 501 | 6.6e-09 | PPR repeat |
| PPR_2 | PF13041 | 476 - 516 | 5.6e-12 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1104 |
| AciI | CCGC | 2 cut(s) | 1133, 1682 |
| AcoI | YGGCCR | 1 cut(s) | 1183 |
| AcsI | RAATTY | 2 cut(s) | 420, 702 |
| AcuI | CTGAAG | 1 cut(s) | 370 |
| AfaI | GTAC | 1 cut(s) | 1573 |
| AluBI | AGCT | 5 cut(s) | 390, 731, 877, 1189, 1343 |
| AluI | AGCT | 5 cut(s) | 390, 731, 877, 1189, 1343 |
| Alw21I | GWGCWC | 1 cut(s) | 1340 |
| Alw26I | GTCTC | 2 cut(s) | 1132, 1553 |
| Alw44I | GTGCAC | 1 cut(s) | 1336 |
| AoxI | GGCC | 4 cut(s) | 445, 715, 1183, 1225 |
| ApaLI | GTGCAC | 1 cut(s) | 1336 |
| ApeKI | GCWGC | 2 cut(s) | 413, 518 |
| ApoI | RAATTY | 2 cut(s) | 420, 702 |
| AseI | ATTAAT | 1 cut(s) | 614 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 201, 635, 1083 |
| AsuHPI | GGTGA | 4 cut(s) | 418, 466, 766, 775 |
| AxyI | CCTNAGG | 1 cut(s) | 408 |
| BaeGI | GKGCMC | 1 cut(s) | 1340 |
| BalI | TGGCCA | 1 cut(s) | 1185 |
| BanII | GRGCYC | 1 cut(s) | 977 |
| Bbv12I | GWGCWC | 1 cut(s) | 1340 |
| BbvI | GCAGC | 2 cut(s) | 400, 505 |
| BccI | CCATC | 7 cut(s) | 144, 496, 535, 593, 817, 1112, 1217 |
| BceAI | ACGGC | 1 cut(s) | 1269 |
| BcoDI | GTCTC | 2 cut(s) | 1132, 1553 |
| BfaI | CTAG | 2 cut(s) | 140, 1175 |
| BfmI | CTRYAG | 1 cut(s) | 1611 |
| BglII | AGATCT | 1 cut(s) | 1366 |
| BisI | GCNGC | 3 cut(s) | 414, 519, 1682 |
| BlsI | GCNGC | 3 cut(s) | 415, 520, 1683 |
| BmsI | GCATC | 4 cut(s) | 166, 1161, 1606, 1628 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 70, 102, 164, 196 |
| BpmI | CTGGAG | 1 cut(s) | 81 |
| BpuEI | CTTGAG | 1 cut(s) | 1616 |
| BsaJI | CCNNGG | 1 cut(s) | 1537 |
| Bse21I | CCTNAGG | 1 cut(s) | 408 |
| Bse3DI | GCAATG | 2 cut(s) | 513, 633 |
| BseDI | CCNNGG | 1 cut(s) | 1537 |
| BseGI | GGATG | 7 cut(s) | 88, 181, 285, 560, 828, 1184, 1505 |
| BseMI | GCAATG | 2 cut(s) | 513, 633 |
| BseMII | CTCAG | 5 cut(s) | 254, 399, 654, 1181, 1469 |
| BseRI | GAGGAG | 1 cut(s) | 12 |
| BseSI | GKGCMC | 1 cut(s) | 1340 |
| BseXI | GCAGC | 2 cut(s) | 400, 505 |
| BsgI | GTGCAG | 1 cut(s) | 399 |
| BshFI | GGCC | 4 cut(s) | 447, 717, 1185, 1227 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1340 |
| BslFI | GGGAC | 1 cut(s) | 1503 |
| BsmAI | GTCTC | 2 cut(s) | 1132, 1553 |
| BsmFI | GGGAC | 1 cut(s) | 1503 |
| BsnI | GGCC | 4 cut(s) | 447, 717, 1185, 1227 |
| Bsp1286I | GDGCHC | 2 cut(s) | 977, 1340 |
| Bsp143I | GATC | 3 cut(s) | 955, 1366, 1666 |
| BspACI | CCGC | 2 cut(s) | 1133, 1682 |
| BspANI | GGCC | 4 cut(s) | 447, 717, 1185, 1227 |
| BspCNI | CTCAG | 5 cut(s) | 253, 400, 653, 1180, 1470 |
| BspMAI | CTGCAG | 1 cut(s) | 1615 |
| BsrDI | GCAATG | 2 cut(s) | 513, 633 |
| BssECI | CCNNGG | 1 cut(s) | 1537 |
| BssMI | GATC | 3 cut(s) | 955, 1366, 1666 |
| Bst4CI | ACNGT | 2 cut(s) | 596, 911 |
| Bst6I | CTCTTC | 2 cut(s) | 641, 1376 |
| BstC8I | GCNNGC | 1 cut(s) | 1187 |
| BstDEI | CTNAG | 6 cut(s) | 240, 400, 408, 640, 1167, 1478 |
| BstF5I | GGATG | 7 cut(s) | 88, 181, 285, 560, 828, 1184, 1505 |
| BstKTI | GATC | 3 cut(s) | 958, 1369, 1669 |
| BstMAI | GTCTC | 2 cut(s) | 1132, 1553 |
| BstMBI | GATC | 3 cut(s) | 955, 1366, 1666 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 714 |
| BstSFI | CTRYAG | 1 cut(s) | 1611 |
| BstSLI | GKGCMC | 1 cut(s) | 1340 |
| BstV1I | GCAGC | 2 cut(s) | 400, 505 |
| BstX2I | RGATCY | 1 cut(s) | 1366 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 436, 844 |
| BstYI | RGATCY | 1 cut(s) | 1366 |
| Bsu36I | CCTNAGG | 1 cut(s) | 408 |
| BsuRI | GGCC | 4 cut(s) | 447, 717, 1185, 1227 |
| BtsCI | GGATG | 7 cut(s) | 88, 181, 285, 560, 828, 1184, 1505 |
| Cac8I | GCNNGC | 1 cut(s) | 1187 |
| CseI | GACGC | 1 cut(s) | 1058 |
| Csp6I | GTAC | 1 cut(s) | 1572 |
| CviAII | CATG | 6 cut(s) | 109, 184, 194, 853, 1448, 1566 |
| CviQI | GTAC | 1 cut(s) | 1572 |
| DdeI | CTNAG | 6 cut(s) | 240, 400, 408, 640, 1167, 1478 |
| DpnI | GATC | 3 cut(s) | 957, 1368, 1668 |
| DpnII | GATC | 3 cut(s) | 955, 1366, 1666 |
| EaeI | YGGCCR | 1 cut(s) | 1183 |
| Eam1104I | CTCTTC | 2 cut(s) | 641, 1376 |
| EarI | CTCTTC | 2 cut(s) | 641, 1376 |
| Eco24I | GRGCYC | 1 cut(s) | 977 |
| Eco32I | GATATC | 1 cut(s) | 83 |
| Eco57I | CTGAAG | 1 cut(s) | 370 |
| Eco81I | CCTNAGG | 1 cut(s) | 408 |
| EcoRV | GATATC | 1 cut(s) | 83 |
| EcoT22I | ATGCAT | 1 cut(s) | 1621 |
| EcoT38I | GRGCYC | 1 cut(s) | 977 |
| FaeI | CATG | 6 cut(s) | 112, 187, 197, 856, 1451, 1569 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1281, 1313, 1578, 1610 |
| FaqI | GGGAC | 1 cut(s) | 1503 |
| FatI | CATG | 6 cut(s) | 108, 183, 193, 852, 1447, 1565 |
| FauI | CCCGC | 1 cut(s) | 1126 |
| FauNDI | CATATG | 1 cut(s) | 1074 |
| Fnu4HI | GCNGC | 3 cut(s) | 414, 519, 1682 |
| FokI | GGATG | 7 cut(s) | 75, 188, 272, 567, 835, 1191, 1512 |
| FriOI | GRGCYC | 1 cut(s) | 977 |
| Fsp4HI | GCNGC | 3 cut(s) | 414, 519, 1682 |
| FspBI | CTAG | 2 cut(s) | 140, 1175 |
| GluI | GCNGC | 3 cut(s) | 414, 519, 1682 |
| GsuI | CTGGAG | 1 cut(s) | 81 |
| HaeIII | GGCC | 4 cut(s) | 447, 717, 1185, 1227 |
| HgaI | GACGC | 1 cut(s) | 1058 |
| Hin1II | CATG | 6 cut(s) | 112, 187, 197, 856, 1451, 1569 |
| HincII | GTYRAC | 1 cut(s) | 254 |
| HindII | GTYRAC | 1 cut(s) | 254 |
| HinfI | GANTC | 6 cut(s) | 373, 694, 859, 1355, 1429, 1437 |
| HphI | GGTGA | 4 cut(s) | 418, 466, 766, 775 |
| Hpy166II | GTNNAC | 4 cut(s) | 254, 850, 1312, 1338 |
| Hpy188I | TCNGA | 6 cut(s) | 243, 643, 993, 1170, 1412, 1538 |
| Hpy188III | TCNNGA | 4 cut(s) | 60, 126, 773, 1586 |
| Hpy8I | GTNNAC | 4 cut(s) | 254, 850, 1312, 1338 |
| Hpy99I | CGWCG | 1 cut(s) | 677 |
| HpyAV | CCTTC | 5 cut(s) | 231, 434, 796, 1322, 1648 |
| HpyCH4III | ACNGT | 2 cut(s) | 596, 911 |
| HpyCH4IV | ACGT | 1 cut(s) | 672 |
| HpyCH4V | TGCA | 8 cut(s) | 416, 498, 708, 1338, 1361, 1518, 1613, 1619 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 714 |
| HpyF3I | CTNAG | 6 cut(s) | 240, 400, 408, 640, 1167, 1478 |
| HpySE526I | ACGT | 1 cut(s) | 672 |
| Hsp92II | CATG | 6 cut(s) | 112, 187, 197, 856, 1451, 1569 |
| Kzo9I | GATC | 3 cut(s) | 955, 1366, 1666 |
| LmnI | GCTCC | 3 cut(s) | 62, 328, 670 |
| LpnPI | CCDG | 8 cut(s) | 45, 420, 786, 1199, 1241, 1253, 1329, 1655 |
| Lsp1109I | GCAGC | 2 cut(s) | 400, 505 |
| LweI | GCATC | 4 cut(s) | 166, 1161, 1606, 1628 |
| MaeI | CTAG | 2 cut(s) | 140, 1175 |
| MaeII | ACGT | 1 cut(s) | 672 |
| MaeIII | GTNAC | 6 cut(s) | 466, 676, 781, 911, 998, 1232 |
| MalI | GATC | 3 cut(s) | 957, 1368, 1668 |
| MboI | GATC | 3 cut(s) | 955, 1366, 1666 |
| MboII | GAAGA | 4 cut(s) | 550, 557, 628, 1363 |
| MflI | RGATCY | 1 cut(s) | 1366 |
| MhlI | GDGCHC | 2 cut(s) | 977, 1340 |
| MlsI | TGGCCA | 1 cut(s) | 1185 |
| MluNI | TGGCCA | 1 cut(s) | 1185 |
| MlyI | GAGTC | 1 cut(s) | 1431 |
| Mox20I | TGGCCA | 1 cut(s) | 1185 |
| Mph1103I | ATGCAT | 1 cut(s) | 1621 |
| MroXI | GAANNNNTTC | 3 cut(s) | 201, 635, 1083 |
| MscI | TGGCCA | 1 cut(s) | 1185 |
| MseI | TTAA | 8 cut(s) | 614, 813, 984, 1011, 1269, 1299, 1454, 1547 |
| MslI | CAYNNNNRTG | 2 cut(s) | 431, 1424 |
| Msp20I | TGGCCA | 1 cut(s) | 1185 |
| MspA1I | CMGCKG | 2 cut(s) | 1343, 1684 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 714 |
| NdeI | CATATG | 1 cut(s) | 1074 |
| NdeII | GATC | 3 cut(s) | 955, 1366, 1666 |
| NlaIII | CATG | 6 cut(s) | 112, 187, 197, 856, 1451, 1569 |
| NmuCI | GTSAC | 1 cut(s) | 781 |
| NsiI | ATGCAT | 1 cut(s) | 1621 |
| PdmI | GAANNNNTTC | 3 cut(s) | 201, 635, 1083 |
| PfeI | GAWTC | 5 cut(s) | 373, 694, 859, 1355, 1429 |
| PflFI | GACNNNGTC | 1 cut(s) | 1440 |
| PkrI | GCNGC | 3 cut(s) | 415, 520, 1683 |
| PleI | GAGTC | 1 cut(s) | 1431 |
| PpsI | GAGTC | 1 cut(s) | 1431 |
| PshBI | ATTAAT | 1 cut(s) | 614 |
| PsiI | TTATAA | 1 cut(s) | 1104 |
| PstI | CTGCAG | 1 cut(s) | 1615 |
| PsuI | RGATCY | 1 cut(s) | 1366 |
| PsyI | GACNNNGTC | 1 cut(s) | 1440 |
| PvuII | CAGCTG | 1 cut(s) | 1343 |
| RsaI | GTAC | 1 cut(s) | 1573 |
| RsaNI | GTAC | 1 cut(s) | 1572 |
| RseI | CAYNNNNRTG | 2 cut(s) | 431, 1424 |
| SaqAI | TTAA | 8 cut(s) | 614, 813, 984, 1011, 1269, 1299, 1454, 1547 |
| SatI | GCNGC | 3 cut(s) | 414, 519, 1682 |
| Sau3AI | GATC | 3 cut(s) | 955, 1366, 1666 |
| SchI | GAGTC | 1 cut(s) | 1431 |
| SduI | GDGCHC | 2 cut(s) | 977, 1340 |
| SfaNI | GCATC | 4 cut(s) | 166, 1161, 1606, 1628 |
| SfcI | CTRYAG | 1 cut(s) | 1611 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 431, 1424 |
| SmlI | CTYRAG | 1 cut(s) | 1595 |
| SmoI | CTYRAG | 1 cut(s) | 1595 |
| SsiI | CCGC | 2 cut(s) | 1133, 1682 |
| SspI | AATATT | 2 cut(s) | 157, 1303 |
| SspMI | CTAG | 2 cut(s) | 140, 1175 |
| TaaI | ACNGT | 2 cut(s) | 596, 911 |
| TaiI | ACGT | 1 cut(s) | 675 |
| TaqI | TCGA | 3 cut(s) | 148, 591, 1652 |
| TauI | GCSGC | 1 cut(s) | 1684 |
| TfiI | GAWTC | 5 cut(s) | 373, 694, 859, 1355, 1429 |
| Tru1I | TTAA | 8 cut(s) | 614, 813, 984, 1011, 1269, 1299, 1454, 1547 |
| Tru9I | TTAA | 8 cut(s) | 614, 813, 984, 1011, 1269, 1299, 1454, 1547 |
| TseFI | GTSAC | 1 cut(s) | 781 |
| TseI | GCWGC | 2 cut(s) | 413, 518 |
| Tsp45I | GTSAC | 1 cut(s) | 781 |
| TspDTI | ATGAA | 7 cut(s) | 38, 97, 110, 210, 636, 644, 762 |
| TspGWI | ACGGA | 2 cut(s) | 385, 1029 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1440 |
| VneI | GTGCAC | 1 cut(s) | 1336 |
| VspI | ATTAAT | 1 cut(s) | 614 |
| XapI | RAATTY | 2 cut(s) | 420, 702 |
| XmnI | GAANNNNTTC | 3 cut(s) | 201, 635, 1083 |
| XspI | CTAG | 2 cut(s) | 140, 1175 |
| Zsp2I | ATGCAT | 1 cut(s) | 1621 |