Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_3 | PF13812 | 3 - 55 | 4.4e-10 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 4 - 36 | 6.8e-12 | PPR repeat |
| PPR_2 | PF13041 | 8 - 57 | 1.4e-17 | PPR repeat family |
| PPR | PF01535 | 11 - 41 | 1.9e-07 | PPR repeat |
| MRP-S27 | PF10037 | 15 - 74 | 4.1e-08 | Mitochondrial 28S ribosomal protein S27 |
| PPR_1 | PF12854 | 40 - 71 | 1.6e-09 | PPR repeat |
| PPR_2 | PF13041 | 43 - 82 | 1.5e-07 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 108 |
| AfaI | GTAC | 1 cut(s) | 238 |
| AgsI | TTSAA | 2 cut(s) | 145, 206 |
| AluBI | AGCT | 1 cut(s) | 86 |
| AluI | AGCT | 1 cut(s) | 86 |
| AlwI | GGATC | 1 cut(s) | 108 |
| AoxI | GGCC | 1 cut(s) | 70 |
| AsuHPI | GGTGA | 1 cut(s) | 130 |
| BccI | CCATC | 2 cut(s) | 167, 172 |
| BclI | TGATCA | 1 cut(s) | 3 |
| BfaI | CTAG | 1 cut(s) | 234 |
| BsaAI | YACGTR | 1 cut(s) | 246 |
| Bse1I | ACTGG | 1 cut(s) | 73 |
| BseGI | GGATG | 2 cut(s) | 178, 183 |
| BseNI | ACTGG | 1 cut(s) | 73 |
| BshFI | GGCC | 1 cut(s) | 72 |
| BsnI | GGCC | 1 cut(s) | 72 |
| Bsp143I | GATC | 2 cut(s) | 3, 100 |
| BspANI | GGCC | 1 cut(s) | 72 |
| BspPI | GGATC | 1 cut(s) | 108 |
| BsrI | ACTGG | 1 cut(s) | 73 |
| BssMI | GATC | 2 cut(s) | 3, 100 |
| BstBAI | YACGTR | 1 cut(s) | 246 |
| BstF5I | GGATG | 2 cut(s) | 178, 183 |
| BstKTI | GATC | 2 cut(s) | 6, 103 |
| BstMBI | GATC | 2 cut(s) | 3, 100 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 69 |
| BstSNI | TACGTA | 1 cut(s) | 246 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 199 |
| BsuRI | GGCC | 1 cut(s) | 72 |
| BtsCI | GGATG | 2 cut(s) | 178, 183 |
| BtsIMutI | CAGTG | 1 cut(s) | 80 |
| Csp6I | GTAC | 1 cut(s) | 237 |
| CviJI | RGCY | 4 cut(s) | 72, 86, 191, 232 |
| CviKI_1 | RGCY | 4 cut(s) | 72, 86, 191, 232 |
| CviQI | GTAC | 1 cut(s) | 237 |
| DpnI | GATC | 2 cut(s) | 5, 102 |
| DpnII | GATC | 2 cut(s) | 3, 100 |
| Eco105I | TACGTA | 1 cut(s) | 246 |
| FaiI | YATR | 3 cut(s) | 18, 219, 225 |
| FbaI | TGATCA | 1 cut(s) | 3 |
| FokI | GGATG | 2 cut(s) | 185, 190 |
| FspBI | CTAG | 1 cut(s) | 234 |
| HaeIII | GGCC | 1 cut(s) | 72 |
| HinfI | GANTC | 1 cut(s) | 214 |
| HphI | GGTGA | 1 cut(s) | 130 |
| HpyAV | CCTTC | 2 cut(s) | 110, 151 |
| HpyCH4IV | ACGT | 1 cut(s) | 245 |
| HpyCH4V | TGCA | 1 cut(s) | 63 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 69 |
| HpySE526I | ACGT | 1 cut(s) | 245 |
| Ksp22I | TGATCA | 1 cut(s) | 3 |
| Kzo9I | GATC | 2 cut(s) | 3, 100 |
| LmnI | GCTCC | 1 cut(s) | 25 |
| LpnPI | CCDG | 2 cut(s) | 86, 205 |
| MaeI | CTAG | 1 cut(s) | 234 |
| MaeII | ACGT | 1 cut(s) | 245 |
| MaeIII | GTNAC | 1 cut(s) | 31 |
| MalI | GATC | 2 cut(s) | 5, 102 |
| MboI | GATC | 2 cut(s) | 3, 100 |
| MboII | GAAGA | 1 cut(s) | 127 |
| MluCI | AATT | 1 cut(s) | 64 |
| MmeI | TCCRAC | 1 cut(s) | 78 |
| MnlI | CCTC | 1 cut(s) | 84 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 69 |
| NdeII | GATC | 2 cut(s) | 3, 100 |
| NmuCI | GTSAC | 1 cut(s) | 31 |
| PfeI | GAWTC | 1 cut(s) | 214 |
| Ppu21I | YACGTR | 1 cut(s) | 246 |
| RsaI | GTAC | 1 cut(s) | 238 |
| RsaNI | GTAC | 1 cut(s) | 237 |
| Sau3AI | GATC | 2 cut(s) | 3, 100 |
| SetI | ASST | 5 cut(s) | 88, 95, 121, 143, 248 |
| SgeI | CNNG | 4 cut(s) | 85, 102, 196, 204 |
| SnaBI | TACGTA | 1 cut(s) | 246 |
| Sse9I | AATT | 1 cut(s) | 64 |
| SspMI | CTAG | 1 cut(s) | 234 |
| TaiI | ACGT | 1 cut(s) | 248 |
| TasI | AATT | 1 cut(s) | 64 |
| TfiI | GAWTC | 1 cut(s) | 214 |
| TscAI | CASTG | 1 cut(s) | 80 |
| TseFI | GTSAC | 1 cut(s) | 31 |
| Tsp45I | GTSAC | 1 cut(s) | 31 |
| TspDTI | ATGAA | 1 cut(s) | 206 |
| TspRI | CASTG | 1 cut(s) | 80 |
| XspI | CTAG | 1 cut(s) | 234 |