Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 47 - 96 | 2.8e-06 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcuI | CTGAAG | 1 cut(s) | 26 |
| AcyI | GRCGYC | 1 cut(s) | 130 |
| AgsI | TTSAA | 6 cut(s) | 103, 125, 214, 292, 342, 375 |
| AluBI | AGCT | 1 cut(s) | 317 |
| AluI | AGCT | 1 cut(s) | 317 |
| Ama87I | CYCGRG | 1 cut(s) | 59 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 107, 120 |
| AspLEI | GCGC | 1 cut(s) | 244 |
| AspS9I | GGNCC | 1 cut(s) | 63 |
| AsuC2I | CCSGG | 2 cut(s) | 60, 61 |
| AsuHPI | GGTGA | 1 cut(s) | 357 |
| AvaI | CYCGRG | 1 cut(s) | 59 |
| AvaII | GGWCC | 1 cut(s) | 63 |
| BanII | GRGCYC | 1 cut(s) | 60 |
| BceAI | ACGGC | 1 cut(s) | 294 |
| BcnI | CCSGG | 2 cut(s) | 60, 61 |
| BfaI | CTAG | 2 cut(s) | 51, 314 |
| Bme1390I | CCNGG | 2 cut(s) | 60, 61 |
| Bme18I | GGWCC | 1 cut(s) | 63 |
| BmeT110I | CYCGRG | 1 cut(s) | 59 |
| BmgT120I | GGNCC | 1 cut(s) | 63 |
| BmiI | GGNNCC | 1 cut(s) | 64 |
| BmrFI | CCNGG | 2 cut(s) | 60, 61 |
| BpuMI | CCSGG | 2 cut(s) | 60, 61 |
| BsaHI | GRCGYC | 1 cut(s) | 130 |
| BsaJI | CCNNGG | 1 cut(s) | 59 |
| BseDI | CCNNGG | 1 cut(s) | 59 |
| BseMII | CTCAG | 2 cut(s) | 173, 274 |
| BsiHKCI | CYCGRG | 1 cut(s) | 59 |
| BsiSI | CCGG | 1 cut(s) | 60 |
| BslFI | GGGAC | 1 cut(s) | 76 |
| BsmFI | GGGAC | 1 cut(s) | 76 |
| BsoBI | CYCGRG | 1 cut(s) | 59 |
| Bsp1286I | GDGCHC | 1 cut(s) | 60 |
| BspCNI | CTCAG | 2 cut(s) | 172, 273 |
| BspLI | GGNNCC | 1 cut(s) | 64 |
| BssECI | CCNNGG | 1 cut(s) | 59 |
| BssNI | GRCGYC | 1 cut(s) | 130 |
| BstACI | GRCGYC | 1 cut(s) | 130 |
| BstDEI | CTNAG | 2 cut(s) | 159, 260 |
| BstHHI | GCGC | 1 cut(s) | 244 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 127, 136 |
| BstSCI | CCNGG | 2 cut(s) | 58, 59 |
| CfoI | GCGC | 1 cut(s) | 244 |
| Cfr13I | GGNCC | 1 cut(s) | 63 |
| Cfr9I | CCCGGG | 1 cut(s) | 59 |
| CseI | GACGC | 1 cut(s) | 119 |
| CviJI | RGCY | 3 cut(s) | 58, 309, 317 |
| CviKI_1 | RGCY | 3 cut(s) | 58, 309, 317 |
| DdeI | CTNAG | 2 cut(s) | 159, 260 |
| Eco24I | GRGCYC | 1 cut(s) | 60 |
| Eco47I | GGWCC | 1 cut(s) | 63 |
| Eco57I | CTGAAG | 1 cut(s) | 26 |
| Eco88I | CYCGRG | 1 cut(s) | 59 |
| EcoO109I | RGGNCCY | 1 cut(s) | 63 |
| EcoT38I | GRGCYC | 1 cut(s) | 60 |
| FaiI | YATR | 5 cut(s) | 96, 198, 255, 297, 299 |
| FaqI | GGGAC | 1 cut(s) | 76 |
| FauNDI | CATATG | 1 cut(s) | 297 |
| FriOI | GRGCYC | 1 cut(s) | 60 |
| FspBI | CTAG | 2 cut(s) | 51, 314 |
| GlaI | GCGC | 1 cut(s) | 243 |
| HapII | CCGG | 1 cut(s) | 60 |
| HgaI | GACGC | 1 cut(s) | 119 |
| HhaI | GCGC | 1 cut(s) | 244 |
| Hin1I | GRCGYC | 1 cut(s) | 130 |
| Hin6I | GCGC | 1 cut(s) | 242 |
| HinP1I | GCGC | 1 cut(s) | 242 |
| HincII | GTYRAC | 2 cut(s) | 173, 355 |
| HindII | GTYRAC | 2 cut(s) | 173, 355 |
| HinfI | GANTC | 2 cut(s) | 169, 292 |
| HpaII | CCGG | 1 cut(s) | 60 |
| HphI | GGTGA | 1 cut(s) | 357 |
| Hpy166II | GTNNAC | 2 cut(s) | 173, 355 |
| Hpy188I | TCNGA | 3 cut(s) | 45, 162, 383 |
| Hpy8I | GTNNAC | 2 cut(s) | 173, 355 |
| HpyAV | CCTTC | 4 cut(s) | 21, 97, 150, 381 |
| HpyCH4V | TGCA | 1 cut(s) | 200 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 127, 136 |
| HpyF3I | CTNAG | 2 cut(s) | 159, 260 |
| Hsp92I | GRCGYC | 1 cut(s) | 130 |
| HspAI | GCGC | 1 cut(s) | 242 |
| LpnPI | CCDG | 2 cut(s) | 73, 258 |
| MaeI | CTAG | 2 cut(s) | 51, 314 |
| MaeIII | GTNAC | 2 cut(s) | 3, 363 |
| MboII | GAAGA | 3 cut(s) | 29, 32, 330 |
| MfeI | CAATTG | 1 cut(s) | 274 |
| MhlI | GDGCHC | 1 cut(s) | 60 |
| MluCI | AATT | 6 cut(s) | 82, 182, 237, 274, 334, 343 |
| MlyI | GAGTC | 1 cut(s) | 178 |
| MnlI | CCTC | 2 cut(s) | 76, 144 |
| MroXI | GAANNNNTTC | 2 cut(s) | 107, 120 |
| MslI | CAYNNNNRTG | 1 cut(s) | 195 |
| MspI | CCGG | 1 cut(s) | 60 |
| MspR9I | CCNGG | 2 cut(s) | 60, 61 |
| MunI | CAATTG | 1 cut(s) | 274 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 127, 136 |
| NciI | CCSGG | 2 cut(s) | 60, 61 |
| NdeI | CATATG | 1 cut(s) | 297 |
| NlaIV | GGNNCC | 1 cut(s) | 64 |
| NmuCI | GTSAC | 2 cut(s) | 3, 363 |
| PdmI | GAANNNNTTC | 2 cut(s) | 107, 120 |
| PfeI | GAWTC | 1 cut(s) | 292 |
| PleI | GAGTC | 1 cut(s) | 177 |
| PpsI | GAGTC | 1 cut(s) | 177 |
| PpuMI | RGGWCCY | 1 cut(s) | 63 |
| Psp5II | RGGWCCY | 1 cut(s) | 63 |
| PspN4I | GGNNCC | 1 cut(s) | 64 |
| PspPI | GGNCC | 1 cut(s) | 63 |
| PspPPI | RGGWCCY | 1 cut(s) | 63 |
| RseI | CAYNNNNRTG | 1 cut(s) | 195 |
| Sau96I | GGNCC | 1 cut(s) | 63 |
| SchI | GAGTC | 1 cut(s) | 178 |
| ScrFI | CCNGG | 2 cut(s) | 60, 61 |
| SduI | GDGCHC | 1 cut(s) | 60 |
| SetI | ASST | 6 cut(s) | 13, 68, 90, 108, 319, 373 |
| SinI | GGWCC | 1 cut(s) | 63 |
| SmaI | CCCGGG | 1 cut(s) | 61 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 195 |
| Sse9I | AATT | 6 cut(s) | 82, 182, 237, 274, 334, 343 |
| SspMI | CTAG | 2 cut(s) | 51, 314 |
| StyD4I | CCNGG | 2 cut(s) | 58, 59 |
| TaqI | TCGA | 2 cut(s) | 111, 235 |
| TasI | AATT | 6 cut(s) | 82, 182, 237, 274, 334, 343 |
| TfiI | GAWTC | 1 cut(s) | 292 |
| TseFI | GTSAC | 2 cut(s) | 3, 363 |
| Tsp45I | GTSAC | 2 cut(s) | 3, 363 |
| TspDTI | ATGAA | 1 cut(s) | 129 |
| TspGWI | ACGGA | 1 cut(s) | 140 |
| TspMI | CCCGGG | 1 cut(s) | 59 |
| VpaK11BI | GGWCC | 1 cut(s) | 63 |
| XmaI | CCCGGG | 1 cut(s) | 59 |
| XmnI | GAANNNNTTC | 2 cut(s) | 107, 120 |
| XspI | CTAG | 2 cut(s) | 51, 314 |