Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 31 - 78 | 1.7e-12 | PPR repeat family |
| PPR_1 | PF12854 | 62 - 93 | 3.3e-12 | PPR repeat |
| PPR_3 | PF13812 | 62 - 109 | 7.6e-07 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 64 - 112 | 4.1e-15 | PPR repeat family |
| PPR | PF01535 | 68 - 97 | 2.6e-10 | PPR repeat |
| PPR_2 | PF13041 | 102 - 146 | 1.4e-08 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 231 |
| AciI | CCGC | 2 cut(s) | 150, 470 |
| AclWI | GGATC | 1 cut(s) | 449 |
| AflIII | ACRYGT | 1 cut(s) | 348 |
| AgsI | TTSAA | 7 cut(s) | 7, 119, 146, 188, 221, 251, 374 |
| AjiI | CACGTC | 1 cut(s) | 351 |
| AluBI | AGCT | 1 cut(s) | 134 |
| AluI | AGCT | 1 cut(s) | 134 |
| Alw26I | GTCTC | 1 cut(s) | 358 |
| AlwI | GGATC | 1 cut(s) | 449 |
| AoxI | GGCC | 1 cut(s) | 16 |
| BccI | CCATC | 1 cut(s) | 8 |
| BceAI | ACGGC | 1 cut(s) | 60 |
| BcoDI | GTCTC | 1 cut(s) | 358 |
| BglII | AGATCT | 1 cut(s) | 157 |
| BisI | GCNGC | 1 cut(s) | 470 |
| BlsI | GCNGC | 1 cut(s) | 471 |
| BmgBI | CACGTC | 1 cut(s) | 351 |
| BmsI | GCATC | 3 cut(s) | 278, 394, 416 |
| BpuEI | CTTGAG | 1 cut(s) | 404 |
| BsaJI | CCNNGG | 1 cut(s) | 325 |
| Bse1I | ACTGG | 1 cut(s) | 360 |
| BseDI | CCNNGG | 1 cut(s) | 325 |
| BseGI | GGATG | 1 cut(s) | 293 |
| BseMII | CTCAG | 1 cut(s) | 257 |
| BseNI | ACTGG | 1 cut(s) | 360 |
| BshFI | GGCC | 1 cut(s) | 18 |
| BsiSI | CCGG | 1 cut(s) | 458 |
| BsmAI | GTCTC | 1 cut(s) | 358 |
| BsnI | GGCC | 1 cut(s) | 18 |
| Bsp143I | GATC | 2 cut(s) | 157, 454 |
| BspACI | CCGC | 2 cut(s) | 150, 470 |
| BspANI | GGCC | 1 cut(s) | 18 |
| BspCNI | CTCAG | 1 cut(s) | 258 |
| BspPI | GGATC | 1 cut(s) | 449 |
| BsrI | ACTGG | 1 cut(s) | 360 |
| BssECI | CCNNGG | 1 cut(s) | 325 |
| BssMI | GATC | 2 cut(s) | 157, 454 |
| Bst4CI | ACNGT | 1 cut(s) | 211 |
| Bst6I | CTCTTC | 1 cut(s) | 167 |
| BstDEI | CTNAG | 1 cut(s) | 266 |
| BstF5I | GGATG | 1 cut(s) | 293 |
| BstKTI | GATC | 2 cut(s) | 160, 457 |
| BstMAI | GTCTC | 1 cut(s) | 358 |
| BstMBI | GATC | 2 cut(s) | 157, 454 |
| BstX2I | RGATCY | 2 cut(s) | 157, 454 |
| BstYI | RGATCY | 2 cut(s) | 157, 454 |
| BsuRI | GGCC | 1 cut(s) | 18 |
| BtrI | CACGTC | 1 cut(s) | 351 |
| BtsCI | GGATG | 1 cut(s) | 293 |
| BtsIMutI | CAGTG | 2 cut(s) | 207, 353 |
| CviAII | CATG | 1 cut(s) | 236 |
| CviJI | RGCY | 6 cut(s) | 18, 74, 134, 240, 359, 461 |
| CviKI_1 | RGCY | 6 cut(s) | 18, 74, 134, 240, 359, 461 |
| DdeI | CTNAG | 1 cut(s) | 266 |
| DpnI | GATC | 2 cut(s) | 159, 456 |
| DpnII | GATC | 2 cut(s) | 157, 454 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 231 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 231 |
| Eam1104I | CTCTTC | 1 cut(s) | 167 |
| EarI | CTCTTC | 1 cut(s) | 167 |
| EcoT22I | ATGCAT | 1 cut(s) | 409 |
| FaeI | CATG | 1 cut(s) | 239 |
| FaiI | YATR | 5 cut(s) | 205, 237, 312, 416, 449 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 72, 104, 366, 398 |
| FatI | CATG | 1 cut(s) | 235 |
| Fnu4HI | GCNGC | 1 cut(s) | 470 |
| FokI | GGATG | 1 cut(s) | 300 |
| Fsp4HI | GCNGC | 1 cut(s) | 470 |
| GluI | GCNGC | 1 cut(s) | 470 |
| HaeIII | GGCC | 1 cut(s) | 18 |
| HapII | CCGG | 1 cut(s) | 458 |
| Hin1II | CATG | 1 cut(s) | 239 |
| HinfI | GANTC | 2 cut(s) | 146, 217 |
| HpaII | CCGG | 1 cut(s) | 458 |
| Hpy166II | GTNNAC | 1 cut(s) | 103 |
| Hpy188I | TCNGA | 2 cut(s) | 200, 326 |
| Hpy188III | TCNNGA | 1 cut(s) | 374 |
| Hpy8I | GTNNAC | 1 cut(s) | 103 |
| HpyAV | CCTTC | 3 cut(s) | 113, 272, 436 |
| HpyCH4III | ACNGT | 1 cut(s) | 211 |
| HpyCH4IV | ACGT | 1 cut(s) | 350 |
| HpyCH4V | TGCA | 4 cut(s) | 129, 296, 306, 407 |
| HpyF3I | CTNAG | 1 cut(s) | 266 |
| HpySE526I | ACGT | 1 cut(s) | 350 |
| Hsp92II | CATG | 1 cut(s) | 239 |
| Kzo9I | GATC | 2 cut(s) | 157, 454 |
| LpnPI | CCDG | 5 cut(s) | 32, 44, 120, 341, 471 |
| LweI | GCATC | 3 cut(s) | 278, 394, 416 |
| MaeII | ACGT | 1 cut(s) | 350 |
| MaeIII | GTNAC | 1 cut(s) | 351 |
| MalI | GATC | 2 cut(s) | 159, 456 |
| MboI | GATC | 2 cut(s) | 157, 454 |
| MboII | GAAGA | 1 cut(s) | 154 |
| MflI | RGATCY | 2 cut(s) | 157, 454 |
| MluCI | AATT | 4 cut(s) | 53, 141, 246, 419 |
| MnlI | CCTC | 2 cut(s) | 320, 381 |
| Mph1103I | ATGCAT | 1 cut(s) | 409 |
| MseI | TTAA | 4 cut(s) | 60, 90, 242, 335 |
| MslI | CAYNNNNRTG | 1 cut(s) | 212 |
| MspA1I | CMGCKG | 1 cut(s) | 472 |
| MspI | CCGG | 1 cut(s) | 458 |
| NdeII | GATC | 2 cut(s) | 157, 454 |
| NlaIII | CATG | 1 cut(s) | 239 |
| NmuCI | GTSAC | 1 cut(s) | 351 |
| NsiI | ATGCAT | 1 cut(s) | 409 |
| PfeI | GAWTC | 2 cut(s) | 146, 217 |
| PflFI | GACNNNGTC | 1 cut(s) | 228 |
| PkrI | GCNGC | 1 cut(s) | 471 |
| PsuI | RGATCY | 2 cut(s) | 157, 454 |
| PsyI | GACNNNGTC | 1 cut(s) | 228 |
| RseI | CAYNNNNRTG | 1 cut(s) | 212 |
| SaqAI | TTAA | 4 cut(s) | 60, 90, 242, 335 |
| SatI | GCNGC | 1 cut(s) | 470 |
| Sau3AI | GATC | 2 cut(s) | 157, 454 |
| SetI | ASST | 5 cut(s) | 124, 136, 193, 311, 353 |
| SfaNI | GCATC | 3 cut(s) | 278, 394, 416 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 212 |
| SmlI | CTYRAG | 1 cut(s) | 383 |
| SmoI | CTYRAG | 1 cut(s) | 383 |
| Sse9I | AATT | 4 cut(s) | 53, 141, 246, 419 |
| SsiI | CCGC | 2 cut(s) | 150, 470 |
| SspI | AATATT | 1 cut(s) | 94 |
| TaaI | ACNGT | 1 cut(s) | 211 |
| TaiI | ACGT | 1 cut(s) | 353 |
| TaqI | TCGA | 2 cut(s) | 84, 440 |
| TasI | AATT | 4 cut(s) | 53, 141, 246, 419 |
| TauI | GCSGC | 1 cut(s) | 472 |
| TfiI | GAWTC | 2 cut(s) | 146, 217 |
| Tru1I | TTAA | 4 cut(s) | 60, 90, 242, 335 |
| Tru9I | TTAA | 4 cut(s) | 60, 90, 242, 335 |
| TscAI | CASTG | 2 cut(s) | 214, 360 |
| TseFI | GTSAC | 1 cut(s) | 351 |
| Tsp45I | GTSAC | 1 cut(s) | 351 |
| TspRI | CASTG | 2 cut(s) | 214, 360 |
| Tth111I | GACNNNGTC | 1 cut(s) | 228 |
| Zsp2I | ATGCAT | 1 cut(s) | 409 |