pentatricopeptide repeat-containing protein At1g12700, mitochondrial
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_1 | PF12854 | 75 - 107 | 2.6e-07 | PPR repeat |
| PPR_2 | PF13041 | 78 - 127 | 1.2e-11 | PPR repeat family |
| PPR_1 | PF12854 | 112 - 143 | 2.8e-07 | PPR repeat |
| PPR_1 | PF12854 | 148 - 178 | 1.3e-10 | PPR repeat |
| PPR_2 | PF13041 | 150 - 199 | 1.3e-15 | PPR repeat family |
| PPR_long | PF17177 | 154 - 265 | 3.2e-09 | Pentacotripeptide-repeat region of PRORP |
| PPR_3 | PF13812 | 174 - 233 | 2.5e-12 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 181 - 213 | 1.1e-10 | PPR repeat |
| PPR_2 | PF13041 | 185 - 234 | 6.3e-16 | PPR repeat family |
| PPR_1 | PF12854 | 217 - 248 | 3.7e-09 | PPR repeat |
| PPR_2 | PF13041 | 220 - 268 | 4.8e-13 | PPR repeat family |
| PPR_1 | PF12854 | 252 - 284 | 7.3e-10 | PPR repeat |
| PPR_2 | PF13041 | 255 - 304 | 1.3e-15 | PPR repeat family |
| PPR | PF01535 | 258 - 287 | 1.3e-07 | PPR repeat |
| PPR_1 | PF12854 | 286 - 319 | 8.4e-12 | PPR repeat |
| PPR_2 | PF13041 | 291 - 337 | 7.5e-18 | PPR repeat family |
| PPR | PF01535 | 293 - 323 | 5.5e-10 | PPR repeat |
| PPR_3 | PF13812 | 337 - 393 | 1.2e-07 | Pentatricopeptide repeat domain |
| PPR_2 | PF13041 | 348 - 397 | 1.3e-17 | PPR repeat family |
| PPR_3 | PF13812 | 376 - 428 | 1.1e-08 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 379 - 412 | 8.4e-13 | PPR repeat |
| PPR | PF01535 | 387 - 416 | 2.7e-09 | PPR repeat |
| PPR_2 | PF13041 | 392 - 431 | 2.1e-12 | PPR repeat family |
| PPR_1 | PF12854 | 414 - 447 | 2.5e-06 | PPR repeat |
| PPR_2 | PF13041 | 418 - 465 | 7.3e-09 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 885 |
| AccI | GTMKAC | 1 cut(s) | 321 |
| AciI | CCGC | 1 cut(s) | 13 |
| AclWI | GGATC | 2 cut(s) | 1119, 1406 |
| AcsI | RAATTY | 2 cut(s) | 218, 303 |
| AfaI | GTAC | 1 cut(s) | 331 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 277 |
| AflIII | ACRYGT | 1 cut(s) | 1272 |
| AjnI | CCWGG | 1 cut(s) | 276 |
| AleI | CACNNNNGTG | 1 cut(s) | 44 |
| AluBI | AGCT | 5 cut(s) | 404, 415, 1088, 1103, 1418 |
| AluI | AGCT | 5 cut(s) | 404, 415, 1088, 1103, 1418 |
| Alw21I | GWGCWC | 2 cut(s) | 51, 671 |
| Alw26I | GTCTC | 3 cut(s) | 201, 960, 1298 |
| Alw44I | GTGCAC | 1 cut(s) | 667 |
| AlwI | GGATC | 2 cut(s) | 1119, 1406 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 980 |
| AoxI | GGCC | 3 cut(s) | 14, 601, 1195 |
| ApaLI | GTGCAC | 1 cut(s) | 667 |
| ApeKI | GCWGC | 3 cut(s) | 401, 1103, 1342 |
| ApoI | RAATTY | 2 cut(s) | 218, 303 |
| AspS9I | GGNCC | 1 cut(s) | 1195 |
| AsuHPI | GGTGA | 4 cut(s) | 31, 232, 241, 1136 |
| BaeGI | GKGCMC | 1 cut(s) | 671 |
| BanII | GRGCYC | 1 cut(s) | 863 |
| BauI | CACGAG | 1 cut(s) | 619 |
| BbsI | GAAGAC | 2 cut(s) | 829, 1032 |
| Bbv12I | GWGCWC | 2 cut(s) | 51, 671 |
| BbvI | GCAGC | 3 cut(s) | 413, 1090, 1354 |
| BccI | CCATC | 4 cut(s) | 479, 811, 1015, 1312 |
| BciT130I | CCWGG | 1 cut(s) | 278 |
| BciVI | GTATCC | 1 cut(s) | 1050 |
| BclI | TGATCA | 3 cut(s) | 100, 258, 534 |
| BcoDI | GTCTC | 3 cut(s) | 201, 960, 1298 |
| BfaI | CTAG | 1 cut(s) | 1398 |
| BfmI | CTRYAG | 2 cut(s) | 399, 1356 |
| BfuI | GTATCC | 1 cut(s) | 1050 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 600 |
| BglII | AGATCT | 1 cut(s) | 754 |
| BisI | GCNGC | 4 cut(s) | 14, 402, 1104, 1343 |
| BlsI | GCNGC | 4 cut(s) | 15, 403, 1105, 1344 |
| BmcAI | AGTACT | 1 cut(s) | 331 |
| Bme1390I | CCNGG | 1 cut(s) | 278 |
| BmgT120I | GGNCC | 1 cut(s) | 1195 |
| BmiI | GGNNCC | 2 cut(s) | 972, 1196 |
| BmrFI | CCNGG | 1 cut(s) | 278 |
| BmsI | GCATC | 5 cut(s) | 499, 679, 862, 1351, 1373 |
| BpiI | GAAGAC | 2 cut(s) | 829, 1032 |
| Bpu10I | CCTNAGC | 1 cut(s) | 416 |
| BsaJI | CCNNGG | 4 cut(s) | 276, 291, 729, 855 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 277 |
| Bse1I | ACTGG | 2 cut(s) | 604, 972 |
| Bse3DI | GCAATG | 1 cut(s) | 87 |
| BseBI | CCWGG | 1 cut(s) | 278 |
| BseDI | CCNNGG | 4 cut(s) | 276, 291, 729, 855 |
| BseGI | GGATG | 4 cut(s) | 88, 429, 799, 1009 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 277 |
| BseMI | GCAATG | 1 cut(s) | 87 |
| BseMII | CTCAG | 3 cut(s) | 430, 540, 1237 |
| BseNI | ACTGG | 2 cut(s) | 604, 972 |
| BseRI | GAGGAG | 2 cut(s) | 825, 836 |
| BseSI | GKGCMC | 1 cut(s) | 671 |
| BseXI | GCAGC | 3 cut(s) | 413, 1090, 1354 |
| BsgI | GTGCAG | 1 cut(s) | 1361 |
| BshFI | GGCC | 3 cut(s) | 16, 603, 1197 |
| BsiHKAI | GWGCWC | 2 cut(s) | 51, 671 |
| BslFI | GGGAC | 1 cut(s) | 978 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 277 |
| BsmAI | GTCTC | 3 cut(s) | 201, 960, 1298 |
| BsmFI | GGGAC | 1 cut(s) | 978 |
| BsmI | GAATGC | 1 cut(s) | 512 |
| BsnI | GGCC | 3 cut(s) | 16, 603, 1197 |
| Bsp1286I | GDGCHC | 3 cut(s) | 51, 671, 863 |
| Bsp143I | GATC | 8 cut(s) | 100, 258, 534, 754, 841, 1111, 1411, 1439 |
| Bsp19I | CCATGG | 1 cut(s) | 729 |
| BspACI | CCGC | 1 cut(s) | 13 |
| BspANI | GGCC | 3 cut(s) | 16, 603, 1197 |
| BspCNI | CTCAG | 3 cut(s) | 429, 539, 1236 |
| BspHI | TCATGA | 1 cut(s) | 958 |
| BspLI | GGNNCC | 2 cut(s) | 972, 1196 |
| BspMAI | CTGCAG | 2 cut(s) | 403, 1360 |
| BspPI | GGATC | 2 cut(s) | 1119, 1406 |
| BsrDI | GCAATG | 1 cut(s) | 87 |
| BsrI | ACTGG | 2 cut(s) | 604, 972 |
| BssECI | CCNNGG | 4 cut(s) | 276, 291, 729, 855 |
| BssMI | GATC | 8 cut(s) | 100, 258, 534, 754, 841, 1111, 1411, 1439 |
| BssSI | CACGAG | 1 cut(s) | 619 |
| BssT1I | CCWWGG | 2 cut(s) | 729, 855 |
| Bst2BI | CACGAG | 1 cut(s) | 619 |
| Bst2UI | CCWGG | 1 cut(s) | 278 |
| Bst4CI | ACNGT | 6 cut(s) | 167, 346, 482, 772, 803, 982 |
| Bst6I | CTCTTC | 3 cut(s) | 24, 527, 921 |
| BstC8I | GCNNGC | 1 cut(s) | 911 |
| BstDEI | CTNAG | 5 cut(s) | 416, 454, 526, 1013, 1223 |
| BstDSI | CCRYGG | 1 cut(s) | 729 |
| BstEII | GGTNACC | 1 cut(s) | 850 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 275 |
| BstF5I | GGATG | 4 cut(s) | 88, 429, 799, 1009 |
| BstKTI | GATC | 8 cut(s) | 103, 261, 537, 757, 844, 1114, 1414, 1442 |
| BstMAI | GTCTC | 3 cut(s) | 201, 960, 1298 |
| BstMBI | GATC | 8 cut(s) | 100, 258, 534, 754, 841, 1111, 1411, 1439 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 10, 115, 387, 600 |
| BstNI | CCWGG | 1 cut(s) | 278 |
| BstPI | GGTNACC | 1 cut(s) | 850 |
| BstSCI | CCNGG | 1 cut(s) | 276 |
| BstSFI | CTRYAG | 2 cut(s) | 399, 1356 |
| BstSLI | GKGCMC | 1 cut(s) | 671 |
| BstV1I | GCAGC | 3 cut(s) | 413, 1090, 1354 |
| BstV2I | GAAGAC | 2 cut(s) | 829, 1032 |
| BstX2I | RGATCY | 3 cut(s) | 754, 1111, 1411 |
| BstYI | RGATCY | 3 cut(s) | 754, 1111, 1411 |
| BsuI | GTATCC | 1 cut(s) | 1050 |
| BsuRI | GGCC | 3 cut(s) | 16, 603, 1197 |
| BtgI | CCRYGG | 1 cut(s) | 729 |
| BtgZI | GCGATG | 2 cut(s) | 487, 1331 |
| BtsCI | GGATG | 4 cut(s) | 88, 429, 799, 1009 |
| BtsIMutI | CAGTG | 3 cut(s) | 342, 611, 1231 |
| Cac8I | GCNNGC | 1 cut(s) | 911 |
| CaiI | CAGNNNCTG | 1 cut(s) | 980 |
| CciI | TCATGA | 1 cut(s) | 958 |
| Cfr13I | GGNCC | 1 cut(s) | 1195 |
| Csp6I | GTAC | 1 cut(s) | 330 |
| CviAII | CATG | 3 cut(s) | 584, 730, 959 |
| CviQI | GTAC | 1 cut(s) | 330 |
| DdeI | CTNAG | 5 cut(s) | 416, 454, 526, 1013, 1223 |
| DpnI | GATC | 8 cut(s) | 102, 260, 536, 756, 843, 1113, 1413, 1441 |
| DpnII | GATC | 8 cut(s) | 100, 258, 534, 754, 841, 1111, 1411, 1439 |
| Eam1104I | CTCTTC | 3 cut(s) | 24, 527, 921 |
| EarI | CTCTTC | 3 cut(s) | 24, 527, 921 |
| Eco130I | CCWWGG | 2 cut(s) | 729, 855 |
| Eco24I | GRGCYC | 1 cut(s) | 863 |
| Eco91I | GGTNACC | 1 cut(s) | 850 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 275 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1195 |
| EcoO65I | GGTNACC | 1 cut(s) | 850 |
| EcoRII | CCWGG | 1 cut(s) | 276 |
| EcoT14I | CCWWGG | 2 cut(s) | 729, 855 |
| EcoT22I | ATGCAT | 3 cut(s) | 514, 694, 1366 |
| EcoT38I | GRGCYC | 1 cut(s) | 863 |
| ErhI | CCWWGG | 2 cut(s) | 729, 855 |
| FaeI | CATG | 3 cut(s) | 587, 733, 962 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 437, 469 |
| FaqI | GGGAC | 1 cut(s) | 978 |
| FatI | CATG | 3 cut(s) | 583, 729, 958 |
| FauNDI | CATATG | 2 cut(s) | 180, 1335 |
| FbaI | TGATCA | 3 cut(s) | 100, 258, 534 |
| FblI | GTMKAC | 1 cut(s) | 321 |
| Fnu4HI | GCNGC | 4 cut(s) | 14, 402, 1104, 1343 |
| FokI | GGATG | 4 cut(s) | 95, 436, 806, 1016 |
| FriOI | GRGCYC | 1 cut(s) | 863 |
| Fsp4HI | GCNGC | 4 cut(s) | 14, 402, 1104, 1343 |
| FspBI | CTAG | 1 cut(s) | 1398 |
| GluI | GCNGC | 4 cut(s) | 14, 402, 1104, 1343 |
| HaeIII | GGCC | 3 cut(s) | 16, 603, 1197 |
| Hin1II | CATG | 3 cut(s) | 587, 733, 962 |
| HincII | GTYRAC | 1 cut(s) | 56 |
| HindII | GTYRAC | 1 cut(s) | 56 |
| HinfI | GANTC | 4 cut(s) | 186, 745, 937, 1174 |
| HphI | GGTGA | 4 cut(s) | 31, 232, 241, 1136 |
| Hpy166II | GTNNAC | 4 cut(s) | 56, 322, 351, 669 |
| Hpy188I | TCNGA | 3 cut(s) | 82, 311, 529 |
| Hpy188III | TCNNGA | 9 cut(s) | 227, 418, 437, 659, 758, 947, 959, 974, 1398 |
| Hpy8I | GTNNAC | 4 cut(s) | 56, 322, 351, 669 |
| HpyAV | CCTTC | 4 cut(s) | 33, 256, 281, 682 |
| HpyCH4III | ACNGT | 6 cut(s) | 167, 346, 482, 772, 803, 982 |
| HpyCH4IV | ACGT | 2 cut(s) | 558, 1274 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 10, 115, 387, 600 |
| HpyF3I | CTNAG | 5 cut(s) | 416, 454, 526, 1013, 1223 |
| HpySE526I | ACGT | 2 cut(s) | 558, 1274 |
| Hsp92II | CATG | 3 cut(s) | 587, 733, 962 |
| Ksp22I | TGATCA | 3 cut(s) | 100, 258, 534 |
| Kzo9I | GATC | 8 cut(s) | 100, 258, 534, 754, 841, 1111, 1411, 1439 |
| Lsp1109I | GCAGC | 3 cut(s) | 413, 1090, 1354 |
| LweI | GCATC | 5 cut(s) | 499, 679, 862, 1351, 1373 |
| MaeI | CTAG | 1 cut(s) | 1398 |
| MaeII | ACGT | 2 cut(s) | 558, 1274 |
| MaeIII | GTNAC | 6 cut(s) | 238, 772, 850, 934, 982, 1261 |
| MalI | GATC | 8 cut(s) | 102, 260, 536, 756, 843, 1113, 1413, 1441 |
| MboI | GATC | 8 cut(s) | 100, 258, 534, 754, 841, 1111, 1411, 1439 |
| MboII | GAAGA | 6 cut(s) | 11, 205, 514, 829, 938, 1037 |
| MflI | RGATCY | 3 cut(s) | 754, 1111, 1411 |
| MhlI | GDGCHC | 3 cut(s) | 51, 671, 863 |
| MluCI | AATT | 8 cut(s) | 120, 209, 218, 303, 596, 1007, 1053, 1383 |
| MlyI | GAGTC | 1 cut(s) | 931 |
| Mph1103I | ATGCAT | 3 cut(s) | 514, 694, 1366 |
| MseI | TTAA | 3 cut(s) | 384, 1155, 1164 |
| MslI | CAYNNNNRTG | 3 cut(s) | 44, 998, 1149 |
| MspR9I | CCNGG | 1 cut(s) | 278 |
| Mva1269I | GAATGC | 1 cut(s) | 512 |
| MvaI | CCWGG | 1 cut(s) | 278 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 10, 115, 387, 600 |
| NcoI | CCATGG | 1 cut(s) | 729 |
| NdeI | CATATG | 2 cut(s) | 180, 1335 |
| NdeII | GATC | 8 cut(s) | 100, 258, 534, 754, 841, 1111, 1411, 1439 |
| NlaIII | CATG | 3 cut(s) | 587, 733, 962 |
| NlaIV | GGNNCC | 2 cut(s) | 972, 1196 |
| NmeAIII | GCCGAG | 1 cut(s) | 316 |
| NmuCI | GTSAC | 3 cut(s) | 238, 934, 1261 |
| NsiI | ATGCAT | 3 cut(s) | 514, 694, 1366 |
| OliI | CACNNNNGTG | 1 cut(s) | 44 |
| PagI | TCATGA | 1 cut(s) | 958 |
| PctI | GAATGC | 1 cut(s) | 512 |
| PfeI | GAWTC | 3 cut(s) | 186, 745, 1174 |
| PkrI | GCNGC | 4 cut(s) | 15, 403, 1105, 1344 |
| PleI | GAGTC | 1 cut(s) | 931 |
| PpsI | GAGTC | 1 cut(s) | 931 |
| PsiI | TTATAA | 1 cut(s) | 885 |
| Psp6I | CCWGG | 1 cut(s) | 276 |
| PspEI | GGTNACC | 1 cut(s) | 850 |
| PspGI | CCWGG | 1 cut(s) | 276 |
| PspN4I | GGNNCC | 2 cut(s) | 972, 1196 |
| PspPI | GGNCC | 1 cut(s) | 1195 |
| PstI | CTGCAG | 2 cut(s) | 403, 1360 |
| PstNI | CAGNNNCTG | 1 cut(s) | 980 |
| PsuI | RGATCY | 3 cut(s) | 754, 1111, 1411 |
| RsaI | GTAC | 1 cut(s) | 331 |
| RsaNI | GTAC | 1 cut(s) | 330 |
| RseI | CAYNNNNRTG | 3 cut(s) | 44, 998, 1149 |
| SaqAI | TTAA | 3 cut(s) | 384, 1155, 1164 |
| SatI | GCNGC | 4 cut(s) | 14, 402, 1104, 1343 |
| Sau3AI | GATC | 8 cut(s) | 100, 258, 534, 754, 841, 1111, 1411, 1439 |
| Sau96I | GGNCC | 1 cut(s) | 1195 |
| ScaI | AGTACT | 1 cut(s) | 331 |
| SchI | GAGTC | 1 cut(s) | 931 |
| ScrFI | CCNGG | 1 cut(s) | 278 |
| SduI | GDGCHC | 3 cut(s) | 51, 671, 863 |
| SfaNI | GCATC | 5 cut(s) | 499, 679, 862, 1351, 1373 |
| SfcI | CTRYAG | 2 cut(s) | 399, 1356 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 44, 998, 1149 |
| Sse9I | AATT | 8 cut(s) | 120, 209, 218, 303, 596, 1007, 1053, 1383 |
| SsiI | CCGC | 1 cut(s) | 13 |
| SspI | AATATT | 2 cut(s) | 1048, 1063 |
| SspMI | CTAG | 1 cut(s) | 1398 |
| StyD4I | CCNGG | 1 cut(s) | 276 |
| StyI | CCWWGG | 2 cut(s) | 729, 855 |
| TaaI | ACNGT | 6 cut(s) | 167, 346, 482, 772, 803, 982 |
| TaiI | ACGT | 2 cut(s) | 561, 1277 |
| TaqI | TCGA | 3 cut(s) | 840, 870, 1282 |
| TaqII | GACCGA | 1 cut(s) | 41 |
| TasI | AATT | 8 cut(s) | 120, 209, 218, 303, 596, 1007, 1053, 1383 |
| TatI | WGTACW | 1 cut(s) | 329 |
| TauI | GCSGC | 1 cut(s) | 16 |
| TfiI | GAWTC | 3 cut(s) | 186, 745, 1174 |
| Tru1I | TTAA | 3 cut(s) | 384, 1155, 1164 |
| Tru9I | TTAA | 3 cut(s) | 384, 1155, 1164 |
| TscAI | CASTG | 3 cut(s) | 349, 611, 1231 |
| TseFI | GTSAC | 3 cut(s) | 238, 934, 1261 |
| TseI | GCWGC | 3 cut(s) | 401, 1103, 1342 |
| Tsp45I | GTSAC | 3 cut(s) | 238, 934, 1261 |
| TspDTI | ATGAA | 6 cut(s) | 83, 440, 572, 1020, 1247, 1319 |
| TspGWI | ACGGA | 2 cut(s) | 23, 339 |
| TspRI | CASTG | 3 cut(s) | 349, 611, 1231 |
| VneI | GTGCAC | 1 cut(s) | 667 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 275 |
| XapI | RAATTY | 2 cut(s) | 218, 303 |
| XbaI | TCTAGA | 1 cut(s) | 1397 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 862 |
| XmiI | GTMKAC | 1 cut(s) | 321 |
| XspI | CTAG | 1 cut(s) | 1398 |
| ZrmI | AGTACT | 1 cut(s) | 331 |
| Zsp2I | ATGCAT | 3 cut(s) | 514, 694, 1366 |