Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_3 | PF13812 | 15 - 69 | 2.6e-08 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 21 - 53 | 9.8e-10 | PPR repeat |
| PPR_2 | PF13041 | 24 - 73 | 5.8e-17 | PPR repeat family |
| PPR | PF01535 | 27 - 54 | 1.8e-07 | PPR repeat |
| PPR_1 | PF12854 | 56 - 88 | 7.5e-12 | PPR repeat |
| PPR_2 | PF13041 | 59 - 88 | 8.7e-10 | PPR repeat family |
| PPR | PF01535 | 62 - 88 | 2.3e-08 | PPR repeat |
| PPR_2 | PF13041 | 87 - 127 | 1.1e-10 | PPR repeat family |
| TPR_24 | PF23276 | 92 - 188 | 2.3e-07 | Fungal tetratrico peptide repeats |
| PPR_3 | PF13812 | 104 - 158 | 3.3e-08 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 109 - 142 | 1.9e-09 | PPR repeat |
| PPR_2 | PF13041 | 114 - 161 | 3.2e-14 | PPR repeat family |
| PPR | PF01535 | 117 - 146 | 3.6e-08 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 459 |
| AciI | CCGC | 1 cut(s) | 278 |
| AfaI | GTAC | 2 cut(s) | 86, 333 |
| AgsI | TTSAA | 3 cut(s) | 32, 56, 148 |
| AhlI | ACTAGT | 1 cut(s) | 158 |
| AjnI | CCWGG | 1 cut(s) | 471 |
| AluBI | AGCT | 3 cut(s) | 169, 337, 514 |
| AluI | AGCT | 3 cut(s) | 169, 337, 514 |
| Alw26I | GTCTC | 1 cut(s) | 38 |
| ApeKI | GCWGC | 1 cut(s) | 497 |
| BbsI | GAAGAC | 1 cut(s) | 298 |
| BbvI | GCAGC | 1 cut(s) | 509 |
| BccI | CCATC | 3 cut(s) | 95, 118, 440 |
| BciT130I | CCWGG | 1 cut(s) | 473 |
| BcoDI | GTCTC | 1 cut(s) | 38 |
| BcuI | ACTAGT | 1 cut(s) | 158 |
| BfaI | CTAG | 1 cut(s) | 159 |
| BfmI | CTRYAG | 1 cut(s) | 546 |
| BisI | GCNGC | 1 cut(s) | 498 |
| BlsI | GCNGC | 1 cut(s) | 499 |
| Bme1390I | CCNGG | 1 cut(s) | 473 |
| BmrFI | CCNGG | 1 cut(s) | 473 |
| BmrI | ACTGGG | 1 cut(s) | 230 |
| BmsI | GCATC | 5 cut(s) | 219, 226, 249, 541, 563 |
| BmuI | ACTGGG | 1 cut(s) | 230 |
| BpiI | GAAGAC | 1 cut(s) | 298 |
| BsaAI | YACGTR | 2 cut(s) | 84, 189 |
| BsaJI | CCNNGG | 1 cut(s) | 472 |
| Bse1I | ACTGG | 1 cut(s) | 225 |
| Bse3DI | GCAATG | 1 cut(s) | 426 |
| BseBI | CCWGG | 1 cut(s) | 473 |
| BseDI | CCNNGG | 1 cut(s) | 472 |
| BseGI | GGATG | 3 cut(s) | 106, 133, 234 |
| BseMI | GCAATG | 1 cut(s) | 426 |
| BseMII | CTCAG | 1 cut(s) | 246 |
| BseNI | ACTGG | 1 cut(s) | 225 |
| BseXI | GCAGC | 1 cut(s) | 509 |
| BsgI | GTGCAG | 1 cut(s) | 36 |
| BsmAI | GTCTC | 1 cut(s) | 38 |
| BsmBI | CGTCTC | 1 cut(s) | 38 |
| Bsp143I | GATC | 1 cut(s) | 78 |
| BspACI | CCGC | 1 cut(s) | 278 |
| BspCNI | CTCAG | 1 cut(s) | 247 |
| BspMAI | CTGCAG | 1 cut(s) | 550 |
| BsrDI | GCAATG | 1 cut(s) | 426 |
| BsrI | ACTGG | 1 cut(s) | 225 |
| BssECI | CCNNGG | 1 cut(s) | 472 |
| BssMI | GATC | 1 cut(s) | 78 |
| Bst2UI | CCWGG | 1 cut(s) | 473 |
| Bst4CI | ACNGT | 2 cut(s) | 14, 184 |
| Bst6I | CTCTTC | 1 cut(s) | 420 |
| BstBAI | YACGTR | 2 cut(s) | 84, 189 |
| BstDEI | CTNAG | 3 cut(s) | 255, 413, 579 |
| BstF5I | GGATG | 3 cut(s) | 106, 133, 234 |
| BstKTI | GATC | 1 cut(s) | 81 |
| BstMAI | GTCTC | 1 cut(s) | 38 |
| BstMBI | GATC | 1 cut(s) | 78 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 503 |
| BstNI | CCWGG | 1 cut(s) | 473 |
| BstSCI | CCNGG | 1 cut(s) | 471 |
| BstSFI | CTRYAG | 1 cut(s) | 546 |
| BstV1I | GCAGC | 1 cut(s) | 509 |
| BstV2I | GAAGAC | 1 cut(s) | 298 |
| BtsCI | GGATG | 3 cut(s) | 106, 133, 234 |
| BtsIMutI | CAGTG | 1 cut(s) | 19 |
| Csp6I | GTAC | 2 cut(s) | 85, 332 |
| CviJI | RGCY | 7 cut(s) | 70, 169, 337, 387, 450, 506, 514 |
| CviKI_1 | RGCY | 7 cut(s) | 70, 169, 337, 387, 450, 506, 514 |
| CviQI | GTAC | 2 cut(s) | 85, 332 |
| DdeI | CTNAG | 3 cut(s) | 255, 413, 579 |
| DpnI | GATC | 1 cut(s) | 80 |
| DpnII | GATC | 1 cut(s) | 78 |
| Eam1104I | CTCTTC | 1 cut(s) | 420 |
| EarI | CTCTTC | 1 cut(s) | 420 |
| EcoRII | CCWGG | 1 cut(s) | 471 |
| EcoT22I | ATGCAT | 1 cut(s) | 556 |
| Esp3I | CGTCTC | 1 cut(s) | 38 |
| FaiI | YATR | 9 cut(s) | 63, 98, 108, 155, 192, 359, 459, 489, 563 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 396, 428 |
| FauI | CCCGC | 1 cut(s) | 271 |
| Fnu4HI | GCNGC | 1 cut(s) | 498 |
| FokI | GGATG | 3 cut(s) | 113, 140, 241 |
| Fsp4HI | GCNGC | 1 cut(s) | 498 |
| FspBI | CTAG | 1 cut(s) | 159 |
| GluI | GCNGC | 1 cut(s) | 498 |
| HindIII | AAGCTT | 1 cut(s) | 512 |
| HinfI | GANTC | 2 cut(s) | 52, 290 |
| Hpy188I | TCNGA | 1 cut(s) | 256 |
| Hpy188III | TCNNGA | 3 cut(s) | 148, 176, 443 |
| HpyAV | CCTTC | 1 cut(s) | 529 |
| HpyCH4III | ACNGT | 2 cut(s) | 14, 184 |
| HpyCH4IV | ACGT | 2 cut(s) | 83, 188 |
| HpyCH4V | TGCA | 8 cut(s) | 17, 232, 262, 273, 296, 354, 548, 554 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 503 |
| HpyF3I | CTNAG | 3 cut(s) | 255, 413, 579 |
| HpySE526I | ACGT | 2 cut(s) | 83, 188 |
| Kzo9I | GATC | 1 cut(s) | 78 |
| LmnI | GCTCC | 1 cut(s) | 166 |
| LpnPI | CCDG | 8 cut(s) | 84, 189, 206, 297, 436, 456, 458, 485 |
| Lsp1109I | GCAGC | 1 cut(s) | 509 |
| LweI | GCATC | 5 cut(s) | 219, 226, 249, 541, 563 |
| MaeI | CTAG | 1 cut(s) | 159 |
| MaeII | ACGT | 2 cut(s) | 83, 188 |
| MaeIII | GTNAC | 2 cut(s) | 184, 539 |
| MalI | GATC | 1 cut(s) | 80 |
| MboI | GATC | 1 cut(s) | 78 |
| MboII | GAAGA | 3 cut(s) | 298, 416, 437 |
| MluCI | AATT | 4 cut(s) | 88, 460, 484, 566 |
| MnlI | CCTC | 7 cut(s) | 110, 124, 219, 331, 339, 377, 487 |
| Mph1103I | ATGCAT | 1 cut(s) | 556 |
| MseI | TTAA | 3 cut(s) | 339, 392, 519 |
| MspR9I | CCNGG | 1 cut(s) | 473 |
| MvaI | CCWGG | 1 cut(s) | 473 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 503 |
| NdeII | GATC | 1 cut(s) | 78 |
| NmuCI | GTSAC | 1 cut(s) | 184 |
| NsiI | ATGCAT | 1 cut(s) | 556 |
| PfeI | GAWTC | 2 cut(s) | 52, 290 |
| PflFI | GACNNNGTC | 1 cut(s) | 182 |
| PkrI | GCNGC | 1 cut(s) | 499 |
| Ppu21I | YACGTR | 2 cut(s) | 84, 189 |
| PsiI | TTATAA | 1 cut(s) | 459 |
| Psp6I | CCWGG | 1 cut(s) | 471 |
| PspGI | CCWGG | 1 cut(s) | 471 |
| PstI | CTGCAG | 1 cut(s) | 550 |
| PsyI | GACNNNGTC | 1 cut(s) | 182 |
| RsaI | GTAC | 2 cut(s) | 86, 333 |
| RsaNI | GTAC | 2 cut(s) | 85, 332 |
| SaqAI | TTAA | 3 cut(s) | 339, 392, 519 |
| SatI | GCNGC | 1 cut(s) | 498 |
| Sau3AI | GATC | 1 cut(s) | 78 |
| ScrFI | CCNGG | 1 cut(s) | 473 |
| SetI | ASST | 7 cut(s) | 86, 171, 191, 268, 339, 436, 516 |
| SfaNI | GCATC | 5 cut(s) | 219, 226, 249, 541, 563 |
| SfcI | CTRYAG | 1 cut(s) | 546 |
| SpeI | ACTAGT | 1 cut(s) | 158 |
| Sse9I | AATT | 4 cut(s) | 88, 460, 484, 566 |
| SsiI | CCGC | 1 cut(s) | 278 |
| SspMI | CTAG | 1 cut(s) | 159 |
| StyD4I | CCNGG | 1 cut(s) | 471 |
| TaaI | ACNGT | 2 cut(s) | 14, 184 |
| TaiI | ACGT | 2 cut(s) | 86, 191 |
| TaqI | TCGA | 1 cut(s) | 323 |
| TasI | AATT | 4 cut(s) | 88, 460, 484, 566 |
| TatI | WGTACW | 1 cut(s) | 331 |
| TfiI | GAWTC | 2 cut(s) | 52, 290 |
| Tru1I | TTAA | 3 cut(s) | 339, 392, 519 |
| Tru9I | TTAA | 3 cut(s) | 339, 392, 519 |
| TscAI | CASTG | 1 cut(s) | 19 |
| TseFI | GTSAC | 1 cut(s) | 184 |
| TseI | GCWGC | 1 cut(s) | 497 |
| Tsp45I | GTSAC | 1 cut(s) | 184 |
| TspGWI | ACGGA | 1 cut(s) | 222 |
| TspRI | CASTG | 1 cut(s) | 19 |
| Tth111I | GACNNNGTC | 1 cut(s) | 182 |
| XspI | CTAG | 1 cut(s) | 159 |
| Zsp2I | ATGCAT | 1 cut(s) | 556 |