endonuclease activity
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 86 - 135 | 1.9e-06 | PPR repeat family |
| PPR_3 | PF13812 | 148 - 202 | 3.5e-08 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 153 - 184 | 1.2e-06 | PPR repeat |
| PPR_2 | PF13041 | 156 - 205 | 7.6e-14 | PPR repeat family |
| PPR_3 | PF13812 | 185 - 237 | 2.4e-08 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 189 - 221 | 7.5e-11 | PPR repeat |
| PPR_2 | PF13041 | 192 - 241 | 3.1e-13 | PPR repeat family |
| PPR_1 | PF12854 | 225 - 256 | 5.6e-12 | PPR repeat |
| PPR_2 | PF13041 | 227 - 260 | 3.7e-09 | PPR repeat family |
| PPR | PF01535 | 230 - 260 | 1.3e-06 | PPR repeat |
| PPR_2 | PF13041 | 258 - 291 | 5.2e-10 | PPR repeat family |
| PPR_1 | PF12854 | 274 - 307 | 6.8e-10 | PPR repeat |
| PPR_2 | PF13041 | 278 - 325 | 2.2e-10 | PPR repeat family |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 890 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 916 |
| AccI | GTMKAC | 1 cut(s) | 947 |
| AccII | CGCG | 2 cut(s) | 18, 20 |
| AciI | CCGC | 4 cut(s) | 20, 68, 791, 996 |
| AclI | AACGTT | 1 cut(s) | 630 |
| AclWI | GGATC | 1 cut(s) | 986 |
| AcsI | RAATTY | 2 cut(s) | 443, 796 |
| AcyI | GRCGYC | 1 cut(s) | 887 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 511, 916 |
| AflII | CTTAAG | 1 cut(s) | 650 |
| AhlI | ACTAGT | 1 cut(s) | 598 |
| AluBI | AGCT | 4 cut(s) | 187, 200, 638, 671 |
| AluI | AGCT | 4 cut(s) | 187, 200, 638, 671 |
| Alw26I | GTCTC | 2 cut(s) | 878, 895 |
| AlwI | GGATC | 1 cut(s) | 986 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 717 |
| Ama87I | CYCGRG | 1 cut(s) | 509 |
| AoxI | GGCC | 1 cut(s) | 775 |
| ApeKI | GCWGC | 1 cut(s) | 36 |
| ApoI | RAATTY | 2 cut(s) | 443, 796 |
| AseI | ATTAAT | 2 cut(s) | 390, 491 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 237, 752 |
| AspLEI | GCGC | 2 cut(s) | 18, 20 |
| AspS9I | GGNCC | 1 cut(s) | 359 |
| AsuC2I | CCSGG | 1 cut(s) | 863 |
| AsuHPI | GGTGA | 1 cut(s) | 487 |
| AvaI | CYCGRG | 1 cut(s) | 509 |
| AvaII | GGWCC | 1 cut(s) | 359 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 717, 750 |
| BbsI | GAAGAC | 1 cut(s) | 74 |
| BbvCI | CCTCAGC | 1 cut(s) | 5 |
| BbvI | GCAGC | 1 cut(s) | 48 |
| BccI | CCATC | 2 cut(s) | 547, 652 |
| BceAI | ACGGC | 1 cut(s) | 514 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 306, 340 |
| BclI | TGATCA | 1 cut(s) | 334 |
| BcnI | CCSGG | 1 cut(s) | 863 |
| BcoDI | GTCTC | 2 cut(s) | 878, 895 |
| BcuI | ACTAGT | 1 cut(s) | 598 |
| BfaI | CTAG | 3 cut(s) | 599, 779, 978 |
| BfmI | CTRYAG | 2 cut(s) | 936, 951 |
| BfrI | CTTAAG | 1 cut(s) | 650 |
| BisI | GCNGC | 3 cut(s) | 21, 37, 68 |
| BlsI | GCNGC | 3 cut(s) | 22, 38, 69 |
| Bme1390I | CCNGG | 1 cut(s) | 863 |
| Bme18I | GGWCC | 1 cut(s) | 359 |
| BmeT110I | CYCGRG | 1 cut(s) | 509 |
| BmgT120I | GGNCC | 1 cut(s) | 359 |
| BmrFI | CCNGG | 1 cut(s) | 863 |
| BmrI | ACTGGG | 1 cut(s) | 464 |
| BmsI | GCATC | 7 cut(s) | 3, 39, 190, 202, 517, 730, 931 |
| BmuI | ACTGGG | 1 cut(s) | 464 |
| BoxI | GACNNNNGTC | 1 cut(s) | 290 |
| BpiI | GAAGAC | 1 cut(s) | 74 |
| BpmI | CTGGAG | 1 cut(s) | 816 |
| Bpu10I | CCTNAGC | 1 cut(s) | 5 |
| BpuEI | CTTGAG | 1 cut(s) | 273 |
| BpuMI | CCSGG | 1 cut(s) | 863 |
| BsaHI | GRCGYC | 1 cut(s) | 887 |
| BsaJI | CCNNGG | 1 cut(s) | 862 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 511, 916 |
| Bse1I | ACTGG | 2 cut(s) | 31, 459 |
| BseDI | CCNNGG | 1 cut(s) | 862 |
| BseGI | GGATG | 4 cut(s) | 15, 663, 745, 988 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 511, 916 |
| BseMII | CTCAG | 3 cut(s) | 35, 398, 771 |
| BseNI | ACTGG | 2 cut(s) | 31, 459 |
| BsePI | GCGCGC | 1 cut(s) | 16 |
| BseXI | GCAGC | 1 cut(s) | 48 |
| Bsh1236I | CGCG | 2 cut(s) | 18, 20 |
| BshFI | GGCC | 1 cut(s) | 777 |
| BsiHKCI | CYCGRG | 1 cut(s) | 509 |
| BsiSI | CCGG | 1 cut(s) | 862 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 511, 916 |
| BsmAI | GTCTC | 2 cut(s) | 878, 895 |
| BsmBI | CGTCTC | 1 cut(s) | 878 |
| BsnI | GGCC | 1 cut(s) | 777 |
| BsoBI | CYCGRG | 1 cut(s) | 509 |
| Bsp143I | GATC | 2 cut(s) | 334, 991 |
| BspACI | CCGC | 4 cut(s) | 20, 68, 791, 996 |
| BspANI | GGCC | 1 cut(s) | 777 |
| BspCNI | CTCAG | 3 cut(s) | 36, 399, 770 |
| BspFNI | CGCG | 2 cut(s) | 18, 20 |
| BspMAI | CTGCAG | 1 cut(s) | 940 |
| BspPI | GGATC | 1 cut(s) | 986 |
| BspTI | CTTAAG | 1 cut(s) | 650 |
| BsrI | ACTGG | 2 cut(s) | 31, 459 |
| BssECI | CCNNGG | 1 cut(s) | 862 |
| BssHII | GCGCGC | 1 cut(s) | 16 |
| BssMI | GATC | 2 cut(s) | 334, 991 |
| BssNI | GRCGYC | 1 cut(s) | 887 |
| Bst6I | CTCTTC | 2 cut(s) | 758, 810 |
| BstACI | GRCGYC | 1 cut(s) | 887 |
| BstAFI | CTTAAG | 1 cut(s) | 650 |
| BstC8I | GCNNGC | 2 cut(s) | 18, 673 |
| BstDEI | CTNAG | 4 cut(s) | 5, 44, 407, 757 |
| BstEII | GGTNACC | 1 cut(s) | 475 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 509 |
| BstF5I | GGATG | 4 cut(s) | 15, 663, 745, 988 |
| BstFNI | CGCG | 2 cut(s) | 18, 20 |
| BstHHI | GCGC | 2 cut(s) | 18, 20 |
| BstKTI | GATC | 2 cut(s) | 337, 994 |
| BstMAI | GTCTC | 2 cut(s) | 878, 895 |
| BstMBI | GATC | 2 cut(s) | 334, 991 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 36, 73, 244, 253, 1004 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 290 |
| BstPI | GGTNACC | 1 cut(s) | 475 |
| BstSCI | CCNGG | 1 cut(s) | 861 |
| BstSFI | CTRYAG | 2 cut(s) | 936, 951 |
| BstUI | CGCG | 2 cut(s) | 18, 20 |
| BstV1I | GCAGC | 1 cut(s) | 48 |
| BstV2I | GAAGAC | 1 cut(s) | 74 |
| BstX2I | RGATCY | 1 cut(s) | 991 |
| BstYI | RGATCY | 1 cut(s) | 991 |
| BsuRI | GGCC | 1 cut(s) | 777 |
| BtgZI | GCGATG | 1 cut(s) | 911 |
| BtsCI | GGATG | 4 cut(s) | 15, 663, 745, 988 |
| Cac8I | GCNNGC | 2 cut(s) | 18, 673 |
| CaiI | CAGNNNCTG | 1 cut(s) | 717 |
| CfoI | GCGC | 2 cut(s) | 18, 20 |
| Cfr13I | GGNCC | 1 cut(s) | 359 |
| CseI | GACGC | 2 cut(s) | 236, 933 |
| CviAII | CATG | 2 cut(s) | 616, 911 |
| DdeI | CTNAG | 4 cut(s) | 5, 44, 407, 757 |
| DpnI | GATC | 2 cut(s) | 336, 993 |
| DpnII | GATC | 2 cut(s) | 334, 991 |
| Eam1104I | CTCTTC | 2 cut(s) | 758, 810 |
| EarI | CTCTTC | 2 cut(s) | 758, 810 |
| Eco147I | AGGCCT | 1 cut(s) | 777 |
| Eco47I | GGWCC | 1 cut(s) | 359 |
| Eco88I | CYCGRG | 1 cut(s) | 509 |
| Eco91I | GGTNACC | 1 cut(s) | 475 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 509 |
| EcoO65I | GGTNACC | 1 cut(s) | 475 |
| EcoT22I | ATGCAT | 1 cut(s) | 745 |
| Esp3I | CGTCTC | 1 cut(s) | 878 |
| FaeI | CATG | 2 cut(s) | 619, 914 |
| FaiI | YATR | 7 cut(s) | 65, 596, 617, 641, 696, 849, 912 |
| FatI | CATG | 2 cut(s) | 615, 910 |
| FauI | CCCGC | 1 cut(s) | 1003 |
| FbaI | TGATCA | 1 cut(s) | 334 |
| FblI | GTMKAC | 1 cut(s) | 947 |
| Fnu4HI | GCNGC | 3 cut(s) | 21, 37, 68 |
| FokI | GGATG | 4 cut(s) | 22, 670, 752, 995 |
| Fsp4HI | GCNGC | 3 cut(s) | 21, 37, 68 |
| FspBI | CTAG | 3 cut(s) | 599, 779, 978 |
| GlaI | GCGC | 2 cut(s) | 17, 19 |
| GluI | GCNGC | 3 cut(s) | 21, 37, 68 |
| GsuI | CTGGAG | 1 cut(s) | 816 |
| HaeIII | GGCC | 1 cut(s) | 777 |
| HapII | CCGG | 1 cut(s) | 862 |
| HgaI | GACGC | 2 cut(s) | 236, 933 |
| HhaI | GCGC | 2 cut(s) | 18, 20 |
| Hin1I | GRCGYC | 1 cut(s) | 887 |
| Hin1II | CATG | 2 cut(s) | 619, 914 |
| Hin6I | GCGC | 2 cut(s) | 16, 18 |
| HinP1I | GCGC | 2 cut(s) | 16, 18 |
| HinfI | GANTC | 3 cut(s) | 108, 286, 538 |
| HpaII | CCGG | 1 cut(s) | 862 |
| HphI | GGTGA | 1 cut(s) | 487 |
| Hpy166II | GTNNAC | 3 cut(s) | 585, 804, 948 |
| Hpy188I | TCNGA | 3 cut(s) | 408, 543, 760 |
| Hpy188III | TCNNGA | 4 cut(s) | 141, 509, 535, 833 |
| Hpy8I | GTNNAC | 3 cut(s) | 585, 804, 948 |
| HpyAV | CCTTC | 5 cut(s) | 156, 267, 490, 515, 613 |
| HpyCH4IV | ACGT | 3 cut(s) | 630, 684, 887 |
| HpyCH4V | TGCA | 8 cut(s) | 181, 215, 615, 643, 675, 743, 843, 938 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 36, 73, 244, 253, 1004 |
| HpyF3I | CTNAG | 4 cut(s) | 5, 44, 407, 757 |
| HpySE526I | ACGT | 3 cut(s) | 630, 684, 887 |
| Hsp92I | GRCGYC | 1 cut(s) | 887 |
| Hsp92II | CATG | 2 cut(s) | 619, 914 |
| HspAI | GCGC | 2 cut(s) | 16, 18 |
| Ksp22I | TGATCA | 1 cut(s) | 334 |
| Kzo9I | GATC | 2 cut(s) | 334, 991 |
| LmnI | GCTCC | 3 cut(s) | 133, 635, 668 |
| LpnPI | CCDG | 8 cut(s) | 12, 168, 440, 693, 716, 846, 875, 916 |
| Lsp1109I | GCAGC | 1 cut(s) | 48 |
| LweI | GCATC | 7 cut(s) | 3, 39, 190, 202, 517, 730, 931 |
| MaeI | CTAG | 3 cut(s) | 599, 779, 978 |
| MaeII | ACGT | 3 cut(s) | 630, 684, 887 |
| MaeIII | GTNAC | 3 cut(s) | 89, 475, 623 |
| MalI | GATC | 2 cut(s) | 336, 993 |
| MboI | GATC | 2 cut(s) | 334, 991 |
| MboII | GAAGA | 6 cut(s) | 74, 77, 103, 439, 745, 827 |
| MfeI | CAATTG | 2 cut(s) | 176, 644 |
| MflI | RGATCY | 1 cut(s) | 991 |
| MlyI | GAGTC | 1 cut(s) | 280 |
| MmeI | TCCRAC | 1 cut(s) | 613 |
| MnlI | CCTC | 8 cut(s) | 53, 81, 261, 505, 514, 648, 725, 918 |
| Mph1103I | ATGCAT | 1 cut(s) | 745 |
| MroXI | GAANNNNTTC | 2 cut(s) | 237, 752 |
| MseI | TTAA | 4 cut(s) | 390, 491, 603, 651 |
| MspCI | CTTAAG | 1 cut(s) | 650 |
| MspI | CCGG | 1 cut(s) | 862 |
| MspR9I | CCNGG | 1 cut(s) | 863 |
| MunI | CAATTG | 2 cut(s) | 176, 644 |
| MvnI | CGCG | 2 cut(s) | 18, 20 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 36, 73, 244, 253, 1004 |
| NciI | CCSGG | 1 cut(s) | 863 |
| NdeII | GATC | 2 cut(s) | 334, 991 |
| NlaIII | CATG | 2 cut(s) | 619, 914 |
| NmeAIII | GCCGAG | 1 cut(s) | 293 |
| NmuCI | GTSAC | 1 cut(s) | 475 |
| NsiI | ATGCAT | 1 cut(s) | 745 |
| PaeR7I | CTCGAG | 1 cut(s) | 509 |
| PauI | GCGCGC | 1 cut(s) | 16 |
| PceI | AGGCCT | 1 cut(s) | 777 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 893 |
| PdmI | GAANNNNTTC | 2 cut(s) | 237, 752 |
| PfeI | GAWTC | 2 cut(s) | 108, 538 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 916 |
| PkrI | GCNGC | 3 cut(s) | 22, 38, 69 |
| PleI | GAGTC | 1 cut(s) | 280 |
| PpsI | GAGTC | 1 cut(s) | 280 |
| PshAI | GACNNNNGTC | 1 cut(s) | 290 |
| PshBI | ATTAAT | 2 cut(s) | 390, 491 |
| Psp1406I | AACGTT | 1 cut(s) | 630 |
| PspEI | GGTNACC | 1 cut(s) | 475 |
| PspPI | GGNCC | 1 cut(s) | 359 |
| PstI | CTGCAG | 1 cut(s) | 940 |
| PstNI | CAGNNNCTG | 1 cut(s) | 717 |
| PsuI | RGATCY | 1 cut(s) | 991 |
| PteI | GCGCGC | 1 cut(s) | 16 |
| SaqAI | TTAA | 4 cut(s) | 390, 491, 603, 651 |
| SatI | GCNGC | 3 cut(s) | 21, 37, 68 |
| Sau3AI | GATC | 2 cut(s) | 334, 991 |
| Sau96I | GGNCC | 1 cut(s) | 359 |
| SchI | GAGTC | 1 cut(s) | 280 |
| ScrFI | CCNGG | 1 cut(s) | 863 |
| SfaNI | GCATC | 7 cut(s) | 3, 39, 190, 202, 517, 730, 931 |
| SfcI | CTRYAG | 2 cut(s) | 936, 951 |
| Sfr274I | CTCGAG | 1 cut(s) | 509 |
| SinI | GGWCC | 1 cut(s) | 359 |
| SlaI | CTCGAG | 1 cut(s) | 509 |
| SmlI | CTYRAG | 3 cut(s) | 288, 509, 650 |
| SmoI | CTYRAG | 3 cut(s) | 288, 509, 650 |
| SpeI | ACTAGT | 1 cut(s) | 598 |
| SseBI | AGGCCT | 1 cut(s) | 777 |
| SsiI | CCGC | 4 cut(s) | 20, 68, 791, 996 |
| SspMI | CTAG | 3 cut(s) | 599, 779, 978 |
| StuI | AGGCCT | 1 cut(s) | 777 |
| StyD4I | CCNGG | 1 cut(s) | 861 |
| TaiI | ACGT | 3 cut(s) | 633, 687, 890 |
| TaqI | TCGA | 5 cut(s) | 106, 142, 228, 510, 708 |
| TauI | GCSGC | 2 cut(s) | 23, 70 |
| TfiI | GAWTC | 2 cut(s) | 108, 538 |
| Tru1I | TTAA | 4 cut(s) | 390, 491, 603, 651 |
| Tru9I | TTAA | 4 cut(s) | 390, 491, 603, 651 |
| TseFI | GTSAC | 1 cut(s) | 475 |
| TseI | GCWGC | 1 cut(s) | 36 |
| Tsp45I | GTSAC | 1 cut(s) | 475 |
| TspDTI | ATGAA | 4 cut(s) | 246, 632, 927, 999 |
| TspGWI | ACGGA | 4 cut(s) | 120, 209, 250, 257 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 916 |
| Vha464I | CTTAAG | 1 cut(s) | 650 |
| VpaK11BI | GGWCC | 1 cut(s) | 359 |
| VspI | ATTAAT | 2 cut(s) | 390, 491 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 509 |
| XapI | RAATTY | 2 cut(s) | 443, 796 |
| XhoI | CTCGAG | 1 cut(s) | 509 |
| XmiI | GTMKAC | 1 cut(s) | 947 |
| XmnI | GAANNNNTTC | 2 cut(s) | 237, 752 |
| XspI | CTAG | 3 cut(s) | 599, 779, 978 |
| ZraI | GACGTC | 1 cut(s) | 888 |
| Zsp2I | ATGCAT | 1 cut(s) | 745 |