Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_3 | PF13812 | 11 - 64 | 1.8e-07 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 52 - 83 | 3.1e-12 | PPR repeat |
| PPR_2 | PF13041 | 54 - 103 | 1.6e-18 | PPR repeat family |
| PPR_3 | PF13812 | 54 - 99 | 9e-11 | Pentatricopeptide repeat domain |
| PPR | PF01535 | 57 - 87 | 5.3e-07 | PPR repeat |
| PPR_long | PF17177 | 69 - 218 | 1.5e-09 | Pentacotripeptide-repeat region of PRORP |
| PPR_1 | PF12854 | 85 - 117 | 3.2e-11 | PPR repeat |
| PPR_2 | PF13041 | 89 - 138 | 5.7e-17 | PPR repeat family |
| PPR_2 | PF13041 | 146 - 182 | 1.4e-10 | PPR repeat family |
| PPR_3 | PF13812 | 158 - 202 | 9.8e-06 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 165 - 197 | 6.9e-13 | PPR repeat |
| PPR | PF01535 | 172 - 200 | 5.1e-08 | PPR repeat |
| PPR_2 | PF13041 | 176 - 217 | 4.5e-10 | PPR repeat family |
| PPR_1 | PF12854 | 202 - 232 | 1.9e-06 | PPR repeat |
| PPR_2 | PF13041 | 205 - 243 | 2.1e-10 | PPR repeat family |
| PPR | PF01535 | 208 - 235 | 2e-06 | PPR repeat |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 137 |
| AccI | GTMKAC | 1 cut(s) | 279 |
| AclI | AACGTT | 1 cut(s) | 375 |
| AclWI | GGATC | 1 cut(s) | 481 |
| AgsI | TTSAA | 7 cut(s) | 37, 50, 178, 230, 401, 479, 689 |
| AjnI | CCWGG | 1 cut(s) | 678 |
| AluBI | AGCT | 3 cut(s) | 12, 224, 655 |
| AluI | AGCT | 3 cut(s) | 12, 224, 655 |
| AlwI | GGATC | 1 cut(s) | 481 |
| AoxI | GGCC | 2 cut(s) | 600, 672 |
| ApeKI | GCWGC | 3 cut(s) | 116, 139, 221 |
| AseI | ATTAAT | 1 cut(s) | 530 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 338, 696, 711 |
| AsuHPI | GGTGA | 4 cut(s) | 52, 181, 221, 566 |
| BbsI | GAAGAC | 1 cut(s) | 38 |
| BbvI | GCAGC | 3 cut(s) | 126, 128, 233 |
| BccI | CCATC | 3 cut(s) | 238, 530, 731 |
| BceAI | ACGGC | 1 cut(s) | 100 |
| BciT130I | CCWGG | 1 cut(s) | 680 |
| BciVI | GTATCC | 2 cut(s) | 304, 638 |
| BclI | TGATCA | 1 cut(s) | 667 |
| BfmI | CTRYAG | 4 cut(s) | 140, 219, 280, 520 |
| BfuAI | ACCTGC | 1 cut(s) | 137 |
| BfuI | GTATCC | 2 cut(s) | 304, 638 |
| BisI | GCNGC | 3 cut(s) | 117, 140, 222 |
| BlpI | GCTNAGC | 1 cut(s) | 593 |
| BlsI | GCNGC | 3 cut(s) | 118, 141, 223 |
| Bme1390I | CCNGG | 1 cut(s) | 680 |
| BmrFI | CCNGG | 1 cut(s) | 680 |
| BmsI | GCATC | 1 cut(s) | 316 |
| BpiI | GAAGAC | 1 cut(s) | 38 |
| Bpu10I | CCTNAGC | 2 cut(s) | 111, 236 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 593 |
| BpuEI | CTTGAG | 1 cut(s) | 80 |
| Bse3DI | GCAATG | 1 cut(s) | 363 |
| BseBI | CCWGG | 1 cut(s) | 680 |
| BseGI | GGATG | 2 cut(s) | 541, 568 |
| BseMI | GCAATG | 1 cut(s) | 363 |
| BseMII | CTCAG | 2 cut(s) | 250, 357 |
| BseXI | GCAGC | 3 cut(s) | 126, 128, 233 |
| BshFI | GGCC | 2 cut(s) | 602, 674 |
| BslFI | GGGAC | 1 cut(s) | 207 |
| BsmFI | GGGAC | 1 cut(s) | 207 |
| BsnI | GGCC | 2 cut(s) | 602, 674 |
| Bsp143I | GATC | 4 cut(s) | 288, 486, 583, 667 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 593 |
| BspANI | GGCC | 2 cut(s) | 602, 674 |
| BspCNI | CTCAG | 2 cut(s) | 249, 356 |
| BspMAI | CTGCAG | 2 cut(s) | 144, 223 |
| BspMI | ACCTGC | 1 cut(s) | 137 |
| BspPI | GGATC | 1 cut(s) | 481 |
| BsrDI | GCAATG | 1 cut(s) | 363 |
| BssMI | GATC | 4 cut(s) | 288, 486, 583, 667 |
| Bst2UI | CCWGG | 1 cut(s) | 680 |
| Bst4CI | ACNGT | 6 cut(s) | 58, 299, 435, 524, 545, 650 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 603 |
| BstC8I | GCNNGC | 2 cut(s) | 144, 604 |
| BstDEI | CTNAG | 4 cut(s) | 111, 236, 343, 593 |
| BstF5I | GGATG | 2 cut(s) | 541, 568 |
| BstKTI | GATC | 4 cut(s) | 291, 489, 586, 670 |
| BstMBI | GATC | 4 cut(s) | 288, 486, 583, 667 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 116, 603 |
| BstNI | CCWGG | 1 cut(s) | 680 |
| BstSCI | CCNGG | 1 cut(s) | 678 |
| BstSFI | CTRYAG | 4 cut(s) | 140, 219, 280, 520 |
| BstV1I | GCAGC | 3 cut(s) | 126, 128, 233 |
| BstV2I | GAAGAC | 1 cut(s) | 38 |
| BsuI | GTATCC | 2 cut(s) | 304, 638 |
| BsuRI | GGCC | 2 cut(s) | 602, 674 |
| BtsCI | GGATG | 2 cut(s) | 541, 568 |
| BtsI | GCAGTG | 1 cut(s) | 216 |
| BtsIMutI | CAGTG | 2 cut(s) | 216, 329 |
| BveI | ACCTGC | 1 cut(s) | 137 |
| Cac8I | GCNNGC | 2 cut(s) | 144, 604 |
| CsiI | ACCWGGT | 1 cut(s) | 678 |
| CviAII | CATG | 2 cut(s) | 202, 607 |
| DdeI | CTNAG | 4 cut(s) | 111, 236, 343, 593 |
| DpnI | GATC | 4 cut(s) | 290, 488, 585, 669 |
| DpnII | GATC | 4 cut(s) | 288, 486, 583, 667 |
| Eco147I | AGGCCT | 1 cut(s) | 602 |
| EcoRII | CCWGG | 1 cut(s) | 678 |
| FaeI | CATG | 2 cut(s) | 205, 610 |
| FaiI | YATR | 5 cut(s) | 203, 416, 608, 632, 702 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 681, 713 |
| FaqI | GGGAC | 1 cut(s) | 207 |
| FatI | CATG | 2 cut(s) | 201, 606 |
| FbaI | TGATCA | 1 cut(s) | 667 |
| FblI | GTMKAC | 1 cut(s) | 279 |
| Fnu4HI | GCNGC | 3 cut(s) | 117, 140, 222 |
| FokI | GGATG | 2 cut(s) | 548, 575 |
| Fsp4HI | GCNGC | 3 cut(s) | 117, 140, 222 |
| GluI | GCNGC | 3 cut(s) | 117, 140, 222 |
| HaeIII | GGCC | 2 cut(s) | 602, 674 |
| Hin1II | CATG | 2 cut(s) | 205, 610 |
| HindIII | AAGCTT | 1 cut(s) | 653 |
| HinfI | GANTC | 1 cut(s) | 397 |
| HphI | GGTGA | 4 cut(s) | 52, 181, 221, 566 |
| Hpy166II | GTNNAC | 1 cut(s) | 280 |
| Hpy188I | TCNGA | 1 cut(s) | 346 |
| Hpy188III | TCNNGA | 4 cut(s) | 97, 238, 689, 716 |
| Hpy8I | GTNNAC | 1 cut(s) | 280 |
| HpyCH4III | ACNGT | 6 cut(s) | 58, 299, 435, 524, 545, 650 |
| HpyCH4IV | ACGT | 2 cut(s) | 270, 375 |
| HpyCH4V | TGCA | 7 cut(s) | 142, 201, 221, 306, 329, 411, 606 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 116, 603 |
| HpyF3I | CTNAG | 4 cut(s) | 111, 236, 343, 593 |
| HpySE526I | ACGT | 2 cut(s) | 270, 375 |
| Hsp92II | CATG | 2 cut(s) | 205, 610 |
| Ksp22I | TGATCA | 1 cut(s) | 667 |
| Kzo9I | GATC | 4 cut(s) | 288, 486, 583, 667 |
| LmnI | GCTCC | 1 cut(s) | 373 |
| LpnPI | CCDG | 9 cut(s) | 105, 128, 132, 174, 223, 616, 656, 665, 692 |
| Lsp1109I | GCAGC | 3 cut(s) | 126, 128, 233 |
| LweI | GCATC | 1 cut(s) | 316 |
| MabI | ACCWGGT | 1 cut(s) | 678 |
| MaeII | ACGT | 2 cut(s) | 270, 375 |
| MaeIII | GTNAC | 6 cut(s) | 58, 169, 209, 379, 539, 626 |
| MalI | GATC | 4 cut(s) | 290, 488, 585, 669 |
| MboI | GATC | 4 cut(s) | 288, 486, 583, 667 |
| MboII | GAAGA | 5 cut(s) | 25, 38, 253, 260, 331 |
| MfeI | CAATTG | 1 cut(s) | 230 |
| MluCI | AATT | 4 cut(s) | 29, 38, 230, 318 |
| MnlI | CCTC | 6 cut(s) | 198, 248, 400, 439, 488, 545 |
| MroXI | GAANNNNTTC | 3 cut(s) | 338, 696, 711 |
| MseI | TTAA | 3 cut(s) | 530, 657, 730 |
| MspR9I | CCNGG | 1 cut(s) | 680 |
| MunI | CAATTG | 1 cut(s) | 230 |
| MvaI | CCWGG | 1 cut(s) | 680 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 116, 603 |
| NdeII | GATC | 4 cut(s) | 288, 486, 583, 667 |
| NlaIII | CATG | 2 cut(s) | 205, 610 |
| NmuCI | GTSAC | 3 cut(s) | 58, 169, 209 |
| PceI | AGGCCT | 1 cut(s) | 602 |
| PdmI | GAANNNNTTC | 3 cut(s) | 338, 696, 711 |
| PfeI | GAWTC | 1 cut(s) | 397 |
| PkrI | GCNGC | 3 cut(s) | 118, 141, 223 |
| PshBI | ATTAAT | 1 cut(s) | 530 |
| Psp1406I | AACGTT | 1 cut(s) | 375 |
| Psp6I | CCWGG | 1 cut(s) | 678 |
| PspGI | CCWGG | 1 cut(s) | 678 |
| PstI | CTGCAG | 2 cut(s) | 144, 223 |
| SaqAI | TTAA | 3 cut(s) | 530, 657, 730 |
| SatI | GCNGC | 3 cut(s) | 117, 140, 222 |
| Sau3AI | GATC | 4 cut(s) | 288, 486, 583, 667 |
| ScrFI | CCNGG | 1 cut(s) | 680 |
| SexAI | ACCWGGT | 1 cut(s) | 678 |
| SfaNI | GCATC | 1 cut(s) | 316 |
| SfcI | CTRYAG | 4 cut(s) | 140, 219, 280, 520 |
| SmlI | CTYRAG | 1 cut(s) | 95 |
| SmoI | CTYRAG | 1 cut(s) | 95 |
| Sse9I | AATT | 4 cut(s) | 29, 38, 230, 318 |
| SseBI | AGGCCT | 1 cut(s) | 602 |
| StuI | AGGCCT | 1 cut(s) | 602 |
| StyD4I | CCNGG | 1 cut(s) | 678 |
| TaaI | ACNGT | 6 cut(s) | 58, 299, 435, 524, 545, 650 |
| TaiI | ACGT | 2 cut(s) | 273, 378 |
| TasI | AATT | 4 cut(s) | 29, 38, 230, 318 |
| TfiI | GAWTC | 1 cut(s) | 397 |
| Tru1I | TTAA | 3 cut(s) | 530, 657, 730 |
| Tru9I | TTAA | 3 cut(s) | 530, 657, 730 |
| TscAI | CASTG | 2 cut(s) | 223, 336 |
| TseFI | GTSAC | 3 cut(s) | 58, 169, 209 |
| TseI | GCWGC | 3 cut(s) | 116, 139, 221 |
| Tsp45I | GTSAC | 3 cut(s) | 58, 169, 209 |
| TspDTI | ATGAA | 3 cut(s) | 516, 579, 689 |
| TspRI | CASTG | 2 cut(s) | 223, 336 |
| VspI | ATTAAT | 1 cut(s) | 530 |
| XmiI | GTMKAC | 1 cut(s) | 279 |
| XmnI | GAANNNNTTC | 3 cut(s) | 338, 696, 711 |