Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 103 - 149 | 7.9e-10 | PPR repeat family |
| PPR_3 | PF13812 | 132 - 183 | 6.7e-10 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 134 - 166 | 1.4e-08 | PPR repeat |
| PPR_2 | PF13041 | 137 - 186 | 1.8e-14 | PPR repeat family |
| PPR_3 | PF13812 | 161 - 218 | 1.7e-12 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 171 - 202 | 5e-11 | PPR repeat |
| PPR_2 | PF13041 | 173 - 222 | 5.4e-17 | PPR repeat family |
| PPR | PF01535 | 176 - 206 | 7.6e-07 | PPR repeat |
| PPR_1 | PF12854 | 204 - 236 | 8.7e-13 | PPR repeat |
| PPR_2 | PF13041 | 208 - 257 | 7.8e-19 | PPR repeat family |
| PPR | PF01535 | 211 - 241 | 1.8e-07 | PPR repeat |
| PPR_long | PF17177 | 224 - 322 | 1.5e-07 | Pentacotripeptide-repeat region of PRORP |
| PPR_3 | PF13812 | 232 - 290 | 6.7e-12 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 239 - 272 | 1.3e-11 | PPR repeat |
| PPR_2 | PF13041 | 243 - 292 | 1e-18 | PPR repeat family |
| PPR | PF01535 | 246 - 276 | 2.1e-06 | PPR repeat |
| PPR_1 | PF12854 | 275 - 306 | 5.5e-10 | PPR repeat |
| PPR_2 | PF13041 | 285 - 326 | 6.8e-10 | PPR repeat family |
| PPR_1 | PF12854 | 310 - 342 | 1.7e-11 | PPR repeat |
| PPR | PF01535 | 316 - 345 | 2e-08 | PPR repeat |
| PPR_2 | PF13041 | 316 - 350 | 1e-05 | PPR repeat family |
| PPR_3 | PF13812 | 341 - 394 | 8.4e-08 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 345 - 376 | 4.2e-08 | PPR repeat |
| PPR_2 | PF13041 | 349 - 397 | 2.1e-17 | PPR repeat family |
| PPR | PF01535 | 352 - 380 | 3.4e-07 | PPR repeat |
| PPR_1 | PF12854 | 379 - 405 | 8.4e-13 | PPR repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1164 |
| AccII | CGCG | 3 cut(s) | 190, 890, 944 |
| AciI | CCGC | 3 cut(s) | 211, 890, 1193 |
| AclWI | GGATC | 3 cut(s) | 1029, 1042, 1090 |
| AcuI | CTGAAG | 1 cut(s) | 832 |
| AhlI | ACTAGT | 1 cut(s) | 673 |
| AluBI | AGCT | 2 cut(s) | 581, 791 |
| AluI | AGCT | 2 cut(s) | 581, 791 |
| AlwI | GGATC | 3 cut(s) | 1029, 1042, 1090 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 660 |
| AoxI | GGCC | 2 cut(s) | 382, 775 |
| ApeKI | GCWGC | 5 cut(s) | 36, 39, 203, 473, 578 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 167, 180, 301, 695 |
| AspS9I | GGNCC | 1 cut(s) | 382 |
| AsuHPI | GGTGA | 1 cut(s) | 418 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 660, 693 |
| BamHI | GGATCC | 1 cut(s) | 1034 |
| BbsI | GAAGAC | 1 cut(s) | 1204 |
| BbvI | GCAGC | 5 cut(s) | 23, 51, 190, 485, 590 |
| BccI | CCATC | 5 cut(s) | 556, 595, 877, 962, 1172 |
| BceAI | ACGGC | 1 cut(s) | 457 |
| BciVI | GTATCC | 1 cut(s) | 661 |
| BclI | TGATCA | 1 cut(s) | 1068 |
| BcuI | ACTAGT | 1 cut(s) | 673 |
| BfaI | CTAG | 4 cut(s) | 120, 240, 293, 674 |
| BfmI | CTRYAG | 1 cut(s) | 37 |
| BfuI | GTATCC | 1 cut(s) | 661 |
| BglII | AGATCT | 1 cut(s) | 222 |
| BisI | GCNGC | 5 cut(s) | 37, 40, 204, 474, 579 |
| BlsI | GCNGC | 5 cut(s) | 38, 41, 205, 475, 580 |
| BmgT120I | GGNCC | 1 cut(s) | 382 |
| BmiI | GGNNCC | 1 cut(s) | 1036 |
| BmsI | GCATC | 2 cut(s) | 605, 853 |
| BpiI | GAAGAC | 1 cut(s) | 1204 |
| BpmI | CTGGAG | 1 cut(s) | 711 |
| BsaJI | CCNNGG | 2 cut(s) | 439, 1038 |
| Bse1I | ACTGG | 2 cut(s) | 56, 778 |
| BseDI | CCNNGG | 2 cut(s) | 439, 1038 |
| BseGI | GGATG | 3 cut(s) | 620, 888, 973 |
| BseMII | CTCAG | 1 cut(s) | 233 |
| BseNI | ACTGG | 2 cut(s) | 56, 778 |
| BseRI | GAGGAG | 2 cut(s) | 63, 999 |
| BseXI | GCAGC | 5 cut(s) | 23, 51, 190, 485, 590 |
| BseYI | CCCAGC | 1 cut(s) | 129 |
| BsgI | GTGCAG | 1 cut(s) | 597 |
| Bsh1236I | CGCG | 3 cut(s) | 190, 890, 944 |
| BshFI | GGCC | 2 cut(s) | 384, 777 |
| BslFI | GGGAC | 3 cut(s) | 177, 414, 1152 |
| BsmFI | GGGAC | 3 cut(s) | 177, 414, 1152 |
| BsnI | GGCC | 2 cut(s) | 384, 777 |
| Bsp143I | GATC | 5 cut(s) | 222, 1015, 1034, 1068, 1095 |
| Bsp19I | CCATGG | 1 cut(s) | 1038 |
| BspACI | CCGC | 3 cut(s) | 211, 890, 1193 |
| BspANI | GGCC | 2 cut(s) | 384, 777 |
| BspCNI | CTCAG | 1 cut(s) | 232 |
| BspFNI | CGCG | 3 cut(s) | 190, 890, 944 |
| BspLI | GGNNCC | 1 cut(s) | 1036 |
| BspMAI | CTGCAG | 1 cut(s) | 41 |
| BspPI | GGATC | 3 cut(s) | 1029, 1042, 1090 |
| BsrI | ACTGG | 2 cut(s) | 56, 778 |
| BssECI | CCNNGG | 2 cut(s) | 439, 1038 |
| BssMI | GATC | 5 cut(s) | 222, 1015, 1034, 1068, 1095 |
| BssT1I | CCWWGG | 1 cut(s) | 1038 |
| Bst4CI | ACNGT | 7 cut(s) | 344, 575, 646, 656, 662, 870, 956 |
| BstC8I | GCNNGC | 4 cut(s) | 156, 201, 620, 980 |
| BstDEI | CTNAG | 1 cut(s) | 219 |
| BstDSI | CCRYGG | 2 cut(s) | 439, 1038 |
| BstF5I | GGATG | 3 cut(s) | 620, 888, 973 |
| BstFNI | CGCG | 3 cut(s) | 190, 890, 944 |
| BstKTI | GATC | 5 cut(s) | 225, 1018, 1037, 1071, 1098 |
| BstMBI | GATC | 5 cut(s) | 222, 1015, 1034, 1068, 1095 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 187, 196, 473, 774 |
| BstNSI | RCATGY | 1 cut(s) | 158 |
| BstSFI | CTRYAG | 1 cut(s) | 37 |
| BstUI | CGCG | 3 cut(s) | 190, 890, 944 |
| BstV1I | GCAGC | 5 cut(s) | 23, 51, 190, 485, 590 |
| BstV2I | GAAGAC | 1 cut(s) | 1204 |
| BstX2I | RGATCY | 3 cut(s) | 222, 1034, 1095 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 904 |
| BstYI | RGATCY | 3 cut(s) | 222, 1034, 1095 |
| BsuI | GTATCC | 1 cut(s) | 661 |
| BsuRI | GGCC | 2 cut(s) | 384, 777 |
| BtgI | CCRYGG | 2 cut(s) | 439, 1038 |
| BtsCI | GGATG | 3 cut(s) | 620, 888, 973 |
| BtsIMutI | CAGTG | 4 cut(s) | 580, 658, 785, 866 |
| Cac8I | GCNNGC | 4 cut(s) | 156, 201, 620, 980 |
| CaiI | CAGNNNCTG | 1 cut(s) | 660 |
| Cfr13I | GGNCC | 1 cut(s) | 382 |
| CseI | GACGC | 3 cut(s) | 179, 479, 950 |
| CviAII | CATG | 4 cut(s) | 155, 913, 1039, 1100 |
| DdeI | CTNAG | 1 cut(s) | 219 |
| DpnI | GATC | 5 cut(s) | 224, 1017, 1036, 1070, 1097 |
| DpnII | GATC | 5 cut(s) | 222, 1015, 1034, 1068, 1095 |
| Eco130I | CCWWGG | 1 cut(s) | 1038 |
| Eco57I | CTGAAG | 1 cut(s) | 832 |
| EcoT14I | CCWWGG | 1 cut(s) | 1038 |
| EcoT22I | ATGCAT | 1 cut(s) | 1131 |
| ErhI | CCWWGG | 1 cut(s) | 1038 |
| FaeI | CATG | 4 cut(s) | 158, 916, 1042, 1103 |
| FaqI | GGGAC | 3 cut(s) | 177, 414, 1152 |
| FatI | CATG | 4 cut(s) | 154, 912, 1038, 1099 |
| FauI | CCCGC | 1 cut(s) | 1186 |
| FbaI | TGATCA | 1 cut(s) | 1068 |
| Fnu4HI | GCNGC | 5 cut(s) | 37, 40, 204, 474, 579 |
| FokI | GGATG | 3 cut(s) | 627, 895, 980 |
| Fsp4HI | GCNGC | 5 cut(s) | 37, 40, 204, 474, 579 |
| FspBI | CTAG | 4 cut(s) | 120, 240, 293, 674 |
| GluI | GCNGC | 5 cut(s) | 37, 40, 204, 474, 579 |
| GsaI | CCCAGC | 1 cut(s) | 133 |
| GsuI | CTGGAG | 1 cut(s) | 711 |
| HaeIII | GGCC | 2 cut(s) | 384, 777 |
| HgaI | GACGC | 3 cut(s) | 179, 479, 950 |
| Hin1II | CATG | 4 cut(s) | 158, 916, 1042, 1103 |
| HincII | GTYRAC | 1 cut(s) | 910 |
| HindII | GTYRAC | 1 cut(s) | 910 |
| HinfI | GANTC | 6 cut(s) | 229, 286, 297, 754, 762, 919 |
| HphI | GGTGA | 1 cut(s) | 418 |
| Hpy166II | GTNNAC | 1 cut(s) | 910 |
| Hpy188I | TCNGA | 2 cut(s) | 222, 834 |
| Hpy188III | TCNNGA | 4 cut(s) | 120, 226, 399, 728 |
| Hpy8I | GTNNAC | 1 cut(s) | 910 |
| HpyAV | CCTTC | 3 cut(s) | 157, 433, 856 |
| HpyCH4III | ACNGT | 7 cut(s) | 344, 575, 646, 656, 662, 870, 956 |
| HpyCH4IV | ACGT | 1 cut(s) | 732 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 187, 196, 473, 774 |
| HpyF3I | CTNAG | 1 cut(s) | 219 |
| HpySE526I | ACGT | 1 cut(s) | 732 |
| Hsp92II | CATG | 4 cut(s) | 158, 916, 1042, 1103 |
| Ksp22I | TGATCA | 1 cut(s) | 1068 |
| Kzo9I | GATC | 5 cut(s) | 222, 1015, 1034, 1068, 1095 |
| LmnI | GCTCC | 1 cut(s) | 730 |
| Lsp1109I | GCAGC | 5 cut(s) | 23, 51, 190, 485, 590 |
| LweI | GCATC | 2 cut(s) | 605, 853 |
| MaeI | CTAG | 4 cut(s) | 120, 240, 293, 674 |
| MaeII | ACGT | 1 cut(s) | 732 |
| MaeIII | GTNAC | 6 cut(s) | 526, 588, 656, 736, 971, 1058 |
| MalI | GATC | 5 cut(s) | 224, 1017, 1036, 1070, 1097 |
| MboI | GATC | 5 cut(s) | 222, 1015, 1034, 1068, 1095 |
| MboII | GAAGA | 5 cut(s) | 53, 382, 610, 617, 1209 |
| MfeI | CAATTG | 1 cut(s) | 334 |
| MflI | RGATCY | 3 cut(s) | 222, 1034, 1095 |
| MluCI | AATT | 3 cut(s) | 334, 386, 900 |
| MlyI | GAGTC | 3 cut(s) | 223, 295, 771 |
| Mph1103I | ATGCAT | 1 cut(s) | 1131 |
| MroXI | GAANNNNTTC | 4 cut(s) | 167, 180, 301, 695 |
| MseI | TTAA | 1 cut(s) | 1044 |
| MslI | CAYNNNNRTG | 1 cut(s) | 704 |
| MunI | CAATTG | 1 cut(s) | 334 |
| MvnI | CGCG | 3 cut(s) | 190, 890, 944 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 187, 196, 473, 774 |
| NcoI | CCATGG | 1 cut(s) | 1038 |
| NdeII | GATC | 5 cut(s) | 222, 1015, 1034, 1068, 1095 |
| NlaIII | CATG | 4 cut(s) | 158, 916, 1042, 1103 |
| NlaIV | GGNNCC | 1 cut(s) | 1036 |
| NmuCI | GTSAC | 1 cut(s) | 656 |
| NsiI | ATGCAT | 1 cut(s) | 1131 |
| NspI | RCATGY | 1 cut(s) | 158 |
| PaeI | GCATGC | 1 cut(s) | 158 |
| PdmI | GAANNNNTTC | 4 cut(s) | 167, 180, 301, 695 |
| PfeI | GAWTC | 3 cut(s) | 297, 754, 919 |
| PkrI | GCNGC | 5 cut(s) | 38, 41, 205, 475, 580 |
| PleI | GAGTC | 3 cut(s) | 223, 294, 770 |
| PpsI | GAGTC | 3 cut(s) | 223, 294, 770 |
| PsiI | TTATAA | 1 cut(s) | 1164 |
| PspFI | CCCAGC | 1 cut(s) | 129 |
| PspN4I | GGNNCC | 1 cut(s) | 1036 |
| PspPI | GGNCC | 1 cut(s) | 382 |
| PstI | CTGCAG | 1 cut(s) | 41 |
| PstNI | CAGNNNCTG | 1 cut(s) | 660 |
| PsuI | RGATCY | 3 cut(s) | 222, 1034, 1095 |
| RseI | CAYNNNNRTG | 1 cut(s) | 704 |
| SaqAI | TTAA | 1 cut(s) | 1044 |
| SatI | GCNGC | 5 cut(s) | 37, 40, 204, 474, 579 |
| Sau3AI | GATC | 5 cut(s) | 222, 1015, 1034, 1068, 1095 |
| Sau96I | GGNCC | 1 cut(s) | 382 |
| SchI | GAGTC | 3 cut(s) | 223, 295, 771 |
| SfaNI | GCATC | 2 cut(s) | 605, 853 |
| SfcI | CTRYAG | 1 cut(s) | 37 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 704 |
| SpeI | ACTAGT | 1 cut(s) | 673 |
| SphI | GCATGC | 1 cut(s) | 158 |
| Sse9I | AATT | 3 cut(s) | 334, 386, 900 |
| SsiI | CCGC | 3 cut(s) | 211, 890, 1193 |
| SspMI | CTAG | 4 cut(s) | 120, 240, 293, 674 |
| StyI | CCWWGG | 1 cut(s) | 1038 |
| TaaI | ACNGT | 7 cut(s) | 344, 575, 646, 656, 662, 870, 956 |
| TaiI | ACGT | 1 cut(s) | 735 |
| TaqI | TCGA | 4 cut(s) | 171, 651, 1051, 1119 |
| TasI | AATT | 3 cut(s) | 334, 386, 900 |
| TfiI | GAWTC | 3 cut(s) | 297, 754, 919 |
| Tru1I | TTAA | 1 cut(s) | 1044 |
| Tru9I | TTAA | 1 cut(s) | 1044 |
| TscAI | CASTG | 4 cut(s) | 580, 665, 785, 873 |
| TseFI | GTSAC | 1 cut(s) | 656 |
| TseI | GCWGC | 5 cut(s) | 36, 39, 203, 473, 578 |
| Tsp45I | GTSAC | 1 cut(s) | 656 |
| TspDTI | ATGAA | 5 cut(s) | 80, 189, 696, 822, 1137 |
| TspGWI | ACGGA | 1 cut(s) | 1089 |
| TspRI | CASTG | 4 cut(s) | 580, 665, 785, 873 |
| XbaI | TCTAGA | 1 cut(s) | 119 |
| XceI | RCATGY | 1 cut(s) | 158 |
| XmnI | GAANNNNTTC | 4 cut(s) | 167, 180, 301, 695 |
| XspI | CTAG | 4 cut(s) | 120, 240, 293, 674 |
| Zsp2I | ATGCAT | 1 cut(s) | 1131 |