pentatricopeptide repeat-containing protein At1g12700, mitochondrial
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_1 | PF12854 | 120 - 152 | 2e-09 | PPR repeat |
| PPR_2 | PF13041 | 123 - 172 | 1.3e-11 | PPR repeat family |
| PPR_long | PF17177 | 173 - 260 | 1.3e-06 | Pentacotripeptide-repeat region of PRORP |
| PPR_3 | PF13812 | 174 - 232 | 2.1e-10 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 179 - 212 | 1.8e-09 | PPR repeat |
| PPR_2 | PF13041 | 183 - 232 | 6.5e-16 | PPR repeat family |
| PPR_1 | PF12854 | 215 - 247 | 1.6e-07 | PPR repeat |
| PPR_2 | PF13041 | 222 - 264 | 4e-07 | PPR repeat family |
| PPR_long | PF17177 | 269 - 384 | 1.3e-07 | Pentacotripeptide-repeat region of PRORP |
| PPR_3 | PF13812 | 287 - 344 | 6.1e-06 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 295 - 328 | 1.2e-14 | PPR repeat |
| PPR_2 | PF13041 | 299 - 347 | 7.4e-17 | PPR repeat family |
| TPR_24 | PF23276 | 300 - 392 | 1.3e-07 | Fungal tetratrico peptide repeats |
| PPR | PF01535 | 302 - 329 | 2e-08 | PPR repeat |
| PPR_1 | PF12854 | 334 - 363 | 9.2e-07 | PPR repeat |
| PPR_1 | PF12854 | 367 - 394 | 6.2e-08 | PPR repeat |
| PPR_2 | PF13041 | 370 - 418 | 8.2e-16 | PPR repeat family |
| PPR_3 | PF13812 | 397 - 446 | 3.7e-06 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 400 - 432 | 1e-09 | PPR repeat |
| PPR | PF01535 | 408 - 437 | 5.6e-07 | PPR repeat |
| PPR_2 | PF13041 | 411 - 452 | 4.6e-10 | PPR repeat family |
| PPR_2 | PF13041 | 443 - 480 | 5.3e-06 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 912 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 243, 468 |
| AatII | GACGTC | 1 cut(s) | 466 |
| Acc16I | TGCGCA | 1 cut(s) | 662 |
| AciI | CCGC | 3 cut(s) | 169, 473, 579 |
| AclI | AACGTT | 1 cut(s) | 49 |
| AclWI | GGATC | 1 cut(s) | 1469 |
| AcsI | RAATTY | 2 cut(s) | 65, 1158 |
| AcuI | CTGAAG | 1 cut(s) | 125 |
| AcyI | GRCGYC | 2 cut(s) | 148, 463 |
| AflIII | ACRYGT | 1 cut(s) | 826 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1431, 1463 |
| AluBI | AGCT | 4 cut(s) | 82, 510, 611, 1151 |
| AluI | AGCT | 4 cut(s) | 82, 510, 611, 1151 |
| Alw21I | GWGCWC | 1 cut(s) | 512 |
| Alw26I | GTCTC | 2 cut(s) | 251, 1378 |
| AlwI | GGATC | 1 cut(s) | 1469 |
| AoxI | GGCC | 3 cut(s) | 340, 595, 1033 |
| ApeKI | GCWGC | 2 cut(s) | 431, 1207 |
| ApoI | RAATTY | 2 cut(s) | 65, 1158 |
| AseI | ATTAAT | 2 cut(s) | 291, 500 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 125, 138, 876 |
| AspLEI | GCGC | 1 cut(s) | 663 |
| AspS9I | GGNCC | 2 cut(s) | 340, 1326 |
| AsuHPI | GGTGA | 2 cut(s) | 367, 646 |
| AsuII | TTCGAA | 1 cut(s) | 1009 |
| AvaII | GGWCC | 1 cut(s) | 1326 |
| BanII | GRGCYC | 1 cut(s) | 512 |
| BauI | CACGAG | 1 cut(s) | 261 |
| BbsI | GAAGAC | 1 cut(s) | 353 |
| Bbv12I | GWGCWC | 1 cut(s) | 512 |
| BbvCI | CCTCAGC | 1 cut(s) | 108 |
| BbvI | GCAGC | 2 cut(s) | 443, 1219 |
| BccI | CCATC | 5 cut(s) | 514, 730, 920, 1078, 1313 |
| BceAI | ACGGC | 1 cut(s) | 415 |
| BcoDI | GTCTC | 2 cut(s) | 251, 1378 |
| BfaI | CTAG | 1 cut(s) | 1106 |
| BfmI | CTRYAG | 1 cut(s) | 216 |
| BisI | GCNGC | 2 cut(s) | 432, 1208 |
| BlsI | GCNGC | 2 cut(s) | 433, 1209 |
| Bme18I | GGWCC | 1 cut(s) | 1326 |
| BmgT120I | GGNCC | 2 cut(s) | 340, 1326 |
| BmsI | GCATC | 2 cut(s) | 969, 1436 |
| BpiI | GAAGAC | 1 cut(s) | 353 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 136, 168 |
| BpmI | CTGGAG | 3 cut(s) | 531, 1173, 1299 |
| Bpu10I | CCTNAGC | 1 cut(s) | 108 |
| Bpu14I | TTCGAA | 1 cut(s) | 1009 |
| Bsa29I | ATCGAT | 1 cut(s) | 846 |
| BsaHI | GRCGYC | 2 cut(s) | 148, 463 |
| BsaI | GGTCTC | 1 cut(s) | 251 |
| BsaJI | CCNNGG | 2 cut(s) | 397, 1345 |
| BseCI | ATCGAT | 1 cut(s) | 846 |
| BseDI | CCNNGG | 2 cut(s) | 397, 1345 |
| BseGI | GGATG | 3 cut(s) | 118, 484, 820 |
| BseMII | CTCAG | 3 cut(s) | 99, 966, 1452 |
| BseXI | GCAGC | 2 cut(s) | 443, 1219 |
| BseYI | CCCAGC | 1 cut(s) | 78 |
| BsgI | GTGCAG | 1 cut(s) | 1226 |
| BshFI | GGCC | 3 cut(s) | 342, 597, 1035 |
| BshVI | ATCGAT | 1 cut(s) | 846 |
| BsiHKAI | GWGCWC | 1 cut(s) | 512 |
| BsiSI | CCGG | 2 cut(s) | 476, 1478 |
| BslFI | GGGAC | 2 cut(s) | 474, 900 |
| BsmAI | GTCTC | 2 cut(s) | 251, 1378 |
| BsmFI | GGGAC | 2 cut(s) | 474, 900 |
| BsnI | GGCC | 3 cut(s) | 342, 597, 1035 |
| Bso31I | GGTCTC | 1 cut(s) | 251 |
| Bsp119I | TTCGAA | 1 cut(s) | 1009 |
| Bsp1286I | GDGCHC | 1 cut(s) | 512 |
| Bsp143I | GATC | 3 cut(s) | 835, 843, 1474 |
| BspACI | CCGC | 3 cut(s) | 169, 473, 579 |
| BspANI | GGCC | 3 cut(s) | 342, 597, 1035 |
| BspCNI | CTCAG | 3 cut(s) | 100, 967, 1453 |
| BspDI | ATCGAT | 1 cut(s) | 846 |
| BspMAI | CTGCAG | 1 cut(s) | 220 |
| BspPI | GGATC | 1 cut(s) | 1469 |
| BspT104I | TTCGAA | 1 cut(s) | 1009 |
| BspTNI | GGTCTC | 1 cut(s) | 251 |
| BssECI | CCNNGG | 2 cut(s) | 397, 1345 |
| BssMI | GATC | 3 cut(s) | 835, 843, 1474 |
| BssNI | GRCGYC | 2 cut(s) | 148, 463 |
| BssSI | CACGAG | 1 cut(s) | 261 |
| Bst2BI | CACGAG | 1 cut(s) | 261 |
| Bst4CI | ACNGT | 2 cut(s) | 724, 904 |
| BstACI | GRCGYC | 2 cut(s) | 148, 463 |
| BstBI | TTCGAA | 1 cut(s) | 1009 |
| BstDEI | CTNAG | 4 cut(s) | 108, 975, 1076, 1461 |
| BstDSI | CCRYGG | 1 cut(s) | 397 |
| BstF5I | GGATG | 3 cut(s) | 118, 484, 820 |
| BstHHI | GCGC | 1 cut(s) | 663 |
| BstKTI | GATC | 3 cut(s) | 838, 846, 1477 |
| BstMAI | GTCTC | 2 cut(s) | 251, 1378 |
| BstMBI | GATC | 3 cut(s) | 835, 843, 1474 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 88, 145, 154, 194, 585, 594, 1041 |
| BstNSI | RCATGY | 1 cut(s) | 830 |
| BstSFI | CTRYAG | 1 cut(s) | 216 |
| BstV1I | GCAGC | 2 cut(s) | 443, 1219 |
| BstV2I | GAAGAC | 1 cut(s) | 353 |
| BstX2I | RGATCY | 1 cut(s) | 1474 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 724, 1323 |
| BstYI | RGATCY | 1 cut(s) | 1474 |
| Bsu15I | ATCGAT | 1 cut(s) | 846 |
| BsuRI | GGCC | 3 cut(s) | 342, 597, 1035 |
| BsuTUI | ATCGAT | 1 cut(s) | 846 |
| BtgI | CCRYGG | 1 cut(s) | 397 |
| BtsCI | GGATG | 3 cut(s) | 118, 484, 820 |
| CfoI | GCGC | 1 cut(s) | 663 |
| Cfr13I | GGNCC | 2 cut(s) | 340, 1326 |
| ClaI | ATCGAT | 1 cut(s) | 846 |
| CseI | GACGC | 1 cut(s) | 137 |
| CviAII | CATG | 3 cut(s) | 517, 827, 1241 |
| DdeI | CTNAG | 4 cut(s) | 108, 975, 1076, 1461 |
| DpnI | GATC | 3 cut(s) | 837, 845, 1476 |
| DpnII | GATC | 3 cut(s) | 835, 843, 1474 |
| DraI | TTTAAA | 1 cut(s) | 279 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 243, 468 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 243, 468 |
| EciI | GGCGGA | 2 cut(s) | 462, 594 |
| Ecl136II | GAGCTC | 1 cut(s) | 510 |
| Eco24I | GRGCYC | 1 cut(s) | 512 |
| Eco31I | GGTCTC | 1 cut(s) | 251 |
| Eco47I | GGWCC | 1 cut(s) | 1326 |
| Eco53kI | GAGCTC | 1 cut(s) | 510 |
| Eco57I | CTGAAG | 1 cut(s) | 125 |
| EcoICRI | GAGCTC | 1 cut(s) | 510 |
| EcoT22I | ATGCAT | 1 cut(s) | 1429 |
| EcoT38I | GRGCYC | 1 cut(s) | 512 |
| FaeI | CATG | 3 cut(s) | 520, 830, 1244 |
| FaqI | GGGAC | 2 cut(s) | 474, 900 |
| FatI | CATG | 3 cut(s) | 516, 826, 1240 |
| Fnu4HI | GCNGC | 2 cut(s) | 432, 1208 |
| FokI | GGATG | 3 cut(s) | 125, 491, 827 |
| FriOI | GRGCYC | 1 cut(s) | 512 |
| Fsp4HI | GCNGC | 2 cut(s) | 432, 1208 |
| FspAI | RTGCGCAY | 1 cut(s) | 662 |
| FspBI | CTAG | 1 cut(s) | 1106 |
| FspI | TGCGCA | 1 cut(s) | 662 |
| GlaI | GCGC | 1 cut(s) | 662 |
| GluI | GCNGC | 2 cut(s) | 432, 1208 |
| GsaI | CCCAGC | 1 cut(s) | 82 |
| GsuI | CTGGAG | 3 cut(s) | 531, 1173, 1299 |
| HaeIII | GGCC | 3 cut(s) | 342, 597, 1035 |
| HapII | CCGG | 2 cut(s) | 476, 1478 |
| HgaI | GACGC | 1 cut(s) | 137 |
| HhaI | GCGC | 1 cut(s) | 663 |
| Hin1I | GRCGYC | 2 cut(s) | 148, 463 |
| Hin1II | CATG | 3 cut(s) | 520, 830, 1244 |
| Hin6I | GCGC | 1 cut(s) | 661 |
| HinP1I | GCGC | 1 cut(s) | 661 |
| HinfI | GANTC | 6 cut(s) | 255, 310, 582, 637, 1237, 1406 |
| HpaII | CCGG | 2 cut(s) | 476, 1478 |
| HphI | GGTGA | 2 cut(s) | 367, 646 |
| Hpy166II | GTNNAC | 1 cut(s) | 1120 |
| Hpy188I | TCNGA | 8 cut(s) | 144, 254, 413, 654, 976, 1346, 1462, 1487 |
| Hpy188III | TCNNGA | 7 cut(s) | 118, 263, 445, 548, 1001, 1316, 1394 |
| Hpy8I | GTNNAC | 1 cut(s) | 1120 |
| Hpy99I | CGWCG | 1 cut(s) | 807 |
| HpyAV | CCTTC | 6 cut(s) | 115, 168, 391, 676, 1082, 1130 |
| HpyCH4III | ACNGT | 2 cut(s) | 724, 904 |
| HpyCH4IV | ACGT | 2 cut(s) | 49, 463 |
| HpyCH4V | TGCA | 9 cut(s) | 218, 516, 588, 982, 1146, 1169, 1207, 1421, 1427 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 88, 145, 154, 194, 585, 594, 1041 |
| HpyF3I | CTNAG | 4 cut(s) | 108, 975, 1076, 1461 |
| HpySE526I | ACGT | 2 cut(s) | 49, 463 |
| Hsp92I | GRCGYC | 2 cut(s) | 148, 463 |
| Hsp92II | CATG | 3 cut(s) | 520, 830, 1244 |
| HspAI | GCGC | 1 cut(s) | 661 |
| Kzo9I | GATC | 3 cut(s) | 835, 843, 1474 |
| LmnI | GCTCC | 1 cut(s) | 550 |
| Lsp1109I | GCAGC | 2 cut(s) | 443, 1219 |
| LweI | GCATC | 2 cut(s) | 969, 1436 |
| MaeI | CTAG | 1 cut(s) | 1106 |
| MaeII | ACGT | 2 cut(s) | 49, 463 |
| MaeIII | GTNAC | 5 cut(s) | 373, 484, 556, 692, 904 |
| MalI | GATC | 3 cut(s) | 837, 845, 1476 |
| MboI | GATC | 3 cut(s) | 835, 843, 1474 |
| MboII | GAAGA | 2 cut(s) | 340, 353 |
| MflI | RGATCY | 1 cut(s) | 1474 |
| MhlI | GDGCHC | 1 cut(s) | 512 |
| MluCI | AATT | 9 cut(s) | 65, 292, 344, 353, 750, 1070, 1158, 1439, 1488 |
| MlyI | GAGTC | 3 cut(s) | 591, 646, 1415 |
| MmeI | TCCRAC | 2 cut(s) | 1080, 1304 |
| Mph1103I | ATGCAT | 1 cut(s) | 1429 |
| MroXI | GAANNNNTTC | 3 cut(s) | 125, 138, 876 |
| MseI | TTAA | 8 cut(s) | 278, 291, 500, 681, 989, 1029, 1265, 1355 |
| MspI | CCGG | 2 cut(s) | 476, 1478 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 88, 145, 154, 194, 585, 594, 1041 |
| NdeII | GATC | 3 cut(s) | 835, 843, 1474 |
| NlaIII | CATG | 3 cut(s) | 520, 830, 1244 |
| NmuCI | GTSAC | 1 cut(s) | 373 |
| NsbI | TGCGCA | 1 cut(s) | 662 |
| NsiI | ATGCAT | 1 cut(s) | 1429 |
| NspI | RCATGY | 1 cut(s) | 830 |
| NspV | TTCGAA | 1 cut(s) | 1009 |
| PciI | ACATGT | 1 cut(s) | 826 |
| PdmI | GAANNNNTTC | 3 cut(s) | 125, 138, 876 |
| PfeI | GAWTC | 3 cut(s) | 255, 310, 1237 |
| PkrI | GCNGC | 2 cut(s) | 433, 1209 |
| PleI | GAGTC | 3 cut(s) | 590, 645, 1414 |
| PpsI | GAGTC | 3 cut(s) | 590, 645, 1414 |
| PscI | ACATGT | 1 cut(s) | 826 |
| PshBI | ATTAAT | 2 cut(s) | 291, 500 |
| PsiI | TTATAA | 1 cut(s) | 912 |
| Psp124BI | GAGCTC | 1 cut(s) | 512 |
| Psp1406I | AACGTT | 1 cut(s) | 49 |
| PspFI | CCCAGC | 1 cut(s) | 78 |
| PspPI | GGNCC | 2 cut(s) | 340, 1326 |
| PstI | CTGCAG | 1 cut(s) | 220 |
| PsuI | RGATCY | 1 cut(s) | 1474 |
| SacI | GAGCTC | 1 cut(s) | 512 |
| SaqAI | TTAA | 8 cut(s) | 278, 291, 500, 681, 989, 1029, 1265, 1355 |
| SatI | GCNGC | 2 cut(s) | 432, 1208 |
| Sau3AI | GATC | 3 cut(s) | 835, 843, 1474 |
| Sau96I | GGNCC | 2 cut(s) | 340, 1326 |
| SchI | GAGTC | 3 cut(s) | 591, 646, 1415 |
| SduI | GDGCHC | 1 cut(s) | 512 |
| SfaNI | GCATC | 2 cut(s) | 969, 1436 |
| SfcI | CTRYAG | 1 cut(s) | 216 |
| SfuI | TTCGAA | 1 cut(s) | 1009 |
| SinI | GGWCC | 1 cut(s) | 1326 |
| Sse9I | AATT | 9 cut(s) | 65, 292, 344, 353, 750, 1070, 1158, 1439, 1488 |
| SsiI | CCGC | 3 cut(s) | 169, 473, 579 |
| SspI | AATATT | 2 cut(s) | 283, 1126 |
| SspMI | CTAG | 1 cut(s) | 1106 |
| SstI | GAGCTC | 1 cut(s) | 512 |
| TaaI | ACNGT | 2 cut(s) | 724, 904 |
| TaiI | ACGT | 2 cut(s) | 52, 466 |
| TaqI | TCGA | 4 cut(s) | 129, 838, 846, 1009 |
| TasI | AATT | 9 cut(s) | 65, 292, 344, 353, 750, 1070, 1158, 1439, 1488 |
| TfiI | GAWTC | 3 cut(s) | 255, 310, 1237 |
| Tru1I | TTAA | 8 cut(s) | 278, 291, 500, 681, 989, 1029, 1265, 1355 |
| Tru9I | TTAA | 8 cut(s) | 278, 291, 500, 681, 989, 1029, 1265, 1355 |
| TseFI | GTSAC | 1 cut(s) | 373 |
| TseI | GCWGC | 2 cut(s) | 431, 1207 |
| Tsp45I | GTSAC | 1 cut(s) | 373 |
| TspDTI | ATGAA | 4 cut(s) | 29, 147, 642, 1229 |
| VpaK11BI | GGWCC | 1 cut(s) | 1326 |
| VspI | ATTAAT | 2 cut(s) | 291, 500 |
| XapI | RAATTY | 2 cut(s) | 65, 1158 |
| XceI | RCATGY | 1 cut(s) | 830 |
| XmnI | GAANNNNTTC | 3 cut(s) | 125, 138, 876 |
| XspI | CTAG | 1 cut(s) | 1106 |
| ZraI | GACGTC | 1 cut(s) | 464 |
| Zsp2I | ATGCAT | 1 cut(s) | 1429 |